Electron-Donating Phenolic and Electron-Accepting Quinone Moieties in Peat Dissolved Organic Matter: Quantities and Redox Transformations in the Context of Peat Biogeochemistry.

Electron-donating phenolic and electron-accepting quinone moieties in peat dissolved organic matter (DOM) are considered to play key roles in processes defining carbon cycling in northern peatlands. This work advances a flow-injection analysis system coupled to chronoamperometric detection to allow for the simultaneous and highly sensitive determination of these moieties in dilute DOM samples. Analysis of anoxic pore water and oxic pool water samples collected across an ombrotrophic bog in Sweden demonstrated the presence of both phenolic and quinone moieties in peat DOM. The pore water DOM had higher quantities of phenolic but not quinone moieties compared with commonly used model aquatic and terrestrial DOM isolates. Significantly lower phenol content in DOM from oxic pools than DOM from anoxic pore waters indicated oxidative DOM processing in the pools. Consistently, treatment of peat DOM with laccase, a phenol-oxidase, under oxic conditions resulted in an irreversible removal of phenols and reversible oxidation of hydroquinones to quinones. Electron transfer to peat DOM was fully reversible over an electrochemical reduction and subsequent O2-reoxidation cycle, supporting that quinones in peat DOM serve as regenerable microbial electron acceptors in peatlands. The results advance our understanding of redox processes involving phenolic and quinone DOM moieties and their roles in northern peatland carbon cycling.

Oxidation of Reduced Peat Particulate Organic Matter by Dissolved Oxygen: Quantification of Apparent Rate Constants in the Field.

Peat particulate organic matter (POM) is an important terminal electron acceptor for anaerobic respiration in northern peatlands provided that the electron-accepting capacity of POM is periodically restored by oxidation with O2 during peat oxygenation events. We employed push-pull tests with dissolved O2 as reactant to determine pseudo-first-order rate constants of O2 consumption ( kobs) in anoxic peat soil of an unperturbed Swedish ombrotrophic bog. Dissolved O2 was rapidly consumed in anoxic peat with a mean kobs of 2.91 ± 0.60 h-1, corresponding to an O2 half-life of ∼14 min. POM dominated O2 consumption, as evidenced from approximately 50-fold smaller kobs in POM-free control tests. Inhibiting microbial activity with formaldehyde did not appreciably slow O2 consumption, supporting abiotic O2 reduction by POM moieties, not aerobic respiration, as the primary route of O2 consumption. Peat preoxygenation with dissolved O2 lowered kobs in subsequent oxygen consumption tests, consistent with depletion of reduced moieties in POM. Finally, repeated oxygen consumption tests demonstrated that anoxic peat POM has a high reduction capacity, in excess to 20 µmol electrons donated per gram POM. This work demonstrates rapid abiotic oxidation of reduced POM by O2, supporting that short-term oxygenation events can restore the capacity of POM to accept electrons from anaerobic respiration in temporarily anoxic parts of peatlands.

High Temporal and Spatial Variability of Atmospheric-Methane Oxidation in Alpine Glacier Forefield Soils.

