Scale-free movement patterns in termites emerge from social interactions and preferential attachments.

As the number or density of interacting individuals in a social group increases, a transition can develop from uncorrelated and disordered behavior of the individuals to a collective coherent pattern. We expand this observation by exploring the fine details of termite movement patterns to demonstrate that the value of the scaling exponent µ of a power law describing the Lévy walk of an individual is modified collectively as the density of animals in the group changes. This effect is absent when termites interact with inert obstacles. We also show that the network of encounters and interactions among specific individuals is selective, resembling a preferential attachment mechanism that is important for social networking. Our data strongly suggest that preferential attachments, a phenomenon not reported previously, and favorite interactions with a limited number of acquaintances are responsible for the generation of Lévy movement patterns in these social insects.

Phase transitions in insect swarms.

In contrast with laboratory insect swarms, wild insect swarms display significant coordinated behaviour. It has been hypothesised that the presence of a fluctuating environment drives the formation of transient, local order (synchronized subgroups), and that this local order pushes the swarm into a new state that is robust to environmental perturbations. The hypothesis is supported by observations of swarming mosquitoes. Here I provide numerical evidence that the formation of transient, local order is an accidental by-product of the strengthening of short-range repulsion which is expected in the presence of environmental fluctuations. The results of the numerical simulations reveal that this strengthening of the short-range can drive swarms into a crystalline phase containing subgroups that participate in cooperative ring exchanges-a new putative form of collective animal movement lacking velocity correlation. I thereby demonstrate that the swarm state and structure may be tuneable with environmental noise as a control parameter. Predicted properties of the collective modes are consistent with observations of transient synchronized subgroups in wild mosquito swarms that contend with environmental disturbances. When mutual repulsion becomes sufficiently strong, swarms are, in accordance with observations, predicted to form near stationary crystalline states. The analysis suggests that the many different forms of swarming motions observed across insect species are not distinctly different phenomena but are instead different phases of a single phenomenon.

Stochasticity may generate coherent motion in bird flocks.

Murmurations along with other forms of flocking have come to epitomize collective animal movements. Most studies into these stunning aerial displays have aimed to understand how coherent motion may emerge from simple behavioral rules and behavioral correlations. These studies may now need revision because recently it has been shown that flocking birds, like swarming insects, behave on the average as if they are trapped in elastic potential wells. Here I show, somewhat paradoxically, how coherent motion can be generated by variations in the intensity of multiplicative noise which causes the shape of a potential well to change, thereby shifting the positions and strengths of centres of attraction. Each bird, irrespective of its position in the flock will respond in a similar way to such changes, giving the impression that the flock behaves as one, and typically resulting in scale-free correlations. I thereby show how correlations can be an emergent property of noisy, confining potential wells. I also show how such wells can lead to high density borders, a characteristic of flocks, and I show how they can account for the complex patterns of collective escape patterns of starling flocks under predation. I suggest swarming and flocking do not constitute two distinctly different kinds of collective behavior but rather that insects are residing in relatively stable potential wells whilst birds are residing in unstable potential wells. It is shown how, dependent upon individual perceptual capabilities, bird flocks can be poised at criticality.

Swarm formation as backward diffusion.

Considerable progress has been made in understanding insect swarms-forms of collective animal behaviour that unlike bird flocks, fish schools and animal herds do not possess global order. Nonetheless, little is known about swarm formation. Here we posit a mechanism for the formation of insect swarms that is consistent with recent empirical observations reported by (Patel and Ouellette 2022). It correctly predicts new features of swarm formation that have not been reported on previously. Our simple analytically tractable model shows how harmonic potential wells, a characteristic feature of swarming, and so swarm cohesion, arise from diffusion and local fission-fusion dynamics and how, in accord with observations, these wells deepen over time. The overall form of these potential wells is predicted to depend on the number and spatial distribution of all individuals, making them manifestly a collective phenomenon. Finally, swarms are predicted to 'cool' (that is, condense) as they form.

Mosquito swarms shear harden.

