GEInfo: an R package for gene-environment interaction analysis incorporating prior information.

SUMMARY: Gene-environment (G-E) interactions have important implications for many complex diseases. With higher dimensionality and weaker signals, G-E interaction analysis is more challenged than the analysis of main G (and E) effects. The accumulation of published literature makes it possible to borrow strength from prior information and improve analysis. In a recent study, a 'quasi-likelihood + penalization' approach was developed to effectively incorporate prior information. Here, we first extend it to linear, logistic and Poisson regressions. Such models are much more popular in practice. More importantly, we develop the R package GEInfo, which realizes this approach in a user-friendly manner. To facilitate direct comparison and routine data analysis, the package also includes functions for alternative methods and visualization. AVAILABILITY AND IMPLEMENTATION: The package is available at https://CRAN.R-project.org/package=GEInfo. SUPPLEMENTARY INFORMATION: Supplementary materials are available at Bioinformatics online.

An Ultra-Low Power Reconfigurable Biomedical AI Processor With Adaptive Learning for Versatile Wearable Intelligent Health Monitoring.

Wearable intelligent health monitoring devices with on-device biomedical AI processor can be used to detect the abnormity in users' biomedical signals (e.g., ECG arrythmia classification, EEG-based seizure detection). This requires ultra-low power and reconfigurable biomedical AI processor to support battery-supplied wearable devices and versatile intelligent health monitoring applications while achieving high classification accuracy. However, existing designs have issues in meeting one or more of the above requirements. In this work, a reconfigurable biomedical AI processor (named BioAIP) is proposed, mainly featuring: 1) a reconfigurable biomedical AI processing architecture to support versatile biomedical AI processing. 2) an event-driven biomedical AI processing architecture with approximate data compression to reduce the power consumption. 3) an AI-based adaptive-learning architecture to address patient-to-patient variation and improve the classification accuracy. The design has been implemented and fabricated using a 65nm CMOS process technology. It has been demonstrated with three typical biomedical AI applications, including ECG arrythmia classification, EEG-based seizure detection and EMG-based hand gesture recognition. Compared with the state-of-the-art designs optimized for single biomedical AI tasks, the BioAIP achieves the lowest energy per classification among the designs with similar accuracy, while supporting various biomedical AI tasks.