Molecular Dynamics and Near-Tg Phenomena of Cyclic Thioethers.

This article presents the synthesis and molecular dynamics investigation of three novel cyclic thioethers: 2,3-(4'-methylbenzo)-1,4,7,10-tetrathiacyclododeca-2-ene (compound 1), 2,3,14,15-bis(4',4″(5″)-methylbenzo)-1,4,7,10,13,16,19,22,25-octathiacyclotetracosa-2,14-diene (compound 2), and 2,3,8,9-bis(4',4″(5″)-methylbenzo)-1,4,7,10-tetrathiacyclododeca-2,8-diene (compound 3). The compounds exhibit relatively high glass transition temperatures (Tg), which range between 254 and 283 K. This characteristic positions them within the so-far limited category of crown-like glass-formers. We demonstrate that cyclic thioethers may span both the realms of ordinary and sizeable molecular glass-formers, each featuring distinct physical properties. Furthermore, we show that the Tg follows a sublinear power law as a function of the molar mass within this class of compounds. We also reveal multiple dielectric relaxation processes of the novel cyclic thioethers. Above the Tg, their dielectric loss spectra are dominated by a structural relaxation, which originates from the cooperative reorientation of entire molecules and exhibits an excess wing on its high-frequency slope. This feature has been attributed to the Johari-Goldstein (JG) process. Each investigated compound exhibits also at least one intramolecular secondary non-JG relaxation stemming from conformational changes. Their activation energies range from approximately 19 kJ/mol to roughly 40 kJ/mol. Finally, we analyze the high-pressure molecular dynamics of compound 1, revealing a pressure-induced increase in its Tg with a dTg/dp coefficient equal to 197 ± 8 K/GPa.

How differences in the molecular structure of monohydroxy alcohols affect the tendency to crystallization.

The tendency to crystallize was studied in the selected monohydroxy alcohols: 1-chloro-2-methyl-2-propanol, 1-chloro-2-propanol, 3-chloro-1-propanol, and 8-chloro-1-octanol. Performed calorimetric measurements have proved that the differences in structures of tested alcohols influence the tendency to crystallization. At a sufficiently fast heating rate, no crystallization was observed in the case of 1-chloro-2-propanol and 3-chloro-1-propanol, contrary to other two alcohols. The obtained results suggest that elongation of the alkyl chain or adding a methyl group to the hydrocarbon backbone increases the susceptibility to crystallization.

Simple Rules for Complex Near-Glass-Transition Phenomena in Medium-Sized Schiff Bases.

Glass-forming ability is one of the most desired properties of organic compounds dedicated to optoelectronic applications. Therefore, finding general structure-property relationships and other rules governing vitrification and related near-glass-transition phenomena is a burning issue for numerous compound families, such as Schiff bases. Hence, we employ differential scanning calorimetry, broadband dielectric spectroscopy, X-ray diffraction and quantum density functional theory calculations to investigate near-glass-transition phenomena, as well as ambient- and high-pressure molecular dynamics for two structurally related Schiff bases belonging to the family of glycine imino esters. Firstly, the surprising great stability of the supercooled liquid phase is shown for these compounds, also under high-pressure conditions. Secondly, atypical self-organization via bifurcated hydrogen bonds into lasting centrosymmetric dimers is proven. Finally, by comparing the obtained results with the previous report, some general rules that govern ambient- and high-pressure molecular dynamics and near-glass transition phenomena are derived for the family of glycine imino esters. Particularly, we derive a mathematical formula to predict and tune their glass transition temperature (Tg) and its pressure coefficient (dTg/dp). We also show that, surprisingly, despite the presence of intra- and intermolecular hydrogen bonds, van der Waals and dipole-dipole interactions are the main forces governing molecular dynamics and dielectric properties of glycine imino esters.

APEX Strategy Represented by Diels-Alder Cycloadditions-New Opportunities for the Syntheses of Functionalised PAHs.

