Detalhe da pesquisa
1.
IDESS: a toolbox for identification and automated design of stochastic gene circuits.
Bioinformatics
; 39(11)2023 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-37988145
2.
A Kinetic Finite Volume Discretization of the Multidimensional PIDE Model for Gene Regulatory Networks.
Bull Math Biol
; 86(2): 22, 2024 01 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-38253903
3.
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws.
BMC Bioinformatics
; 23(1): 1, 2022 Jan 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-34983366
4.
Stochastic SIR model predicts the evolution of COVID-19 epidemics from public health and wastewater data in small and medium-sized municipalities: A one year study.
Chaos Solitons Fractals
; 164: 112671, 2022 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-36091637
5.
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.
Bioinformatics
; 36(5): 1640-1641, 2020 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31609384
6.
CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks.
Bioinformatics
; 36(12): 3922-3924, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32289149
7.
Automated engineering of synthetic metabolic pathways for efficient biomanufacturing.
Metab Eng
; 63: 61-80, 2021 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-33316374
8.
Solving the Competitive Binding Equilibria between Many Ligands: Application to High-Throughput Screening and Affinity Optimization.
Anal Chem
; 92(18): 12630-12638, 2020 09 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32812419
9.
SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
Bioinformatics
; 34(5): 893-895, 2018 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29040384
10.
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.
PLoS Comput Biol
; 13(4): e1005454, 2017 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-28369103
11.
SYNBADm: a tool for optimization-based automated design of synthetic gene circuits.
Bioinformatics
; 32(21): 3360-3362, 2016 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-27402908
12.
Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting.
J Theor Biol
; 421: 51-70, 2017 05 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-28341132
13.
Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems.
IEEE/ACM Trans Comput Biol Bioinform
; 20(3): 1971-1982, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-36449576
14.
Automated design of gene circuits with optimal mushroom-bifurcation behavior.
iScience
; 26(6): 106836, 2023 Jun 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-37255663
15.
Automated Design of Synthetic Gene Circuits in the Presence of Molecular Noise.
ACS Synth Biol
; 12(10): 2865-2876, 2023 10 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-37812682
16.
Fast biofoundries: coping with the challenges of biomanufacturing.
Trends Biotechnol
; 40(7): 831-842, 2022 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-35012773
17.
OptDesign: Identifying Optimum Design Strategies in Strain Engineering for Biochemical Production.
ACS Synth Biol
; 11(4): 1531-1541, 2022 04 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-35389631
18.
Wastewater and marine bioindicators surveillance to anticipate COVID-19 prevalence and to explore SARS-CoV-2 diversity by next generation sequencing: One-year study.
Sci Total Environ
; 833: 155140, 2022 Aug 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35421481
19.
Automated Biocircuit Design with SYNBADm.
Methods Mol Biol
; 2229: 119-136, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-33405218
20.
Synthetic Gene Circuit Analysis and Optimization.
Methods Mol Biol
; 2189: 89-103, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-33180296