Mechanistic Insights into the Evolution of Graphitic Carbon from Sulfur Containing Polar Aromatic Feedstock.

In the realm of carbon fiber research, a variety of structural configurations is noted, comprising crystalline, noncrystalline, and semicrystalline forms. Recent investigations into this domain have revealed an array of intriguing phases of carbon, among which amorphous graphite is the most notable for its unique mechanical, thermal, and electrical properties that arise from its inherent topological disorders. In this study, we utilized the ReaxFF molecular dynamics (MD) simulations to investigate the carbonization and graphitization processes involved in the production of amorphous graphite from benzothiophene, a sulfur-containing polar aromatic precursor. We developed C/H/S ReaxFF force field parameters to describe the high-temperature chemistry of benzothiophene. Our investigation reveals the reaction mechanisms, providing critical insights into the underlying chemical processes toward the formation of amorphous graphite and the structural characteristics of the end products. The formation of volatile gaseous molecules and their continuous elimination led to the development of noncontinuous layered graphite structures analogous to amorphous graphite consisting of pentagons, hexagons, and heptagons. These findings offer unprecedented insights into the carbonization and graphitization processes of sulfur-containing heavy-end aromatic feedstock. This knowledge lays the groundwork for advancing synthesis methods and developing amorphous graphite materials with specific properties.

Role of bacteriophages in shaping gut microbial community.

Phages are the most diversified and dominant members of the gut virobiota. They play a crucial role in shaping the structure and function of the gut microbial community and consequently the health of humans and animals. Phages are found mainly in the mucus, from where they can translocate to the intestinal organs and act as a modulator of gut microbiota. Understanding the vital role of phages in regulating the composition of intestinal microbiota and influencing human and animal health is an emerging area of research. The relevance of phages in the gut ecosystem is supported by substantial evidence, but the importance of phages in shaping the gut microbiota remains unclear. Although information regarding general phage ecology and development has accumulated, detailed knowledge on phage-gut microbe and phage-human interactions is lacking, and the information on the effects of phage therapy in humans remains ambiguous. In this review, we systematically assess the existing data on the structure and ecology of phages in the human and animal gut environments, their development, possible interaction, and subsequent impact on the gut ecosystem dynamics. We discuss the potential mechanisms of prophage activation and the subsequent modulation of gut bacteria. We also review the link between phages and the immune system to collect evidence on the effect of phages on shaping the gut microbial composition. Our review will improve understanding on the influence of phages in regulating the gut microbiota and the immune system and facilitate the development of phage-based therapies for maintaining a healthy and balanced gut microbiota.

In silico design of an epitope-based vaccine against PspC in Streptococcus pneumoniae using reverse vaccinology.

BACKGROUND: Streptococcus pneumoniae is a major pathogen that poses a significant hazard to global health, causing a variety of infections including pneumonia, meningitis, and sepsis. The emergence of antibiotic-resistant strains has increased the difficulty of conventional antibiotic treatment, highlighting the need for alternative therapies such as multi-epitope vaccines. In this study, immunoinformatics algorithms were used to identify potential vaccine candidates based on the extracellular immunogenic protein Pneumococcal surface protein C (PspC). METHOD: The protein sequence of PspC was retrieved from NCBI for the development of the multi-epitope vaccine (MEV), and potential B cell and T cell epitopes were identified. Linkers including EAAAK, AAY, and CPGPG were used to connect the epitopes. Through molecular docking, molecular dynamics, and immunological simulation, the affinity between MEV and Toll-like receptors was determined. After cloning the MEV construct into the PET28a ( +) vector, SnapGene was used to achieve expression in Escherichia coli. RESULT: The constructed MEV was discovered to be stable, non-allergenic, and antigenic. Microscopic interactions between ligand and receptor are confirmed by molecular docking and molecular dynamics simulation. The use of an in-silico cloning approach guarantees the optimal expression and translation efficiency of the vaccine within an expression vector. CONCLUSION: Our study demonstrates the potential of in silico approaches for designing effective multi-epitope vaccines against S. pneumoniae. The designated vaccine exhibits the required physicochemical, structural, and immunological characteristics of a successful vaccine against SPN. However, laboratory validation is required to confirm the safety and immunogenicity of the proposed vaccine design.

Elucidating Synergistic Mechanisms of Adsorption and Electrocatalysis of Polysulfides on Double-Transition Metal MXenes for Na-S Batteries.

Multiple unfavorable features, such as poor electronic conductivity of sulfur cathodes, the dissolution and shuttling of sodium polysulfides (Na2Sn) in electrolytes, and the slower kinetics for the decomposition of solid Na2S, make sodium-sulfur batteries (NaSBs) impractical. To overcome these obstacles, novel double-transition metal (DTM) MXenes, Mo2TiC2T2, (T = O and S) are studied as an anchoring material (AM) to immobilize higher-order polysulfides and to expedite the otherwise slower kinetics of insoluble short-chain polysulfides. Density functional theory (DFT) calculations are carried out to justify and compare the effectiveness of Mo2TiC2S2 and Mo2TiC2O2 as AMs by analyzing their interactions with S8/Na2Sn (n = 1, 2, 4, 6, and 8). Mo2TiC2S2 provides moderate adsorption strength compared to Mo2TiC2O2, therefore, it is expected to effectively inhibit Na2Sn dissolution and shuttling without causing decomposition of Na2Sn. The calculated Gibbs free energies of the rate-determining step for sulfur reduction reactions (SRR) are found to be significantly lower (0.791 eV for S and 0.628 eV for O functionalization) than that in vacuum (1.442 eV), suggesting that the SRR is more thermodynamically favorable on Mo2TiC2T2 during discharge. Additionally, both Mo2TiC2S2 and Mo2TiC2O2 demonstrated effective electrocatalytic activity for the decomposition of Na2S, with a substantial reduction in the energy barrier to 1.59 eV for Mo2TiC2S2 and 1.67 eV for Mo2TiC2O2. While Mo2TiC2O2 had superior binding properties, structural distortion is observed in Na2Sn, which may adversely affect cyclability. On the other hand, because of its moderate binding energy, enhanced electronic conductivity, and significantly faster oxidative decomposition kinetics of polysulfides, Mo2TiC2S2 can be considered as an effective AM for suppressing the shuttle effect and improving the performance of NaSBs.