Glacier forefield soils can provide a substantial sink for atmospheric CH4, facilitated by aerobic methane-oxidizing bacteria (MOB). However, MOB activity, abundance, and community structure may be affected by soil age, MOB location in different forefield landforms, and temporal fluctuations in soil physical parameters. We assessed the spatial and temporal variability of atmospheric-CH4 oxidation in an Alpine glacier forefield during the snow-free season of 2013. We quantified CH4 flux in soils of increasing age and in different landforms (sandhill, terrace, and floodplain forms) by using soil gas profile and static flux chamber methods. To determine MOB abundance and community structure, we employed pmoA gene-based quantitative PCR and targeted amplicon sequencing. Uptake of CH4 increased in magnitude and decreased in variability with increasing soil age. Sandhill soils exhibited CH4 uptake rates ranging from -3.7 to -0.03 mg CH4 m-2 day-1 Floodplain and terrace soils exhibited lower uptake rates and even intermittent CH4 emissions. Linear mixed-effects models indicated that soil age and landform were the dominating factors shaping CH4 flux, followed by cumulative rainfall (weighted sum ≤4 days prior to sampling). Of 31 MOB operational taxonomic units retrieved, ∼30% were potentially novel, and ∼50% were affiliated with upland soil clusters gamma and alpha. The MOB community structures in floodplain and terrace soils were nearly identical but differed significantly from the highly variable sandhill soil communities. We concluded that soil age and landform modulate the soil CH4 sink strength in glacier forefields and that recent rainfall affects its short-term variability. This should be taken into account when including this environment in future CH4 inventories.IMPORTANCE Oxidation of methane (CH4) in well-drained, "upland" soils is an important mechanism for the removal of this potent greenhouse gas from the atmosphere. It is largely mediated by aerobic, methane-oxidizing bacteria (MOB). Whereas there is abundant information on atmospheric-CH4 oxidation in mature upland soils, little is known about this important function in young, developing soils, such as those found in glacier forefields, where new sediments are continuously exposed to the atmosphere as a result of glacial retreat. In this field-based study, we investigated the spatial and temporal variability of atmospheric-CH4 oxidation and associated MOB communities in Alpine glacier forefield soils, aiming at better understanding the factors that shape the sink for atmospheric CH4 in this young soil ecosystem. This study contributes to the knowledge on the dynamics of atmospheric-CH4 oxidation in developing upland soils and represents a further step toward the inclusion of Alpine glacier forefield soils in global CH4 inventories.

How functional is a trait? Phosphorus mobilization through root exudates differs little between Carex species with and without specialized dauciform roots.

Root structures secreting carboxylates and phosphatases are thought to enhance a plant's phosphorus (P) acquisition. But do closely related species with and without such structures really differ in root exudation, P mobilization, or ecological niche? We investigated this by comparing 23 European Carex species with and without 'dauciform roots' (DRs). Plants grown in pots with sand were screened for DR formation, phosphatase activities, carboxylate exudation, and utilization of various organic and inorganic P compounds. Ecological niches were compared using ecological indicator values and nutrient concentrations of plant shoots in natural habitats. Species of subgenus Carex formed DRs, while species of subgenus Vignea did not. Species with DRs had higher root diesterase activity than species without DRs, exuded more citrate but less oxalate and less total carboxylates, and allocated less biomass to roots. Species with and without DRs showed similar growth responses to different forms of P and different amounts of P supplied; their natural habitats do not differ in soil fertility or degree of P limitation. Despite some differences in physiological function, DRs did not influence the P acquisition and nutritional niche of European Carex species, suggesting that species with and without DRs do not exhibit distinct P-acquisition strategies.

Quantification of Phenolic Antioxidant Moieties in Dissolved Organic Matter by Flow-Injection Analysis with Electrochemical Detection.

Phenolic moieties in dissolved organic matter (DOM) play important roles as antioxidants in oxidation processes in natural and engineered systems. This work presents an automated and highly sensitive flow injection analysis (FIA) system coupled to both spectrophotometric and electrochemical detection to quantify electron-donating phenolic moieties in DOM by determining the number of electrons that these moieties transfer to an added chemical oxidant, the radical cation of 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS(•+)). The FIA system was successfully validated using Trolox as a redox standard. Highest method sensitivity was attained when combining the FIA with chronoamperometric detection, resulting in limits of quantification of picomolar amounts of Trolox and nanogram amounts of DOM (corresponding to solutions with <1 mg carbon per liter). The analysis of DOM isolates showed a strong linear correlation between the number of electrons donated and their titrated phenol contents, supporting oxidation of phenols by ABTS(•+). The broad application spectrum of the FIA system to dilute natural DOM samples was illustrated by analyzing water samples collected from northern peatlands and by monitoring the oxidation of phenols in one peat sample upon incubation with a phenol oxidase. The superior analytical capability of the FIA system allows quantifying phenols and monitoring phenol dynamics in dilute DOM samples.

Field-scale tracking of active methane-oxidizing communities in a landfill cover soil reveals spatial and seasonal variability.

