East African cichlid lineages (Teleostei: Cichlidae) might be older than their ancient host lakes: new divergence estimates for the east African cichlid radiation.

BACKGROUND: Cichlids are a prime model system in evolutionary research and several of the most prominent examples of adaptive radiations are found in the East African Lakes Tanganyika, Malawi and Victoria, all part of the East African cichlid radiation (EAR). In the past, great effort has been invested in reconstructing the evolutionary and biogeographic history of cichlids (Teleostei: Cichlidae). In this study, we present new divergence age estimates for the major cichlid lineages with the main focus on the EAR based on a dataset encompassing representative taxa of almost all recognized cichlid tribes and ten mitochondrial protein genes. We have thoroughly re-evaluated both fossil and geological calibration points, and we included the recently described fossil †Tugenchromis pickfordi in the cichlid divergence age estimates. RESULTS: Our results estimate the origin of the EAR to Late Eocene/Early Oligocene (28.71 Ma; 95% HPD: 24.43-33.15 Ma). More importantly divergence ages of the most recent common ancestor (MRCA) of several Tanganyika cichlid tribes were estimated to be substantially older than the oldest estimated maximum age of the Lake Tanganyika: Trematocarini (16.13 Ma, 95% HPD: 11.89-20.46 Ma), Bathybatini (20.62 Ma, 95% HPD: 16.88-25.34 Ma), Lamprologini (15.27 Ma; 95% HPD: 12.23-18.49 Ma). The divergence age of the crown haplochromine H-lineage is estimated to 22.8 Ma (95% HPD: 14.40-26.32 Ma) and of the Lake Malawi radiation to 4.07 Ma (95% HDP: 2.93-5.26 Ma). In addition, we recovered a novel lineage within the Lamprologini tribe encompassing only Lamprologus of the lower and central Congo drainage with its divergence estimated to the Late Miocene or early Pliocene. Furthermore we recovered two novel mitochondrial haplotype lineages within the Haplochromini tribe: 'Orthochromis' indermauri and 'Haplochormis' vanheusdeni. CONCLUSIONS: Divergence time estimates of the MRCA of several Tanganyika cichlid tribes predate the age of the extant Lake Tanganyika basin, and hence are in line with the recently formulated "Melting-Pot Tanganyika" hypothesis. The radiation of the 'Lower Congo Lamprologus clade' might be linked with the Pliocene origin of the modern lower Congo rapids as has been shown for other Lower Congo cichlid assemblages. Finally, the age of origin of the Lake Malawi cichlid flock agrees well with the oldest age estimate for lacustrine conditions in Lake Malawi.

Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution.

The megadiverse haplochromine cichlid radiations of the East African lakes, famous examples of explosive speciation and adaptive radiation, are according to recent studies, introgressed by different riverine lineages. This study is based on the first comprehensive mitochondrial and nuclear DNA dataset from extensive sampling of riverine haplochromine cichlids. It includes species from the lower River Congo and Angolan (River Kwanza) drainages. Reconstruction of phylogenetic hypotheses revealed the paradox of clearly discordant phylogenetic signals. Closely related mtDNA haplotypes are distributed thousands of kilometres apart and across major African watersheds, whereas some neighbouring species carry drastically divergent mtDNA haplotypes. At shallow and deep phylogenetic layers, strong signals of hybridization are attributed to the complex Late Miocene/Early Pliocene palaeohistory of African rivers. Hybridization of multiple lineages across changing watersheds shaped each of the major haplochromine radiations in lakes Tanganyika, Victoria, Malawi and the Kalahari Palaeolakes, as well as a miniature species flock in the Congo basin (River Fwa). On the basis of our results, introgression occurred not only on a spatially restricted scale, but massively over almost the whole range of the haplochromine distribution. This provides an alternative view on the origin and exceptional high diversity of this enigmatic vertebrate group.

Congochromis rotundiceps sp. nov., a new cichlid species (Actinopterygii: Cichlidae) from the Congo Drainage.