Diels-Alder cycloaddition of various dienophiles to the bay region of polycyclic aromatic hydrocarbons (PAHs) is a particularly effective and useful tool for the modification of the structure of PAHs and thereby their final properties. The Diels-Alder cycloaddition belongs to the single-step annulative π-extension (APEX) reactions and represents the maximum in synthetic efficiency for the constructions of π-extended PAHs including functionalised ones, nanographenes, and π-extended fused heteroarenes. Herein we report new applications of the APEX strategy for the synthesis of derivatives of 1,2-diarylbenzo[ghi]perylene, 1,2-diarylbenzo[ghi]perylenebisimide and 1,2-disubstituted-benzo[j]coronene. Namely, the so far unknown cycloaddition of 1,2-diarylacetylenes into the perylene and perylenebisimide bay regions was used. 1,2-Disubstituted-benzo[j]coronenes were obtained via cycloaddition of benzyne into 1,2-diarylbenzo[ghi]perylenes by using a new highly effective system for benzyne generation and/or high pressure conditions. Moreover, we report an unprecedented Diels-Alder cycloaddition-cycloaromatisation domino-type reaction between 1,4-(9,9-dialkylfluoren-3-yl)-1,3-butadiynes and perylene. The obtained diaryl-substituted core-extended PAHs were characterised by DFT calculation as well as electrochemical and spectroscopic measurements.

Conformational analysis and molecular dynamics of glass-forming aromatic thiacrown ethers.

In this work, we report the synthesis, unexpected glass-forming properties, molecular dynamics and conformational analysis of two thiacrown ethers: 6-methyl-2,3-dihydro-1,4-benzodithiine (1), with a six-membered heterocyclic ring, and macrocyclic 2,3-(4'-methylbenzo)-1,4-dithia-7-oxacyclononane (2). Based on the calorimetric studies, we showed that compound 1 is a viscous liquid at room temperature undergoing vitrification at 192 K. Compound 2 is a crystalline solid at room temperature characterized by a melting point at 331 K; however, it can be vitrified with ease after being melted by cooling down to 224 K. This gave us the unique possibility to analyze the dielectric response and to follow the molecular dynamics in supercooled liquid and glassy states for each thiacrown ether. Two relaxation processes were found for compound 1, which are structural α-relaxation, connected with the collective rotational motions of molecules in a liquid, and a low-temperature secondary γ-process, resulting from conformational changes in the heterocyclic ring. Beside these two relaxation processes, an additional intermolecular ß-process of JG type was detected in the case of compound 2. Finally, based on the analysis of the thermal evolution of the Kirkwood-Fröhlich factor, it has also been shown that thiacrown ethers may be characterized by a local ordering between neighboring molecules in the supercooled liquid state.

Glassy dynamics predicted by mutual role of free and activation volumes.

Broadband Dielectric Spectroscopy (BDS) at elevated pressures and Positron Annihilation Lifetime Spectroscopy (PALS) are employed to elucidate the importance of the ratio of activation and free volumes during vitrification. We show that this ratio has a linear correlation with the structural relaxation of glass forming liquids in a wide temperature range hence engendering it as a vital input in the description of the dynamic glass transition.

Inflection point in the Debye relaxation time of 2-butyl-1-octanol.

We report a striking anomaly in the pressure dependent Debye-relaxation time of the branched monohydroxy alcohol 2-butyl-1-octanol. Evidence of a crossover from slower to faster than exponential pressure dependency was obtained at different temperatures via high pressure broadband dielectric spectroscopy. At the same time, viscosity measurements reveal similar behavior in the viscosity, respectively, the structural relaxation time, indicating a similar origin of the phenomena.

The peculiar behavior of the molecular dynamics of a glass-forming liquid confined in native porous materials - the role of negative pressure.

In this paper, we combine Broadband Dielectric Spectroscopy (BDS) at ambient and high pressure, and positron annihilation lifetime spectroscopy (PALS) data of 2-ethylhexanol in the bulk state and when infiltrated in native silica nanopores to elucidate the relative role of surface effects on the Debye and structural relaxation processes under 2D spatial constraints. We show that the two processes have different sensitivities to (i) the changes in density as quantified by the EV/Hp ratio and (ii) the degree of confinement. Significant enhancement of the dynamics of the confined molecules at low temperatures is related to the vitrification of the interfacial molecules (Tg,int) affecting the packing density of the core molecules. This is corroborated by the PALS measurements, which demonstrated that the effective volume for the confined samples is slightly higher and seems to be temperature invariant below Tg,int. Consequently, negative pressure systematically develops with lowering temperature reaching values of -100 and -110 MPa (depending on the pore size) at the glass transition temperature. This result offers a better understanding of the counterbalance between surface and finite size effects as well as the role of negative pressure in controlling the dynamics and the glass transition of liquids under 2D spatial restrictions.

