Detalhe da pesquisa
1.
Fundamental behaviors emerge from simulations of a living minimal cell.
Cell
; 185(2): 345-360.e28, 2022 01 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35063075
2.
A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions.
Proc Natl Acad Sci U S A
; 119(14): e2114397119, 2022 04 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35312342
3.
Impact of natural selection on global patterns of genetic variation and association with clinical phenotypes at genes involved in SARS-CoV-2 infection.
Proc Natl Acad Sci U S A
; 119(21): e2123000119, 2022 05 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-35580180
4.
Fostering discoveries in the era of exascale computing: How the next generation of supercomputers empowers computational and experimental biophysics alike.
Biophys J
; 122(14): 2833-2840, 2023 07 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-36738105
5.
Molecular Origins of Force-Dependent Protein Complex Stabilization during Bacterial Infections.
J Am Chem Soc
; 145(1): 70-77, 2023 01 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-36455202
6.
NAMD goes quantum: an integrative suite for hybrid simulations.
Nat Methods
; 15(5): 351-354, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29578535
7.
Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories.
J Chem Phys
; 153(13): 134104, 2020 Oct 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-33032427
8.
Scalable molecular dynamics on CPU and GPU architectures with NAMD.
J Chem Phys
; 153(4): 044130, 2020 Jul 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-32752662
9.
Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.
Nano Lett
; 19(6): 3415-3421, 2019 06 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-30346175
10.
Population FBA predicts metabolic phenotypes in yeast.
PLoS Comput Biol
; 13(9): e1005728, 2017 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-28886026
11.
Enhanced sampling techniques in molecular dynamics simulations of biological systems.
Biochim Biophys Acta
; 1850(5): 872-877, 2015 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-25450171
12.
Single-molecule force stability of the SARS-CoV-2-ACE2 interface in variants-of-concern.
Nat Nanotechnol
; 19(3): 399-405, 2024 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-38012274
13.
Molecular de-extinction of ancient antimicrobial peptides enabled by machine learning.
Cell Host Microbe
; 31(8): 1260-1274.e6, 2023 08 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37516110
14.
GSAFold: a new application of GSA to protein structure prediction.
Proteins
; 80(9): 2305-10, 2012 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-22622959
15.
Mining for encrypted peptide antibiotics in the human proteome.
Nat Biomed Eng
; 6(1): 67-75, 2022 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-34737399
16.
Accelerating antibiotic discovery through artificial intelligence.
Commun Biol
; 4(1): 1050, 2021 09 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-34504303
17.
Impact of natural selection on global patterns of genetic variation, and association with clinical phenotypes, at genes involved in SARS-CoV-2 infection.
medRxiv
; 2021 Aug 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34230933
18.
Kinetic Modeling of the Genetic Information Processes in a Minimal Cell.
Front Mol Biosci
; 6: 130, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-31850364
19.
Author Correction: Mining for encrypted peptide antibiotics in the human proteome.
Nat Biomed Eng
; 6(12): 1451, 2022 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-36456858