Aerobic methane-oxidizing bacteria (MOB) in soils mitigate methane (CH4 ) emissions. We assessed spatial and seasonal differences in active MOB communities in a landfill cover soil characterized by highly variable environmental conditions. Field-based measurements of CH4 oxidation activity and stable-isotope probing of polar lipid-derived fatty acids (PLFA-SIP) were complemented by microarray analysis of pmoA genes and transcripts, linking diversity and function at the field scale. In situ CH4 oxidation rates varied between sites and were generally one order of magnitude lower in winter compared with summer. Results from PLFA-SIP and pmoA transcripts were largely congruent, revealing distinct spatial and seasonal clustering. Overall, active MOB communities were highly diverse. Type Ia MOB, specifically Methylomonas and Methylobacter, were key drivers for CH4 oxidation, particularly at a high-activity site. Type II MOB were mainly active at a site showing substantial fluctuations in CH4 loading and soil moisture content. Notably, Upland Soil Cluster-gamma-related pmoA transcripts were also detected, indicating concurrent oxidation of atmospheric CH4 . Spatial separation was less distinct in winter, with Methylobacter and uncultured MOB mediating CH4 oxidation. We propose that high diversity of active MOB communities in this soil is promoted by high variability in environmental conditions, facilitating substantial removal of CH4 generated in the waste body.

Physical extraction of microorganisms from water-saturated, packed sediment.

Microbial characterization of aquifers should include samples of both suspended and attached microorganisms (biofilms). We investigated the effect of shear, sonication, and heat on the extraction of microorganisms from water-saturated, packed sediment columns containing established biofilms. Shear was studied by increasing flow velocity of the column eluent, sonication by treating the columns with ultrasound at different power levels, and heat by warming up the column eluent to different temperatures. Effluent cell concentrations were used as a measure of extraction efficiency. Dissolved organic carbon and adenosine tri-phosphate (ATP) concentrations were used to corroborate cell-extraction results. Additionally, ATP was used as an indicator of cell-membrane integrity. Extraction quality was determined by comparing terminal-restriction fragment length polymorphism (T-RFLP) profiles of extracted bacterial communities with destructively sampled sediment-community profiles. Sonication and heat increased the extraction efficiency up to 200-fold and yielded communities comparable to the sediment community. These treatments showed high potential for in-situ application in aquifers.

Poly-use multi-level sampling system for soil-gas transport analysis in the vadose zone.

Soil-gas turnover is important in the global cycling of greenhouse gases. The analysis of soil-gas profiles provides quantitative information on below-ground turnover and fluxes. We developed a poly-use multi-level sampling system (PMLS) for soil-gas sampling, water-content and temperature measurement with high depth resolution and minimal soil disturbance. It is based on perforated access tubes (ATs) permanently installed in the soil. A multi-level sampler allows extraction of soil-gas samples from 20 locations within 1 m depth, while a capacitance probe is used to measure volumetric water contents. During idle times, the ATs are sealed and can be equipped with temperature sensors. Proof-of-concept experiments in a field lysimeter showed good agreement of soil-gas samples and water-content measurements compared with conventional techniques, while a successfully performed gas-tracer test demonstrated the feasibility of the PMLS to determine soil-gas diffusion coefficients in situ. A field application of the PMLS to quantify oxidation of atmospheric CH4 in a field lysimeter and in the forefield of a receding glacier yielded activity coefficients and soil-atmosphere fluxes well in agreement with previous studies. With numerous options for customization, the presented tool extends the methodological choices to investigate soil-gas transport in the vadose zone.

Degradation of polar organic micropollutants during riverbank filtration: complementary results from spatiotemporal sampling and push-pull tests.

The fate of polar organic micropollutants (logDOW (pH 7) between -4.2 and +3.5) during riverbank filtration (RBF) at the river Thur was studied using both spatiotemporally resolved sampling and single-well push-pull tests (PPT), followed by LC-MS/MS analysis. The Thur is a dynamic prealpine river with an alluvial sandy-gravel aquifer, which is characterized by short groundwater travel times (a few days) from surface water infiltration to groundwater extraction. The spatiotemporal sampling allowed tracing concentration dynamics in the river and the groundwater and revealed persistence for the drug carbamazepine, while the herbicide MCPA (2-methyl-4-chloro-phenoxyacetic acid) and the drug 4-acetamidoantipyrine were very quickly degraded under the prevalent aerobic conditions. The corrosion inhibitor 1H-benzotriazole was degraded slightly, particularly in a transect influenced by river restoration measures. For the first time in situ first-order degradation rate constants for three pesticides and two pharmaceuticals were determined by PPTs, which confirmed the results of the spatiotemporal sampling. Atenolol was transformed almost completely to atenolol acid. Rate constants of 0.1-1.3 h(-1) for MCPA, 2,4-D, mecoprop, atenolol, and diclofenac, corresponding to half-lives of 0.6-6.3 h, demonstrated the great potential of RBF systems to degrade organic micropollutants and simultaneously the applicability of PPTs for micropollutants in such dynamic systems.