Temperature- and pressure-dependent studies of niccolite-type formate frameworks of [NH3(CH2)4NH3][M2(HCOO)6] (M = Zn, Co, Fe).

We report temperature-dependent electric, IR and Raman studies of niccolite-type formate frameworks templated by protonated 1,4-diaminobutane. Our results show that the zinc-analogue exhibits a first-order phase transition close to 240 K. Single-crystal dielectric data show a much stronger anomaly at the phase transition for ε' along the a-direction compared to the c-direction. They also reveal that dipole relaxation exists in bnZn. Pronounced temperature-dependence observed for bending and torsion modes of the NH3+ groups proves that ordering of protonated amine plays a major role in the phase transition mechanism. The ordering is associated with distortion of the zinc formate framework but the number of observed vibrational modes is much smaller than expected assuming 36-fold multiplication of the unit cell below TC. It is also much smaller than reported for the Mn-analogue, which exhibits only a two-fold increase of the unit cell below TC. We discuss the origin of this behavior. Our results also show that the Co-analogue exhibits a similar phase transition to its Zn-counterpart. However, the observed narrowing and splitting of the corresponding bands is significantly smaller, suggesting weaker distortion of the framework and the presence of some disorder for this compound even at 5 K. The Raman and IR spectra of the Fe-analogue show weak narrowing of bands upon cooling, indicative of statistical freezing of the protonated amine at low temperatures. We also report high-pressure Raman scattering studies of the zinc-analogue. This study revealed a pressure-induced reversible phase transition between 3.4 and 4.1 GPa. Large shifts and splitting of modes corresponding to the vibrations of HCOO- ions associated with weak changes of the protonated amine prove that the major contribution to the phase transition mechanism comes from distortion of the zinc formate framework.

Fractional Debye-Stokes-Einstein behaviour in an ultraviscous nanocolloid: glycerol and silver nanoparticles.

One of the major features of glass forming ultraviscous liquids is the decoupling between translational and orientational dynamics. This paper presents studies of this phenomenon in glycerol, an accepted molecular glass former, concentrating on the impact of two exogenic factors: high pressures (P) up to the extreme 1.5 GPa and silver (Ag) nanoparticles (NPs). The analysis is focused on the fractional Debye-Stokes-Einstein (FDSE) relationship: σ(T,P)(τ(T,P))(S) = const, linking DC electric conductivity (σ) and primary (alpha, structural) relaxation time (τα). In glycerol and its nanocolloid (glycerol + Ag NPs) at atmospheric pressure only negligible decoupling (S ∼ 1) was detected. However, in the compressed nanocolloid, a well-defined transformation (at P = 1.2 GPa) from S ∼ 1 to the very strongly decoupled dynamics (S ∼ 0.5) occurred. For comparison, in pressurized 'pure' glycerol the stretched shift from S ∼ 1 to S ∼ 0.7 took place. This paper also presents the general discussion of FDSE behavior in ultraviscous liquids, including the new link between the FDSE exponent, fragility and the apparent activation enthalpy and volume.

High-Pressure and Temperature Effects on the Clustering Ability of Monohydroxy Alcohols.

This study examined the clustering behavior of monohydroxy alcohols, where hydrogen-bonded clusters of up to a hundred molecules on the nanoscale can form. By performing X-ray diffraction experiments at different temperatures and under high pressure, we investigated how these conditions affect the ability of alcohols to form clusters. The pioneering high-pressure experiment performed on liquid alcohols contributes to the emerging knowledge in this field. Implementation of molecular dynamics simulations yielded excellent agreement with the experimental results, enabling the analysis of theoretical models. Here we show that at the same global density achieved either by alteration of pressure or temperature, the local aggregation of molecules at the nanoscale may significantly differ. Surprisingly, high pressure not only promotes the formation of hydrogen-bonded clusters but also induces the serious reorganization of molecules. This research represents a milestone in understanding association under extreme thermodynamic conditions in other hydrogen bonding systems such as water.

Revisiting Dynamic Processes and Relaxation Mechanisms in a Heterocyclic Glass-Former: Direct Observation of a Transient State.

