The Program for Biodiversity Research in Brazil: The role of regional networks for biodiversity knowledge, dissemination, and conservation.

The Program for Biodiversity Research (PPBio) is an innovative program designed to integrate all biodiversity research stakeholders. Operating since 2004, it has installed long-term ecological research sites throughout Brazil and its logic has been applied in some other southern-hemisphere countries. The program supports all aspects of research necessary to understand biodiversity and the processes that affect it. There are presently 161 sampling sites (see some of them at Supplementary Appendix), most of which use a standardized methodology that allows comparisons across biomes and through time. To date, there are about 1200 publications associated with PPBio that cover topics ranging from natural history to genetics and species distributions. Most of the field data and metadata are available through PPBio web sites or DataONE. Metadata is available for researchers that intend to explore the different faces of Brazilian biodiversity spatio-temporal variation, as well as for managers intending to improve conservation strategies. The Program also fostered, directly and indirectly, local technical capacity building, and supported the training of hundreds of undergraduate and graduate students. The main challenge is maintaining the long-term funding necessary to understand biodiversity patterns and processes under pressure from global environmental changes.

Large-scale Degradation of the Tocantins-Araguaia River Basin.

The Tocantins-Araguaia Basin is one of the largest river systems in South America, located entirely within Brazilian territory. In the last decades, capital-concentrating activities such as agribusiness, mining, and hydropower promoted extensive changes in land cover, hydrology, and environmental conditions. These changes are jeopardizing the basin's biodiversity and ecosystem services. Threats are escalating as poor environmental policies continue to be formulated, such as environmentally unsustainable hydropower plants, large-scale agriculture for commodity production, and aquaculture with non-native fish. If the current model persists, it will deepen the environmental crisis in the basin, compromising broad conservation goals and social development in the long term. Better policies will require thought and planning to minimize growing threats and ensure the basin's sustainability for future generations.

Effects of crowding due to habitat loss on species assemblage patterns.

Terrestrial animals are negatively affected by habitat loss, which is assessed on a landscape scale, whereas secondary effects of habitat loss, such as crowding, are usually disregarded. Such impacts are inherently hard to address and poorly understood, and there is a growing concern that they could have dire consequences. We sampled birds throughout a deforestation process to assess crowding stress in an adjacent habitat remnant in the southern Brazilian Atlantic Forest. Crowding is expected of highly mobile taxa, especially given the microhabitat heterogeneity of Neotropical forests, and we hypothesized that the arrival of new individuals or species in refuges shifts assemblage patterns. We used point counts to obtain bird abundances in a before-after-control-impact design sampling of a deforestation event. Temporal changes in taxonomic and functional diversity were examined with metrics used to assess alpha and beta diversity, turnover of taxonomic and functional similarity, and taxonomic and functional composition. Over time increased abundance of some species altered the Simpson index and affected the abundance-distribution of traits in the habitat remnant. Taxonomic composition and functional composition changed in the remnant, and thus bird assemblages changed over time. Taxonomic and functional metrics indicated that fugitives affected resident assemblages in refuges, and effects endured >2 years after the deforestation processes had ceased. Dissimilarity of taxonomic composition between pre- and postdeforestation assemblages increased, whereas functional composition reverted to preimpact conditions. We found that ecological disruptions resulted from crowding and escalated into disruptions of species' assemblages and potentially compromising ecosystem functioning. It is important to consider crowding effects of highly mobile taxa during impact assessments, especially in large-scale infrastructure projects that may affect larger areas than is assumed.