Chemical extraction of microorganisms from water-saturated, packed sediment.

Microbial characterization of aquifers should combine collection of suspended and attached microorganisms (biofilms). This study investigated chemical extraction of microorganisms from water-saturated, packed sediment containing established biofilms. It compares the use of different detachment-promoting agent (DPA) solutions with tap water as eluent in column experiments. Extraction efficiency was determined from cell concentrations in the column effluent. Adenosine triphosphate concentrations were measured to confirm cell extraction and as an indicator of cell membrane integrity. Quality of extracted bacterial communities was assessed by comparing their terminal restriction fragment length polymorphism profiles with destructively sampled sediment-community profiles. Extraction efficiency increased more than 8-fold when deionized water, D-amino acids, or enzymes were used as a DPA. Community profiles recovered by individual DPA solutions showed more pronounced differences at the level of rare microbial groups, whereas abundant groups appeared ubiquitous across treatments. These results suggest that comparison of communities extracted by different DPAs can provide improved information on the occurrence of rare microbial groups in biofilms.

Development and evaluation of micro push-pull tests to investigate micro-scale processes in porous media.

Soils and sediments are porous media characterized by heterogeneities across a wide range of spatial scales. Physical, chemical, and biological properties have been found to show great variation even at subcentimeter scales. Here we present a new micro technique for the in situ study of chemical and microbiological reactions in water-saturated porous media at the mm-scale. This technique combines micro suction cups with the principle of single-well injection-withdrawal tests ("push-pull" tests). Push-pull tests have been used extensively on larger scales in groundwater research to obtain quantitative information of physical, chemical, and microbiological characteristics of an aquifer. The micro push-pull technique presented here was developed and validated using a thin-slab chamber filled with sand. A porous micro cup was used to inject about 250 µL of a test solution into the water-saturated sand pack and then to slowly extract about 850 µL water from the same point. The extraction-phase breakthrough curves of the solutes were modeled considering advection, dispersion, and molecular diffusion without fitting any parameters. As an example we quantified the degradation of citrate injected into the water-saturated sand pack inoculated with denitrifying bacteria. The results show that the new technique can be used to assess local microbial degradation processes under in situ conditions on the micro scale.

Effect of water-table fluctuation on dissolution and biodegradation of a multi-component, light nonaqueous-phase liquid.

Light nonaqueous-phase liquids (LNAPLs) such as gasoline and diesel fuel are among the most common causes of soil and groundwater contamination. Dissolution and subsequent advective transport of LNAPL components can negatively impact water supplies, while biodegradation is thought to be an important sink for this class of contaminants. We present a laboratory investigation of the effect of a water-table fluctuation on dissolution and biodegradation of a multi-component LNAPL (85% hexadecane, 5% toluene, 5% ethylbenzene, and 5% 2-methylnapthalene on a molar basis) in a pair of similar model aquifers (80 cm x 50 cm x 3 cm), one of which was subjected to a water-table fluctuation. Water-table fluctuation resulted in LNAPL and air entrapment below the water table, an increase in the vertical extent of the LNAPL source zone (by factor 6.7), and an increase in the volume of water passing through the source zone (by factor ~18). Effluent concentrations of dissolved LNAPL components were substantially higher and those of dissolved nitrate lower in the model aquifer where a fluctuation had been induced. Thus, water-table fluctuation led to enhanced biodegradation activity (28.3 mmol of nitrate consumed compared to 16.3 mmol in the model without fluctuation) as well as enhanced dissolution of LNAPL components. Despite the increased biodegradation, fluctuation led to increased elution of dissolved LNAPL components from the system (by factors 10-20). Hence, water-table fluctuations in LNAPL-contaminated aquifers might be expected to result in increased exposure of downgradient receptors to LNAPL components. Accordingly, water-table fluctuations in contaminated aquifers are probably undesirable unless the LNAPL is of minimal solubility or the dissolved-phase plume is not expected to reach a receptor due to distance or the presence of some form of containment.