Despite decades of studies, a clear understanding of near-Tg phenomena remains challenging for glass-forming systems. This review delves into the intricate molecular dynamics of the small, heterocyclic thioether, 6-methyl-2,3-dihydro-1,4-benzodithiine (MeBzS2), with a particular focus on its near-Tg cold crystallization and relaxation mechanisms. Investigating isothermal crystallization kinetics at various temperatures reveals a significant interplay between its molecular dynamics and recrystallization from a supercooled liquid. We also identify two independent interconversion paths between energetically privileged conformers, characterized by strained transition states. We demonstrate that these spatial transformations induce substantial alterations in the dipole moment orientation and magnitude. Our investigation also extends to the complex salt PdCl2(MeBzS2), where we observe the transient conformers directly, revealing a direct relationship between their abundance and the local or macroscopic electric field. The initially energetically privileged isomers in an undisturbed system become less favored in the presence of an external electric field or ions, resulting even in an unexpected inversion of states. Consequently, we confirm the intramolecular character of secondary relaxation in MeBzS2 and its mechanism related to conformational changes within the heterocyclic ring. The research is based on the combination of broadband dielectric spectroscopy, X-ray diffraction, and quantum density functional theory calculations.

Normal-to-Supercooled Liquid Transition in Molecular Glass-Formers: A Hidden Structural Transformation Fuelled by Conformational Interconversion.

Molecular dynamics and transport coefficients change significantly around the so-called Arrhenius crossover in glass-forming systems. In this article, we revisit the dynamic processes occurring in a glass-forming macrocyclic crown thiaether MeBzS2O above its glass transition, revealing two crossover temperatures: TB at 309 and TA at 333 K. We identify the second one as the Arrhenius crossover that is closely related to the normal-to-supercooled liquid transition in this compound. We show that the transformation occurring at this point goes far beyond molecular dynamics (where the temperature dependence of structural relaxation times changes its character from activation-like to super-Arrhenius), being reflected also in the internal structure and diffraction pattern. In this respect, we found a twofold local organization of the nearest-neighbor molecules via weak van der Waals forces, without the formation of any medium-range order or mesophases. The nearest surrounding of each molecule evolves structurally in time due to the ongoing fast conformational changes. We identify several conformers of MeBzS2O, demonstrating that its lowest-energy conformation is preferred mainly at lower temperatures, i.e., in the supercooled liquid state. Its increased prevalence modifies locally the short-range intermolecular order and promotes vitrification. Consequently, we indicate that the Arrhenius transition is fuelled rather by conformational changes in this glass-forming macrocyclic crown thiaether, which is a different scenario from the so-far existing concepts. Our studies combine broadband dielectric spectroscopy (BDS), X-ray diffraction, Fourier transform infrared (FTIR) spectroscopy, molecular dynamics (MD) simulations, and density functional theory (DFT) calculations.

Pressure-Induced Aggregation of Associating Liquids as a Driving Force Enhancing Hydrogen Bond Cooperativity.

The behavior of hydrogen bonds under extreme pressure is still not well understood. Until now, the shift of the stretching vibration band of the X-H group (X = the donor atom) in infrared spectra has been attributed to the variation in the length of the covalent X-H bond. Herein, we combined infrared spectroscopy and X-ray diffraction experimental studies of two H-bonded liquid hexane derivatives, i.e., 2-ethyl-1-hexanol and 2-ethyl-1-hexylamine, in diamond anvil cells at pressures up to the GPa level, with molecular dynamics simulations covering similar thermodynamic conditions. Our findings revealed that the observed changes in the X-H stretching vibration bands under compression are not primarily due to H-bond shortening resulting from increased density but mainly due to cooperative enhancement of H-bonds caused by intensified molecular clustering. This sheds new light on the nature of H-bond interactions and the structure of liquid molecular systems under compression.

Glassy dynamics and physical aging in fucose saccharides as studied by infrared- and broadband dielectric spectroscopy.

Fourier Transform Infra Red (FTIR) and Broadband Dielectric Spectroscopy (BDS) are combined to study both the intra- and inter-molecular dynamics of two isomers of glass forming fucose, far below and above the calorimetric glass transition temperature, T(g). It is shown that the various IR-active vibrations exhibit in their spectral position and oscillator strength quite different temperature dependencies, proving their specific signature in the course of densification and glass formation. The coupling between intra- and inter molecular dynamics is exemplified by distinct changes in IR active ring vibrations far above the calorimetric glass transition temperature at about 1.16T(g), where the dynamic glass transition (α relaxation) and the secondary ß relaxation merge. For physically annealed samples it is demonstrated that upon aging the different moieties show characteristic features as well, proving the necessity of atomistic descriptions beyond coarse-grained models.