Recently Cavagna et al. (Sci Rep 13(1): 8745, 2023) documented the swarming behaviors of laboratory-based Anopheles gambiae mosquitoes. Here key observations from this 3D-video tracking study are reproduced by a minimally structured (maximum entropy) stochastic trajectory model. The modelling shows that in contrast with midge swarms which are a form of collective behavior, unperturbed mosquito swarms are more like collections of individuals that independently circulate around a fixed location. The modelling predicts the observed response Anopheles gambiae mosquitoes in wild swarms to varying wind speeds (Butail et al. in J Med Entomol 50(3): 552-559, 2013). It is shown that this response can be attributed to shear hardening. This is because mosquitoes are found to be attracted to the centre of the swarm by an effective force that increases with increasing flight speed. Mosquitoes can therefore better resist the influence of environmental disturbances by increasing their flight speeds. This contrasts with other emergent mechanical-like properties of swarming which arise accidentally without a change in an individual's behavior. The new results add to the growing realization that perturbations can drive swarms into more robust states.

Comment on 'A physics perspective on collective animal behavior' 2022Phys. Biol.19 021004.

In his insightful and timely review Ouellette (2022Phys. Biol.19021004) noted three theoretical impediments to progress in understanding and modelling collective animal behavior. Here through novel analyses and by drawing on the latest research I show how these obstacles can be either overcome or negated. I suggest ways in which recent advances in the physics of collective behavior provide significant biological information.

Weierstrassian Lévy walks are a by-product of crawling.

Weierstrassian Lévy walks are one of the simplest random walks which do not satisfy the central limit theorem and have come to epitomize scale invariance even though they were initially regarded as being a mathematical abstraction. Here, I show how these Lévy walks can be generated intrinsically as a by-product of crawling, a common but ancient form of locomotion. This may explain why Weierstrassian Lévy walks provide accurate representations of the movement patterns of a diverse group of molluscs-certain mussels, mud snails and limpets. I show that such movements are not specific to molluscs as they are also evident in Drosophila larvae. The findings add to the growing realization that there are many idiosyncratic, seemingly accidental pathways to Lévy walking. And that the occurrence of Lévy walks need not be attributed to the execution of an advantageous searching strategy.

Intrinsic stochasticity and the emergence of collective behaviours in insect swarms.

Intrinsic stochasticity associated with finite population size is fundamental to the emergence of collective behaviours in insect swarms. It has been assumed that this intrinsic stochasticity is purely additive (position independent) in quiescent (unperturbed) swarms. Here, I identify the hallmarks of intrinsic multiplicative (position dependent) stochasticity and show that they are evident in quiescent laboratory swarms of the non-biting midge Chironomus riparius. In accordance with theoretical expectations, the smallest well-documented laboratory swarms (containing between 14 and 46 individuals) are found to have q-Gaussian density profiles with [Formula: see text] 1, whereas larger laboratory swarms have Gaussian ([Formula: see text]1) density profiles. I show that these newly identified states are analogous to interstellar clouds and thereby extend a long-standing analogy between insect swarms and self-gravitating systems. Smaller laboratory swarms have been observed and are predicted to be gas-like, filling the available space rather than occupying just a small proportion of it. The new results unify laboratory swarms with wild swarms. Unlike laboratory swarms, wild swarms must contend with environmental (extrinsic) noise and have density profiles that are accurately represented by q-Gaussians with [Formula: see text] 1. Finally, it is shown how intrinsic multiplicative noise allows for the nucleation of swarms away from prominent visual features (basins of attraction) known as swarm markers.

On the origin of the tensile strength of insect swarms.

Traditionally animal groups have been characterized by the macroscopic patterns that they form. It is now recognised that such patterns convey limited information about the nature of the aggregation as a whole. Aggregate properties cannot be determined by passive observations alone; instead one must interact with them. One of the first such dynamical tests revealed that swarms of flying insects have macroscopic mechanical properties similar to solids, including a finite Young's modulus and yield strength. Here I show, somewhat counterintuitively, that the emergence of these solid-like properties can be attributed to centre-of-mass movements (heat). This suggests that perturbations can drive phase transitions.

Chaotic Model for Lévy Walks in Swarming Bacteria.

