UV-adVISor: Attention-Based Recurrent Neural Networks to Predict UV-Vis Spectra.

Ultraviolet-visible (UV-Vis) absorption spectra are routinely collected as part of high-performance liquid chromatography (HPLC) analysis systems and can be used to identify chemical reaction products by comparison to the reference spectra. Here, we present UV-adVISor as a new computational tool for predicting the UV-Vis spectra from a molecule's structure alone. UV-Vis prediction was approached as a sequence-to-sequence problem. We utilized Long-Short Term Memory and attention-based neural networks with Extended Connectivity Fingerprint Diameter 6 or molecule SMILES to generate predictive models for the UV spectra. We have produced two spectrum datasets (dataset I, N = 949, and dataset II, N = 2222) using different compound collections and spectrum acquisition methods to train, validate, and test our models. We evaluated the prediction accuracy of the complete spectra by the correspondence of wavelengths of absorbance maxima and with a series of statistical measures (the best test set median model parameters are in parentheses for model II), including RMSE (0.064), R2 (0.71), and dynamic time warping (DTW, 0.194) of the entire spectrum curve. Scrambling molecule structures with the experimental spectra during training resulted in a degraded R2, confirming the utility of the approaches for prediction. UV-adVISor is able to provide fast and accurate predictions for libraries of compounds.

Quantifying the breakdown of the Born-Oppenheimer approximation in surface chemistry.

The Born-Oppenheimer Approximation (BOA) forms the basis for calculating electronically adiabatic potential energy surfaces, thus providing the framework for developing a molecular level understanding of a variety of important chemical problems. For surface chemistry at metal surfaces, it is now clear that for some processes electronically nonadiabatic effects can be important, even dominant; however, the magnitude of BOA breakdown may vary widely from one chemical system to another. In this paper we show that molecular-beam surface scattering experiments can be used to derive quantitative information about the magnitude of BOA breakdown. A state-to-state rate model is used to interpret the pre-exponential factor of the well-known Arrhenius surface temperature dependence of the electronically nonadiabatic vibrational excitation. We also show that reference to a "thermal limit" provides a quick and simple rule of thumb for quantifying BOA breakdown. We demonstrate this approach by comparing electronically nonadiabatic vibrational inelasticity for NO(ν = 0 → 1) to NO(ν = 15 →ν'≪ 15) and show that the electronically nonadiabatic coupling strengths are of a similar magnitude. We compare experiments for NO and HCl scattering from Au(111) and derive the quantitative relative magnitude for the electronically nonadiabatic influences in each system. The electronically nonadiabatic influences are 300-400 times larger for NO than for HCl, for incidence energies near 0.9 eV.

Vibrationally promoted electron emission at a metal surface: electron kinetic energy distributions.

We report the first direct measurement of the kinetic energy of exoelectrons produced by collisions of vibrationally excited molecules with a low work function metal surface exhibiting electron excitations of 64% (most probable) and 95% (maximum) of the initial vibrational energy. This remarkable efficiency for vibrational-to-electronic energy transfer is in good agreement with previous results suggesting the coupling of multiple vibrational quanta to a single electron.

On the temperature dependence of electronically non-adiabatic vibrational energy transfer in molecule-surface collisions.

Here we extend a recently introduced state-to-state kinetic model describing single- and multi-quantum vibrational excitation of molecular beams of NO scattering from a Au(111) metal surface. We derive an analytical expression for the rate of electronically non-adiabatic vibrational energy transfer, which is then employed in the analysis of the temperature dependence of the kinetics of direct overtone and two-step sequential energy transfer mechanisms. We show that the Arrhenius surface temperature dependence for vibrational excitation probability reported in many previous studies emerges as a low temperature limit of a more general solution that describes the approach to thermal equilibrium in the limit of infinite interaction time and that the pre-exponential term of the Arrhenius expression can be used not only to distinguish between the direct overtone and sequential mechanisms, but also to deduce their relative contributions. We also apply the analytical expression for the vibrational energy transfer rates introduced in this work to the full kinetic model and obtain an excellent fit to experimental data, the results of which show how to extract numerical values of the molecule-surface coupling strength and its fundamental properties.

Electron kinetic energies from vibrationally promoted surface exoemission: evidence for a vibrational autodetachment mechanism.

We report kinetic energy distributions of exoelectrons produced by collisions of highly vibrationally excited NO molecules with a low work function Cs dosed Au(111) surface. These measurements show that energy dissipation pathways involving nonadiabatic conversion of vibrational energy to electronic energy can result in electronic excitation of more than 3 eV, consistent with the available vibrational energy. We measured the dependence of the electron energy distributions on the translational and vibrational energy of the incident NO and find a clear positive correlation between final electron kinetic energy and initial vibrational excitation and a weak but observable inverse dependence of electron kinetic energy on initial translational energy. These observations are consistent with a vibrational autodetachment mechanism, where an electron is transferred to NO near its outer vibrational turning point and ejected near its inner vibrational turning point. Within the context of this model, we estimate the NO-to-surface distance for electron transfer.

Conversion of large-amplitude vibration to electron excitation at a metal surface.

