eccDNA Atlas: a comprehensive resource of eccDNA catalog.

Extrachromosomal circular DNA (eccDNA) represents a large category of non-mitochondrial and non-plasmid circular extrachromosomal DNA, playing an indispensable role in various aspects such as tumorigenesis, immune responses. However, the information of characteristics and functions about eccDNA is fragmented, hiding behind abundant literatures and massive whole-genome sequencing (WGS) data, which has not been sufficiently used for the identification of eccDNAs. Therefore, establishing an integrated repository portal is essential for identifying and analyzing eccDNAs. Here, we developed eccDNA Atlas (http://lcbb.swjtu.edu.cn/eccDNAatlas), a user-friendly database of eccDNAs that aims to provide a high-quality and integrated resource for browsing, searching and analyzing eccDNAs from multiple species. eccDNA Atlas currently contains 629 987 eccDNAs and 8221 ecDNAs manually curated from literatures and 1105 ecDNAs predicted by AmpliconArchitect based on WGS data involved in 66 diseases, 57 tissues and 319 cell lines. The content of each eccDNA entry includes multiple aspects such as sequence, disease, function, characteristic, validation strategies. Furthermore, abundant annotations and analyzing utilities were provided to explore existing eccDNAs in eccDNA Atlas or user-defined eccDNAs including oncogenes, typical enhancers, super enhancers, CTCF-binding sites, SNPs, chromatin accessibility, eQTLs, gene expression, survival and genome visualization. Overall, eccDNA Atlas provides an integrated eccDNA data warehouse and serves as an important tool for future research.

Electrochemical performance of a new all solid-state ultra-low noise electrospray electrode as a marine electric field sensor.

A new type of Ag/AgCl electrode as a marine electric field sensor is prepared using electrospray. The surface of the electrode is porous, and the particle size of AgCl is small and uniform with an average particle size of 1.43 µm, which accelerated the speed of the oxidation-reduction reactions. Therefore, the electrode with large specific surface area has high stability and low noise. The impedance, sensitivity, self-noise, and stability of the electrode are measured to study the electrochemical performance of the electrode. The impedance of the electrode is 7.9 Ω, and the electrode shows resistance characteristics, meaning that the electrode can well receive the weak ocean electric field signals with low signal distortion. The sensitivity experiment result shows that the electrode can well restore the sinusoidal electric field signal of 1 Hz (10 mV). The voltage drift is less than 5 µV/100 h, the self-potential is between -51 and 56 µV, and the self-noise of the electrode is 2.48 nV @ 1 Hz. The AgCl layer on the surface of the electrode is porous and thick, and the particle size of AgCl is small and uniform. This makes the electrode have excellent electrochemical performance. All the experimental results show that the electrode has ultra-low noise and excellent response to low frequency weak electric field signals. The electrode is of great significance to the exploitation of marine resources as the marine electric field sensor.