We describe a new mechanism for Lévy walks, explaining the recently observed superdiffusion of swarming bacteria. The model hinges on several key physical properties of bacteria, such as an elongated cell shape, self-propulsion, and a collectively generated regular vortexlike flow. In particular, chaos and Lévy walking are a consequence of group dynamics. The model explains how cells can fine-tune the geometric properties of their trajectories. Experiments confirm the spectrum of these patterns in fluorescently labeled swarming Bacillus subtilis.

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication.

Advances in genome technology have facilitated a new understanding of the historical and genetic processes crucial to rapid phenotypic evolution under domestication. To understand the process of dog diversification better, we conducted an extensive genome-wide survey of more than 48,000 single nucleotide polymorphisms in dogs and their wild progenitor, the grey wolf. Here we show that dog breeds share a higher proportion of multi-locus haplotypes unique to grey wolves from the Middle East, indicating that they are a dominant source of genetic diversity for dogs rather than wolves from east Asia, as suggested by mitochondrial DNA sequence data. Furthermore, we find a surprising correspondence between genetic and phenotypic/functional breed groupings but there are exceptions that suggest phenotypic diversification depended in part on the repeated crossing of individuals with novel phenotypes. Our results show that Middle Eastern wolves were a critical source of genome diversity, although interbreeding with local wolf populations clearly occurred elsewhere in the early history of specific lineages. More recently, the evolution of modern dog breeds seems to have been an iterative process that drew on a limited genetic toolkit to create remarkable phenotypic diversity.

Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation.

Full sequencing of individual human genomes has greatly expanded our understanding of human genetic variation and population history. Here, we present a systematic analysis of 50 human genomes from 11 diverse global populations sequenced at high coverage. Our sample includes 12 individuals who have admixed ancestry and who have varying degrees of recent (within the last 500 years) African, Native American, and European ancestry. We found over 21 million single-nucleotide variants that contribute to a 1.75-fold range in nucleotide heterozygosity across diverse human genomes. This heterozygosity ranged from a high of one heterozygous site per kilobase in west African genomes to a low of 0.57 heterozygous sites per kilobase in segments inferred to have diploid Native American ancestry from the genomes of Mexican and Puerto Rican individuals. We show evidence of all three continental ancestries in the genomes of Mexican, Puerto Rican, and African American populations, and the genome-wide statistics are highly consistent across individuals from a population once ancestry proportions have been accounted for. Using a generalized linear model, we identified subtle variations across populations in the proportion of neutral versus deleterious variation and found that genome-wide statistics vary in admixed populations even once ancestry proportions have been factored in. We further infer that multiple periods of gene flow shaped the diversity of admixed populations in the Americas-70% of the European ancestry in today's African Americans dates back to European gene flow happening only 7-8 generations ago.

Artificial selection on brain-expressed genes during the domestication of dog.

Domesticated dogs have many unique behaviors not found in gray wolves that have augmented their interaction and communication with humans. The genetic basis of such unique behaviors in dogs remains poorly understood. We found that genes within regions highly differentiated between outbred Chinese native dogs (CNs) and wolves show high bias for expression localized to brain tissues, particularly the prefrontal cortex, a specific region responsible for complex cognitive behaviors. In contrast, candidate genes showing high population differentiation between CNs and German Shepherd dogs (GSs) did not demonstrate significant expression bias. These observations indicate that these candidate genes highly expressed in the brain have rapidly evolved. This rapid evolution was probably driven by artificial selection during the primary transition from wolves to ancient dogs and was consistent with the evolution of dog-specific characteristics, such as behavior transformation, for thousands of years.

Does the Australian desert ant Melophorus bagoti approximate a Lévy search by an intrinsic bi-modal walk?