Efectos del Amontonamiento debido a la Pérdida del Hábitat sobre los Patrones de Ensamblaje de las Especies Resumen Los animales terrestres se ven afectados negativamente por la pérdida del hábitat, la cual es evaluada con una escala de paisaje, mientras que los efectos secundarios de la pérdida del hábitat, como el amontonamiento, suelen ser ignorados. Dichos impactos son inherentemente difíciles de tratar y su entendimiento es muy pobre, además de que existe una preocupación creciente por las posibles consecuencias graves que podrían tener. Muestreamos aves durante un proceso de deforestación para evaluar el estrés por amontonamiento en un hábitat remanente contiguo a la parte sur del Bosque Atlántico Brasileño. Se espera que el amontonamiento ocurra en taxones con mucha movilidad, especialmente en el caso de los heterogéneos bosques Neotropicales, por lo que nuestra hipótesis consistió en suponer que la llegada a los refugios de nuevos individuos o especies modifica los patrones de ensamblado. Usamos el conteo por puntos para obtener la abundancia de las aves en un diseño de muestreo de antes-después-control-impacto de un evento de deforestación. Examinamos los cambios temporales en la diversidad taxonómica y funcional con medidas usadas para evaluar la diversidad alfa y beta, la rotación de la similitud taxonómica y funcional y la composición taxonómica y funcional. Con el tiempo, el incremento en la abundancia de algunas especies alteró el índice Simpson y afectó la abundancia y distribución de los caracteres en el hábitat remanente. La composición taxonómica y la composición funcional cambiaron en el hábitat remanente, por lo que los ensamblajes de aves cambiaron con el tiempo. Las medidas taxonómicas y funcionales indicaron que los individuos fugitivos afectaron a los ensamblajes de residentes en los refugios y sus efectos perduraron más de dos años después de que el proceso de deforestación había culminado. La disparidad de la composición taxonómica entre los ensamblajes antes y después de la deforestación incrementó, mientras que la composición funcional se revirtió a las condiciones previas al impacto. Encontramos que las perturbaciones ecológicas resultaron en el amontonamiento de especies y después escalaron hasta llegar a ser perturbaciones en el ensamblaje de las especies y potencial empobrecimiento del funcionamiento del ecosistema. Es importante considerar los efectos del amontonamiento de los taxones con mucha movilidad durante las evaluaciones de impacto ambiental, especialmente para proyectos con infraestructuras a gran escala que podrían afectar a un área mayor a la supuesta inicialmente.

Nutrient enrichment is related to two facets of beta diversity for stream invertebrates across the United States.

Beta diversity, the spatial or temporal variability of species composition, is a key concept in community ecology. However, our ability to predict the relative importance of the main drivers of beta diversity (e.g., environmental heterogeneity, dispersal limitation, and environmental productivity) remains limited. Using a comprehensive data set on stream invertebrate assemblages across the continental United States, we found a hump-shaped relationship between beta diversity and within-ecoregion nutrient concentrations. Within-ecoregion compositional dissimilarity matrices were mainly related to environmental distances in most of the 30 ecoregions analyzed, suggesting a stronger role for species-sorting than for spatial processes. The strength of these relationships varied considerably among ecoregions, but they were unrelated to within-ecoregion environmental heterogeneity or spatial extent. Instead, we detected a negative correlation between the strength of species sorting and nutrient concentrations. We suggest that eutrophication is a major mechanism disassembling invertebrate assemblages in streams at a continental scale.

Assessing the water quality in a World Heritage Site using biomarkers in top fish predators.

The use of biomarkers in fish for biomonitoring is a valuable approach to reveal effects of human impacts on biota health. Top predator fish are effective models for monitoring human activities' impacts on aquatic ecosystems. The Guaraguaçu River is the largest river-system on coastal region of South Brazil and a World Heritage site. The river receives contaminants from disorderly urban growth, including discharges of domestic sewage and small fishery boats, particularly during the tourist season. Our study aimed to assess impact of anthropogenic activities on water quality in the Guaraguaçu River by analyzing environmental contamination biomarkers in the top fish predator Hoplias malabaricus. Fish were collected using a fyke net trap across sectors representing a gradient of anthropic impact: sector 1 - pristine; sector 2 - impacted; and sector 3 - less impacted. Water samples were collected to analyze the presence of trace elements and pesticide. Biomarkers of the antioxidant system, histopathology, genotoxicity, neurotoxicity, and concentration of trace elements were analyzed in fish tissues. In water samples Al, Fe and Mn were detected, but no pesticides were found. In fish muscle, zinc and iron were detected. Brain acetylcholinesterase activity decreased in impacted sectors, indicating neurotoxic effects. The antioxidant system increased activity in gills and liver, and damage from lipoperoxidation was observed, particularly in sector 2 when compared to sector 1, suggesting oxidative stress. Histopathological biomarkers revealed lesions in the liver and gills of fish in impacted sectors. Micronuclei, a genotoxicity biomarker, were observed in organisms from all sectors. Our results demonstrate detrimental effects of poor water quality on biota health, even when contaminants are not detected in water.

Community stability and seasonal biotic homogenisation emphasize the effect of the invasive tropical tanner grass on macrophytes from a highly dynamic neotropical tidal river.