Gaining insight into the nature and dynamics of the transition state is the essence of mechanistic investigations of chemical reactions, yet the fleeting configuration when existing chemical bonds dissociate while new ones form is extremely difficult to examine directly. Adiabatic potential-energy surfaces--usually derived using quantum chemical methods that assume mutually independent nuclear and electronic motion--quantify the fundamental forces between atoms involved in reaction and thus provide accurate descriptions of a reacting system as it moves through its transition state. This approach, widely tested for gas-phase reactions, is now also commonly applied to chemical reactions at metal surfaces. There is, however, some evidence calling into question the correctness of this theoretical approach for surface reactions: electronic excitation upon highly exothermic chemisorption has been observed, and indirect evidence suggests that large-amplitude vibrations of reactant molecules can excite electrons at metal surfaces. Here we report the detection of 'hot' electrons leaving a metal surface as vibrationally highly excited NO molecules collide with it. Electron emission only occurs once the vibrational energy exceeds the surface work function, and is at least 10,000 times more efficient than the emissions seen in similar systems where large-amplitude vibrations were not involved. These observations unambiguously demonstrate the direct conversion of vibrational to electronic excitation, thus questioning one of the basic assumptions currently used in theoretical approaches to describing bond-dissociation at metal surfaces.

New insights for mesospheric OH: multi-quantum vibrational relaxation as a driver for non-local thermodynamic equilibrium.

The question of whether mesospheric OH(υ) rotational population distributions are in equilibrium with the local kinetic temperature has been debated over several decades. Despite several indications for the existence of non-equilibrium effects, the general consensus has been that emissions originating from low rotational levels are thermalized. Sky spectra simultaneously observing several vibrational levels demonstrated reproducible trends in the extracted OH(υ) rotational temperatures as a function of vibrational excitation. Laboratory experiments provided information on rotational energy transfer and direct evidence for fast multi-quantum OH(high-υ) vibrational relaxation by O atoms. We examine the relationship of the new relaxation pathways with the behavior exhibited by OH(υ) rotational population distributions. Rapid OH(high-υ) + O multi-quantum vibrational relaxation connects high and low vibrational levels and enhances the hot tail of the OH(low-υ) rotational distributions. The effective rotational temperatures of mesospheric OH(υ) are found to deviate from local thermodynamic equilibrium for all observed vibrational levels.

An advanced molecule-surface scattering instrument for study of vibrational energy transfer in gas-solid collisions.

We describe an advanced and highly sensitive instrument for quantum state-resolved molecule-surface energy transfer studies under ultrahigh vacuum (UHV) conditions. The apparatus includes a beam source chamber, two differential pumping chambers, and a UHV chamber for surface preparation, surface characterization, and molecular beam scattering. Pulsed and collimated supersonic molecular beams are generated by expanding target molecule mixtures through a home-built pulsed nozzle, and excited quantum state-selected molecules were prepared via tunable, narrow-band laser overtone pumping. Detection systems have been designed to measure specific vibrational-rotational state, time-of-flight, angular and velocity distributions of molecular beams coming to and scattered off the surface. Facilities are provided to clean and characterize the surface under UHV conditions. Initial experiments on the scattering of HCl(v = 0) from Au(111) show many advantages of this new instrument for fundamental studies of the energy transfer at the gas-surface interface.

Generation of tunable narrow bandwidth nanosecond pulses in the deep ultraviolet for efficient optical pumping and high resolution spectroscopy.

Nanosecond optical pulses with high power and spectral brightness in the deep ultraviolet (UV) region have been produced by sum frequency mixing of nearly transform-limited-bandwidth IR light originating from a home-built injection-seeded ring cavity KTiOPO(4) optical parametric oscillator (OPO) and the fourth harmonic beam of an injection-seeded Nd:YAG laser used simultaneously to pump the OPO with the second harmonic. We demonstrate UV output, tunable from 204 to 207 nm, which exhibits pulse energies up to 5 mJ with a bandwidth better than 0.01 cm(-1). We describe how the approach shown in this paper can be extended to wavelengths shorter than 185 nm. The injection-seeded OPO provides high conversion efficiency (>40% overall energy conversion) and superior beam quality required for highly efficient downstream mixing where sum frequencies are generated in the UV. The frequency stability of the system is excellent, making it highly suitable for optical pumping. We demonstrate high resolution spectroscopy as well as optical pumping using laser-induced fluorescence and stimulated emission pumping, respectively, in supersonic pulsed molecular beams of nitric oxide.

Vibrationally promoted electron emission from low work-function metal surfaces.

We observe electron emission when vibrationally excited NO molecules with vibrational state v, in the range of 9 < or = v < or =18, are scattered from a Cs-dosed Au surface. The quantum efficiency increases strongly with v, increasing up to 10(-2) electrons per NO (v) collision, a value several orders of magnitude larger than that observed in experiments with similar molecules in the ground vibrational state. The electron emission signal, as a function of v, has a threshold where the vibrational excitation energy slightly exceeds the surface work function. This threshold behavior strongly suggests that we are observing the direct conversion of NO vibrational energy into electron kinetic energy. Several potential mechanisms for the observed electron emission are explored, including (1) vibrational autodetachment, (2) an Auger-type two-electron process, and (3) vibrationally promoted dissociation. The results of this work provide direct evidence for nonadiabatic energy-transfer events associated with large amplitude vibrational motion at metal surfaces.