The evolution and changing ecology of the African hominid oral microbiome.

The oral microbiome plays key roles in human biology, health, and disease, but little is known about the global diversity, variation, or evolution of this microbial community. To better understand the evolution and changing ecology of the human oral microbiome, we analyzed 124 dental biofilm metagenomes from humans, including Neanderthals and Late Pleistocene to present-day modern humans, chimpanzees, and gorillas, as well as New World howler monkeys for comparison. We find that a core microbiome of primarily biofilm structural taxa has been maintained throughout African hominid evolution, and these microbial groups are also shared with howler monkeys, suggesting that they have been important oral members since before the catarrhine-platyrrhine split ca. 40 Mya. However, community structure and individual microbial phylogenies do not closely reflect host relationships, and the dental biofilms of Homo and chimpanzees are distinguished by major taxonomic and functional differences. Reconstructing oral metagenomes from up to 100 thousand years ago, we show that the microbial profiles of both Neanderthals and modern humans are highly similar, sharing functional adaptations in nutrient metabolism. These include an apparent Homo-specific acquisition of salivary amylase-binding capability by oral streptococci, suggesting microbial coadaptation with host diet. We additionally find evidence of shared genetic diversity in the oral bacteria of Neanderthal and Upper Paleolithic modern humans that is not observed in later modern human populations. Differences in the oral microbiomes of African hominids provide insights into human evolution, the ancestral state of the human microbiome, and a temporal framework for understanding microbial health and disease.

Investigation of mammoth remains using the neutron activation analysis at the Training Reactor VR-1.

At the time when the importance of the interdisciplinary research increases, the nuclear analytical techniques supported by the small research reactors represent a useful tool for investigation of human society, culture, history etc. The historical, archaeological, and palaeontological samples and objects of cultural heritage can be easily studied using the radioanalytical methods such as the neutron activation analysis. This paper deals with the detailed investigation of fragments of mammoth remains from the Mid-Upper Palaeolithic site Pavlov VI by means of the instrumental neutron activation analysis at the Training Reactor VR-1 of the Czech Technical University in Prague. Six mammoth hard tissue samples (fragments of bones, tusk, and molar) from the Institute of Archaeology of the Czech Academy of Sciences were irradiated in the dry vertical irradiation channel with thermal neutron field (φ=2×109cm-2s-1) at maximum reactor power (80 W). The activated mammoth samples were analysed employing the nuclear γ-spectrometry and semiconductor HPGe detector, and the composition of the remains was determined (qualitative and quantitative analysis). The presence of Na, Cl, K, As, Fe, Sr, Mn, Br, I, Ba, and U was revealed in studied mammoth samples. Based on obtained production rates, the concentrations of Fe, Sr, Na, K, As, and U were determined. The results presented in this paper show clearly that the low-power Training Reactor VR-1 is excellent tool for the neutron activation analysis experiments within the interdisciplinary research and can provide experimental data important for archaeologists and palaeontologists.

A wolf from Gravettian site Pavlov I, Czech Republic: Approach to skull pathology.

OBJECTIVE: Describe pathological features on internal and external aspects of the skull of an ancient grey wolf. MATERIALS: Wolf remains that were found at the southwestern settlement Area A of Gravettian site Pavlov I. METHODS: Visual observation and description; microcomputed tomography; porosity and fragmentation indices for internal and external skull features; histological section of the fourth upper premolar tooth. RESULTS: Dorsally, the sagittal crest revealed bone healing and remodeling. The sagittal lesion differential diagnosis was blunt trauma with or without fracture. Ventrally, otic region pathology included severe proliferation and lysis (osteomyelitis). The pathology was not resolvable among differential (microbial) causes of osteomyelitis, although other potential etiologies were ruled out. CONCLUSIONS: Probable first report of otic region osteomyelitis in an ancient grey wolf. SIGNIFICANCE: The proximity of the wolf remains to human-related findings, and presence of red ochre and shells, suggest human involvement in the burial. LIMITATIONS: This is a single specimen with differential diagnoses that were not resolvable to a single definitive diagnosis. SUGGESTIONS FOR FURTHER RESEARCH: Further investigation of the possible anthropological significance of the burial circumstances.