We described the spatial and temporal dynamics of aquatic macrophytes in a Neotropical coastal estuarine river, and identified the negative effects associated to the presence and dominance of the invasive tanner grass. We compared macrophyte beds along the Guaraguaçu River (South Brazil) over four years, using taxonomic and functional dimensions. Biodiversity descriptors were higher in the driest periods compared to the rainiest, although this difference seems to be decreasing over the studied years. Moreover, the spatial organization of biodiversity and community structure slightly changed over time. Such spatial community stability was highlighted by the dominance of the highly invasive tanner grass. In beds dominated by the invasive species, the biodiversity was reduced. As aquatic macrophytes represent an important group in water bodies, the long-term loss of seasonal differences in community structuring is of concern, mainly regarding its potential to impact other groups and ecosystem functioning. By analysing data from standardized monitoring, we were able to identify a poorly discussed facet of biotic homogenisation-the seasonal homogenisation. We also discussed the impact of massive development of invasive species and its consequences for biodiversity in a Neotropical river of outmost importance for biological conservation. Supplementary Information: The online version contains supplementary material available at 10.1007/s00027-022-00858-3.

Toxicological effects of anthropogenic activities in Geophagus brasiliensis from a coastal river of southern Brazil: A biomarker approach.

This study aimed to assess the water quality of the Perequê River, Porto Belo, Santa Catarina, Brazil, through a biomarker approach in the native fish species Geophagus brasiliensis, and the sediment chemical quantification of the herbicides glyphosate and bentazone used in irrigated rice plantations. This river is used for the public water supply of two municipalities. The first sampling (S1) was in November 2016, in the spring season and the second (S2), in March 2017, in the fall season. In each sampling, two points of the river were analyzed, one upstream of the accumulation dam and the water catchment point for water supply of the Porto Belo WTS (P1), and another downstream (P2) with water, sediment, and fish sampling. Biotransformation, oxidative stress, histopathological and genotoxic biomarkers were analyzed in different tissues. The presence of glyphosate was detected in the sediment (11.7 µg·kg-1) from the upstream point of the water catchment site (P1) in spring. The lower activity of the antioxidant enzyme superoxide dismutase (SOD), as well as the increased damage to renal DNA and hepatic tissue, coincided with the lower muscular and cerebral acetylcholinesterase activities (AChE) at P1, in relation to P2 in the spring season, with a lower rainfall index (81.8 mm3). A seasonal variation was also observed between the spring and fall seasons, in fish responses to biomarkers. Reduction of muscle AChE activity and biotransformation enzymes ethoxyresorufin-O-deethylase and glutathione S-transferase and antioxidant enzymes such as, SOD and glutathione peroxidase, as well as increased brain DNA damage, coincided with the highest number of tissue lesions in the liver and gills in the spring, regardless of the sampling point. The results suggested that the Perequê River is contaminated by xenobiotics and probably herbicides from irrigated rice plantations, indicating damages to the biota and a potential public health risk.

Neurotoxins in a water supply reservoir: An alert to environmental and human health.

Reservoirs are important source of power generation, recreation, and water supply. Nevertheless, human activities have favored the bloom of toxic cyanobacteria in many reservoirs, which has resulted in environmental, social, and economic problems. This study aims to evaluate the water quality of a reservoir in South Brazil through the analysis of cyanobacteria and cyanotoxins PSTs (Paralytic Shellfish Toxins) and biomarkers of environmental contamination in fish. For this purpose, water samples and fish (Geophagus brasiliensis) (Perciformes: Cichlidae) were collected from September 2013 to May 2014. The fish G. brasiliensis were separated in two groups. The first one "site group" was euthanized after the sampling and their weight and length were measured. The blood, brain, muscle and liver were collected for chemical, biochemical and genetics biomarkers analysis. The second group "depuration group" was submitted to depuration experiment for 40 days in clean water. After that, the same procedures as for the first group were carried out. Cylindrospermopsis raciborskii was the dominant cyanobacteria found in the reservoir, and it showed a density above the recommended limit by Brazilian legislation of 20,000 cells/mL. Results showed that the fish accumulate PSTs in the Reservoir and these were not eliminated after 40 days. The biochemical and genotoxic biomarkers showed a significant difference between "site groups" and "depuration groups", which suggests a recovery of the antioxidant system and a reduction of cellular damage after 40 days in clean water. In conjunction with results reported earlier by others, Alagados Reservoir, in South Brazil, appears to have a persistent contamination of cyanotoxins. Moreover, the mixture of contaminants which may be present in the water body can explain the seasonal differences in fish at the sampled points.