Computer simulations as an effective way to distinguish supramolecular nanostructure in cyclic and phenyl alcohols.

Molecular dynamics simulations supported by x-ray-diffraction experimental data were utilized to demonstrate how replacing the cyclic ring with the phenyl one in molecules of alcohols significantly differentiates their nanostructure by reducing the number of H-bonded clusters. Besides, molecules in the phenyl alcohols associate themselves in clusters via phenyl ring organization which likely is the result of OH⋯π and π⋯π interactions. Thus, at room temperature, the supramolecular structure of phenyl alcohols is more heterogeneous and governed by the formation of various clusters arising due to three types of interactions, while in cyclic alcohols, the H bonding controls the association of molecules. We believe that our methodology could be applied to better understand the fundamental process of association via H bonding and the competitive aggregation caused by phenyl rings.

Experimental and Computational Approach to Studying Supramolecular Structures in Propanol and Its Halogen Derivatives.

A series of four alcohols, n-propanol and its halogen (Cl, Br, and I) derivatives, were selected to study the effects of variation in polarity and halogen-driven interactions on the hydrogen bonding pattern and supramolecular structure by means of experimental and theoretical methods. It was demonstrated on both grounds that the average strength of H-bonds remains the same but dissociation enthalpy, the size of molecular nanoassemblies, as well as long-range correlations between dipoles vary with the molecular weight of halogen atom. Further molecular dynamics simulations indicated that it is connected to the variation in the molecular order introduced by specific halogen-based hydrogen bonds and halogen-halogen interactions. Our results also provided important experimental evidence supporting the assumption of the transient chain model on the molecular origin of the structural process in self-assembling alcohols.

Supramolecular Structure of Phenyl Derivatives of Butanol Isomers.

Wide-angle X-ray scattering patterns were recorded for a series of aliphatic butanol isomers (n-, iso-, sec-, tert-butanol) and their phenyl derivatives (4-phenyl-1-butanol, 2-methyl-3-phenyl-1-propanol, 4-phenyl-2-butanol, and 2-methyl-1-phenyl-2-propanol, respectively) to determine their atomic-scale structure with particular emphasis on the formation of supramolecular clusters. In addition, molecular dynamics simulations were carried out and yielded good agreement with experimental data. The combination of experimental and theoretical results allowed clarification of the origin of the pre-peak appearing at low scattering angles for the aliphatic butanols and its absence for their phenyl counterparts. It was demonstrated that the location of the hydroxyl group in the molecule of alkyl butanol, its geometry, and rigidity determine the morphology of the supramolecular clusters, while the addition of the aromatic moiety causes more disordered organization of molecules. The phenyl group significantly decreases the number of hydrogen bonds and size of the supramolecular clusters formed via the O-H···O scheme. The lower association ability of phenyl alcohols via H-bonds is additionally attenuated by the appearance of competing π-π configurations evidenced by the structural models.

A study of OH···O hydrogen bonds along various isolines in 2-ethyl-1-hexanol. Temperature or pressure - which parameter controls their behavior?

The nature of H-bonding interactions is still far from being understood despite intense experimental and theoretical studies on this subject carried out by the leading research centers. In this paper, by a combination of unique high-pressure infrared, dielectric and volumetric data, the intramolecular dynamics of hydroxyl moieties (which provides direct information about H-bonds) was studied along various isolines, i.e., isotherms, isobars, isochrones, and isochores, in a simple monohydroxy alcohol (2-ethyl-1-hexanol). This allowed us to discover that the temperature controls the intermolecular hydrogen bonds, which then affect the intramolecular dynamics of OH units. Although the role of density fluctuations gets stronger as temperature rises. We also demonstrated a clear connection between the intra- and intermolecular dynamics of the associating liquid at high pressure. The data reported herein open a new perspective to explore this important aspect of the glass transition phenomenon and understand H-bonding interactions at varying thermodynamic conditions.

Communication: Thermodynamic scaling of the Debye process in primary alcohols.

The molecular dynamics of hydrogen-bonded liquids usually does not satisfy the thermodynamic scaling. However, very recently, two opposite conclusions about validity of thermodynamical scaling in monohydroxy alcohol, 2-ethyl-1-hexanol, were presented by Reiser et al. [J. Chem. Phys. 132, 181101 (2010)] and Fragiadakis et al. [J. Chem. Phys. 132, 144505 (2010)]. In this communication we present new experimental results that can explain this ostensible contradiction.