A new dwarf cichlid, Congochromis rotundiceps sp. nov., (Cichliformes: Cichlidae) is described from the central Congo basin. It is a species of Congochromis based on the following characters: (1) four pores in the dentary laterosensory canal; (2) absence of a laterosensory canal in the angulo-articular, (3) six pores in the preopercle laterosensory canal; (4) a single tubular infraorbital bone behind the lachrymal; (5) 12 circumpeduncular scales; (6) jaw teeth comparatively robust, unicuspids, not closely spaced; and (7) presence of a small, supraneural bone. Congochromis rotundiceps sp. nov. is distinguished from all other Congochromis species by the combination of the following characters: (1) a larger eye diameter (31.435.1% HL), (2) a shorter snout length (29.832.7% HL), (3) a shorter upper lip length (29.232.0% HL), (4) a shorter lower lip length (26.233.6% HL), (5) a shorter lower lip width (27.731.2% HL), and (6) a shorter anal-fin length (15.316.97% SL). Diagnostic characters were extracted mainly from meristic counts and distance measurements from 326 chromidotilapiine cichlid specimens representing all chromidotilapiine genera and 40 described or undescribed species. The analysis of the complete meristic and distance measurements database allowed the diagnosis of C. rotundiceps sp. nov., but not for diagnostic separation of many other chromidotilapiine genera, species, and lineages. This result highlights the necessity to explore additional characters to elucidate chromidotilapiine cichlid taxonomy further.

First DNA barcode library for the ichthyofauna of the Jos Plateau (Nigeria) with comments on potential undescribed fish species.

Located in the central region of northern Nigeria, the Jos Plateau covers approximately 9,400 km² with an average altitude of 1,280 m and constitutes a unique terrestrial ecoregion known as the Jos Plateau forest-grassland mosaic. The biota of the Jos Plateau include endemic elements, but very limited information is available on its ichthyofauna. This is despite the fact that the ancient plateau contributes to several large rivers spanning multiple major drainage systems including the Niger and Benue Rivers, and Lake Chad. This study provides the first species list for the fishes of the Jos Plateau based mainly on 175 DNA barcoded museum voucher specimens representing 20 species, and another three species without a DNA barcode. In total, 23 species from eight families and 17 genera were collected from the Jos Plateau including five putatively new species, four in the family Cyprinidae and one in the Clariidae. With ten species, the Cyprinidae is the most diverse fish family on the Jos Plateau, followed by Clariidae and Cichlidae, each with three species. The study also provides data on species distribution and habitat parameters including information on water chemistry that strongly suggests that selected water bodies are heavily impacted by anthropogenic activities. Urgent management steps are required to preserve the unique and diverse fish communities of the Jos Plateau and their habitats.

Description of five new rheophilic Orthochromis species (Teleostei: Cichlidae) from the Upper Congo drainage in Zambia and the Democratic Republic of the Congo.

Five new rheophilic haplochromine cichlid species are described from the Upper Congo drainage of Zambia and the Democratic Republic of the Congo: Orthochromis mporokoso sp. nov. and O. katumbii sp. nov. from the Bangwelu-Mweru ecoregion, O. kimpala sp. nov. and O. gecki sp. nov. from the Upper Lualaba ecoregion, and O. indermauri sp. nov. from the Lufubu River of the Lake Tanganyika ecoregion. Orthochromis kimpala sp. nov, O. gecki sp. nov., and O. indermauri sp. nov. are distinguished from all currently valid species of the genus Orthochromis Greenwood 1954, except for O. torrenticola (Thys van den Audenaerde 1963), by the presence of eggspots or eggspot-like maculae on the anal fin (vs. no eggspots). The three species can be easily distinguished from O. torrenticola by having three anal spines (vs. four anal spines). Moreover, all five new species can be individually distinguished from all currently known rheophilic taxa placed in the genera Orthochromis, Schwetzochromis Poll 1948 and the rheophilic species of the genus Haplochromis Hilgendorf 1888 (e.g. H. bakongo Thys van den Audenaerde 1964, H. snoeksi Wamuini Lunkayilako Vreven 2010, H. vanheusdeni Schedel et al. 2014) either based on meristic values, morphometric distances and colouration patterns, or on a combination of them.