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss.

The increasing number of quantitative assessments of homogenization using citizen science data is particularly important in the Neotropics, given its high biodiversity and ecological peculiarity, and whose communities may react differently to landscape changes. We looked for evidence of taxonomic homogenization in terrestrial birds by investigating patterns of beta diversity along a gradient of human-altered landscapes (HAL), trying to identify species associated with this process. We analyzed bird data from 87 sites sampled in a citizen science program in the south Brazilian Atlantic Forest. Regional-scale taxonomic homogenization was assessed by comparing beta diversity among sites in different HALs (natural, rural or urban landscapes) accounting for variation derived from geographical distance and zoogeographical affinities by georeferencing sites and determining their position in a phytogeographical domain. Beta diversity was calculated by multivariate dispersion and by testing compositional changes due to turnover and nestedness among HALs and phytogeographical domains. Finally, we assessed which species were typical for each group using indicator species analysis. Bird homogenization was indicated by decreases in beta diversity following landscape changes. Beta diversity of rural sites was roughly half that of natural habitats, while urban sites held less than 10% of the natural areas' beta diversity. Species composition analysis revealed that the turnover component was important in differentiating sites depending on HAL and phytogeography; the nestedness component was important among HALs, where directional species loss is maintained even considering effects of sampling effort. A similar result was obtained among phytogeographical domains, indicating nested-pattern dissimilarity among compositions of overlapping communities. As expected, a few native generalists and non-native urban specialists were characteristic of rural and urban sites. We generated strong evidence that taxonomic homogenization occurs in the south Brazilian Atlantic Forest as a result of a directional and nested species loss, with the resultant assemblages composed of few disturbance-tolerant birds.

A checklist of aquatic macrophytes of the Guaraguaçu river basin reveals a target for conservation in the Atlantic rainforest

Describing and understanding distribution of species in natural ecosystems is the first step to establish conservation efforts. In aquatic habitats, macrophytes play a central role in promoting biodiversity and ecosystem functioning. This study aimed to create the first checklist of aquatic macrophyte species occurring in the Guaraguaçu river, the largest river in Paraná State coast, Brazil. Species herborized, identified and incorporated into the Herbarium collection of the Universidade Federal do Paraná. A total of 47 species were registered corresponding to 37 genera and 29 botanical families; Cyperaceae and Poaceae were the most representative families. In addition, the wide invasion of the non-native species Urochloa arrecta (Hack. ex T. Durand & Schinz) Morrone & Zuloaga was registered and the presence of the floating-leaved non-native species Nymphaea caerulea Savugny was recorded. Even so, the inventory shows a noteworthy richness of aquatic macrophytes species in the Guaraguaçu river, and it is clear macrophyte species reflect a gradient of anthropic impact and salinity in this tidal estuarine river. Our study contributes to the creation of public policies to aid in the protection of this river that represents a central site for biological conservation efforts, yet is constantly threatened by anthropic activities.

The study of fractals among ecologists / O estudo dos fractais entre os ecólogos

Fractals seemed to have permeated most scientific fields, including ecology. In fact, biodiversity and ecological processes are affected by spatial complexity, and fractals can help understand patterns at multiple scales. In this paper we evaluated the main quantitative trends and the profile of ecology publications using fractals. Publications about fractals in Ecology experienced a high increase in the last two decades, and most articles were published in highly visible ecology journals. However, studies were authored mainly by US scientists, and researchers from developing countries had a minor contribution. In addition, studies were highly biased towards terrestrial environments, and empirical approaches were preferred.

Os fractais pareciam ter permeado a maioria das áreas científicas, incluindo a ecologia. De fato, a biodiversidade e os processos ecológicos são afetados pela complexidade espacial, e os fractais podem ajudar a compreender esses padrões em múltiplas escalas. Neste trabalho avaliaram-se as principais tendências do perfil ecológico, bem como foram quantificadas as publicações utilizando fractais. Publicação sobre fractais em ecologia sofreram grande aumento nas últimas duas décadas e muitos artigos foram publicados em revistas de alta circulação. No entanto, os estudos foram escritos, principalmente, por americanos, e os pesquisadores de países em desenvolvimento tiveram contribuição menor. Além disso, os estudos foram desenvolvidos em sua maioria em ambientes terrestres, e as abordagens empíricas foram preferidas.