We suggest that the Australian desert ant Melophorus bagoti approximates a Lévy search pattern by using an intrinsic bi-exponential walk and does so when a Lévy search pattern is advantageous. When attempting to locate its nest, M. bagoti adopt a stereotypical search pattern. These searches begin at the location where the ant expects to find the nest, and comprise loops that start and end at this location, and are directed in different azimuthal directions. Loop lengths are exponentially distributed when searches are in visually familiar surroundings and are well described by a mixture of two exponentials when searches are in unfamiliar landscapes. The latter approximates a power-law distribution, the hallmark of a Lévy search. With the aid of a simple analytically tractable theory, we show that an exponential loop-length distribution is advantageous when the distance to the nest can be estimated with some certainty and that a bi-exponential distribution is advantageous when there is considerable uncertainty regarding the nest location. The best bi-exponential search patterns are shown to be those that come closest to approximating advantageous Lévy looping searches. The bi-exponential search patterns of M. bagoti are found to approximate advantageous Lévy search patterns.

Genetic structure and domestication history of the grape.

The grape is one of the earliest domesticated fruit crops and, since antiquity, it has been widely cultivated and prized for its fruit and wine. Here, we characterize genome-wide patterns of genetic variation in over 1,000 samples of the domesticated grape, Vitis vinifera subsp. vinifera, and its wild relative, V. vinifera subsp. sylvestris from the US Department of Agriculture grape germplasm collection. We find support for a Near East origin of vinifera and present evidence of introgression from local sylvestris as the grape moved into Europe. High levels of genetic diversity and rapid linkage disequilibrium (LD) decay have been maintained in vinifera, which is consistent with a weak domestication bottleneck followed by thousands of years of widespread vegetative propagation. The considerable genetic diversity within vinifera, however, is contained within a complex network of close pedigree relationships that has been generated by crosses among elite cultivars. We show that first-degree relationships are rare between wine and table grapes and among grapes from geographically distant regions. Our results suggest that although substantial genetic diversity has been maintained in the grape subsequent to domestication, there has been a limited exploration of this diversity. We propose that the adoption of vegetative propagation was a double-edged sword: Although it provided a benefit by ensuring true breeding cultivars, it also discouraged the generation of unique cultivars through crosses. The grape currently faces severe pathogen pressures, and the long-term sustainability of the grape and wine industries will rely on the exploitation of the grape's tremendous natural genetic diversity.

Molecular evidence for a single evolutionary origin of domesticated rice.

Asian rice, Oryza sativa, is one of world's oldest and most important crop species. Rice is believed to have been domesticated ∼9,000 y ago, although debate on its origin remains contentious. A single-origin model suggests that two main subspecies of Asian rice, indica and japonica, were domesticated from the wild rice O. rufipogon. In contrast, the multiple independent domestication model proposes that these two major rice types were domesticated separately and in different parts of the species range of wild rice. This latter view has gained much support from the observation of strong genetic differentiation between indica and japonica as well as several phylogenetic studies of rice domestication. We reexamine the evolutionary history of domesticated rice by resequencing 630 gene fragments on chromosomes 8, 10, and 12 from a diverse set of wild and domesticated rice accessions. Using patterns of SNPs, we identify 20 putative selective sweeps on these chromosomes in cultivated rice. Demographic modeling based on these SNP data and a diffusion-based approach provide the strongest support for a single domestication origin of rice. Bayesian phylogenetic analyses implementing the multispecies coalescent and using previously published phylogenetic sequence datasets also point to a single origin of Asian domesticated rice. Finally, we date the origin of domestication at ∼8,200-13,500 y ago, depending on the molecular clock estimate that is used, which is consistent with known archaeological data that suggests rice was first cultivated at around this time in the Yangtze Valley of China.

Relative energy deficiency in dance (RED-D): a consensus method approach to REDs in dance.

Relative energy deficiency in sport (REDs) is a potentially severe, challenging, broad-spectrum syndrome with potential negative health and performance outcomes. The numerous research publications and International Olympic Committee consensus statements relating to REDs testify to the challenges faced in early identification or screening, diagnosis and management. Like sport, dance, in its simplest form, can be identified as an activity resulting in physiological energy demands and, as such, requires appropriate energy availability concerning energy expenditures. However, the specificity of physiological and psychological demands in dance must be considered when considering REDs. An environment where physical activity can exceed 30 hours per week and where culture may instil a value that thinness is required puts dancers at increased risk for REDs. The purpose of this study was to provide dance-specific guidance dance on this complex condition. An RAND/UCLA Delphi Panel method with nominal group technique was used to review the literature from REDs to evaluate how it may relate to dance. In addition to the EP, which was assembled from a multidisciplinary background with expertise in REDs and multiple genres of dance, six focus groups were commissioned. Four of the focus groups were drawn from the EP members and two additional focus groups formed by dancers and artistic leaders. These panels were used to guide the development of a RED-D diagnosis pathway, management plan and risk stratification and return to dance pathway. The dance-specific pathways are designed to be a practical tool for guiding and supporting clinicians managing RED-D. Furthermore, this paper represents an important focus of this area in dance and serves to stimulate discussion and further research within the sector.

