Detalhe da pesquisa
1.
Integrating physics in deep learning algorithms: a force field as a PyTorch module.
Bioinformatics
; 40(4)2024 Mar 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-38514422
2.
b2bTools: online predictions for protein biophysical features and their conservation.
Nucleic Acids Res
; 49(W1): W52-W59, 2021 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-34057475
3.
In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention.
Bioinformatics
; 37(20): 3473-3479, 2021 Oct 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33983381
4.
ShiftCrypt: a web server to understand and biophysically align proteins through their NMR chemical shift values.
Nucleic Acids Res
; 48(W1): W36-W40, 2020 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-32459331
5.
Accurate prediction of protein beta-aggregation with generalized statistical potentials.
Bioinformatics
; 36(7): 2076-2081, 2020 04 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31904854
6.
Insight into the protein solubility driving forces with neural attention.
PLoS Comput Biol
; 16(4): e1007722, 2020 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-32352965
7.
Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates.
Bioinformatics
; 35(22): 4617-4623, 2019 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30994888
8.
Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping.
Bioinformatics
; 34(18): 3118-3125, 2018 09 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-29684140
9.
DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins.
Nucleic Acids Res
; 45(W1): W201-W206, 2017 07 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-28498993
10.
SVM-dependent pairwise HMM: an application to protein pairwise alignments.
Bioinformatics
; 33(24): 3902-3908, 2017 Dec 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28666322
11.
Investigating the Molecular Mechanisms Behind Uncharacterized Cysteine Losses from Prediction of Their Oxidation State.
Hum Mutat
; 38(1): 86-94, 2017 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-27667481
12.
Clustering-based model of cysteine co-evolution improves disulfide bond connectivity prediction and reduces homologous sequence requirements.
Bioinformatics
; 31(8): 1219-25, 2015 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25492406
13.
Wetting Behavior Driven by Surface Morphology Changes Induced by Picosecond Laser Texturing.
Materials (Basel)
; 17(8)2024 Apr 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-38673077
14.
Prediction of Disordered Regions in Proteins with Recurrent Neural Networks and Protein Dynamics.
J Mol Biol
; 434(12): 167579, 2022 06 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-35469832
15.
PyUUL provides an interface between biological structures and deep learning algorithms.
Nat Commun
; 13(1): 961, 2022 02 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35181656
16.
HPMPdb: A machine learning-ready database of protein molecular phenotypes associated to human missense variants.
Curr Res Struct Biol
; 4: 167-174, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35669450
17.
Role and therapeutic potential of liquid-liquid phase separation in amyotrophic lateral sclerosis.
J Mol Cell Biol
; 13(1): 15-28, 2021 04 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-32976566
18.
Structure-based machine-guided mapping of amyloid sequence space reveals uncharted sequence clusters with higher solubilities.
Nat Commun
; 11(1): 3314, 2020 07 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32620861
19.
Auto-encoding NMR chemical shifts from their native vector space to a residue-level biophysical index.
Nat Commun
; 10(1): 2511, 2019 06 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-31175284
20.
Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis.
Sci Rep
; 9(1): 16932, 2019 11 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-31729443