Beating the odds in the aerial lottery: passive dispersers select conditions at takeoff that maximize their expected fitness on landing.

Passive airborne dispersal, in which the direction and distance of travel are determined by air movement, affects propagules and pollens, as well as mites, spiders, and small insect larvae. The takeoff or launch phase is, however, largely controlled, and many organisms become airborne only under particular weather conditions at takeoff, when the distribution of distances traveled will have a -3/2 power-law tail, a hallmark of Lévy flights. Here these movement patterns are shown to maximize the likelihood of dispersing to the nearest unoccupied site, thereby maximizing expected fitness on landing.

A simple genetic architecture underlies morphological variation in dogs.

Domestic dogs exhibit tremendous phenotypic diversity, including a greater variation in body size than any other terrestrial mammal. Here, we generate a high density map of canine genetic variation by genotyping 915 dogs from 80 domestic dog breeds, 83 wild canids, and 10 outbred African shelter dogs across 60,968 single-nucleotide polymorphisms (SNPs). Coupling this genomic resource with external measurements from breed standards and individuals as well as skeletal measurements from museum specimens, we identify 51 regions of the dog genome associated with phenotypic variation among breeds in 57 traits. The complex traits include average breed body size and external body dimensions and cranial, dental, and long bone shape and size with and without allometric scaling. In contrast to the results from association mapping of quantitative traits in humans and domesticated plants, we find that across dog breeds, a small number of quantitative trait loci (< or = 3) explain the majority of phenotypic variation for most of the traits we studied. In addition, many genomic regions show signatures of recent selection, with most of the highly differentiated regions being associated with breed-defining traits such as body size, coat characteristics, and ear floppiness. Our results demonstrate the efficacy of mapping multiple traits in the domestic dog using a database of genotyped individuals and highlight the important role human-directed selection has played in altering the genetic architecture of key traits in this important species.

Colloquium paper: genome-wide patterns of population structure and admixture among Hispanic/Latino populations.

Hispanic/Latino populations possess a complex genetic structure that reflects recent admixture among and potentially ancient substructure within Native American, European, and West African source populations. Here, we quantify genome-wide patterns of SNP and haplotype variation among 100 individuals with ancestry from Ecuador, Colombia, Puerto Rico, and the Dominican Republic genotyped on the Illumina 610-Quad arrays and 112 Mexicans genotyped on Affymetrix 500K platform. Intersecting these data with previously collected high-density SNP data from 4,305 individuals, we use principal component analysis and clustering methods FRAPPE and STRUCTURE to investigate genome-wide patterns of African, European, and Native American population structure within and among Hispanic/Latino populations. Comparing autosomal, X and Y chromosome, and mtDNA variation, we find evidence of a significant sex bias in admixture proportions consistent with disproportionate contribution of European male and Native American female ancestry to present-day populations. We also find that patterns of linkage-disequilibria in admixed Hispanic/Latino populations are largely affected by the admixture dynamics of the populations, with faster decay of LD in populations of higher African ancestry. Finally, using the locus-specific ancestry inference method LAMP, we reconstruct fine-scale chromosomal patterns of admixture. We document moderate power to differentiate among potential subcontinental source populations within the Native American, European, and African segments of the admixed Hispanic/Latino genomes. Our results suggest future genome-wide association scans in Hispanic/Latino populations may require correction for local genomic ancestry at a subcontinental scale when associating differences in the genome with disease risk, progression, and drug efficacy, as well as for admixture mapping.