Methanotrophic activity in a diffusive methane/oxygen counter-gradient in an unsaturated porous medium.

Microbial methane (CH4) oxidation is a main control on emissions of this important greenhouse gas from ecosystems such as contaminated aquifers or wetlands under aerobic onditions. Due to a lack of suitable model systems, we designed a laboratory column to study this process in diffusional CH4/O2 counter-gradients in unsaturated porous media. Analysis and simulations of the steady-state CH4, CO2 and O2 gas profiles showed that in a 15-cm-deep active zone, CH4 oxidation followed first-order kinetics with respect to CH4 with a high apparent first-order rate constant of approximately 30 h(-1). Total cell counts obtained using DAPI-staining suggested growth of methanotrophic bacteria, resulting in a high capacity for CH4 oxidation. This together with apparent tolerance to anoxic conditions enabled a rapid response of the methanotrophic community to changing substrate availability, which was induced by changes in O2 concentrations at the top of the column. Microbial oxidation was confirmed by a approximately 7 per thousand enrichment in CH4 stable carbon isotope ratios along profiles. Using a fractionation factor of 1.025+/-0.0005 for microbial oxidation estimated from this shift and the fractionation factor for diffusion, simulations of isotope profiles agreed well with measured data confirming large fractionation associated with microbial oxidation. The designed column should be valuable for investigating response of methanotrophic bacteria to environmental parameters in future studies.

Models to determine first-order rate coefficients from single-well push-pull tests.

Push-pull tests (PPTs) have been successfully employed to quantify various microbially mediated processes in the subsurface. Current models for determining first-order rate coefficients (k) from PPTs assume complete and instantaneous mixing of injected test solution in the portion of the aquifer investigated by the test, i.e., the system is treated like a well-mixed reactor. Here we present two alternative models to estimate k that are based on different mixing assumptions, i.e., plug-flow and variably mixed reactor models. Rate coefficients estimated by the models were compared using a sensitivity analysis and numerical simulations of PPTs. Results indicated that all models yielded reasonably accurate k estimates (errors < 13%), while best accuracy (errors < 1%) was obtained using the variably mixed reactor model. The well-mixed reactor model generally overestimated true (simulation input) k values, whereas true k values were consistently underestimated by the plug-flow reactor model. However, estimates of k obtained with the latter models bracketed true k values in all cases. As the variably mixed reactor model is more difficult to apply, we suggest using the well-mixed and plug-flow reactor models to obtain intervals for k estimates that will encompass true k values with high certainty. In an example application, we used all models to reanalyze a published PPT data set to obtain k estimates for nitrate consumption in a petroleum-contaminated aquifer. Similar results were obtained for all three models (relative differences < 10% between k estimates), indicating that all three models are robust tools for estimating k values from PPT experimental data.

Field-scale isotopic labeling of phospholipid fatty acids from acetate-degrading sulfate-reducing bacteria.

Isotopic labeling of biomarker molecules is a technique applied to link microbial community structure with activity. Previously, we successfully labeled phospholipid fatty acids (PLFA) of suspended nitrate-reducing bacteria in an aquifer. However, the application of the method to low energy-yielding processes such as sulfate reduction, and extension of the analysis to attached communities remained to be studied. To test the feasibility of the latter application, an anoxic test solution of 500 l of groundwater with addition of 0.5 mM Br- as a conservative tracer, 1.1 mM SO4(2-), and 2.0 mM [2-13C]acetate was injected in the transition zone of a petroleum hydrocarbon-contaminated aquifer where sulfate-reducing and methanogenic conditions prevailed. Thousand liters of test solution/groundwater mixture were extracted in a stepwise fashion after 2-46 h incubation. Computed apparent first-order rate coefficients were 0.31+/-0.04 day(-1) for acetate and 0.34+/-0.05 day(-1) for SO4(2-) consumption. The delta13C increased from -71.03 per thousand to +3352.50 per thousand in CH4 and from -16.15 per thousand to +32.13 per thousand in dissolved inorganic carbon (DIC). A mass balance suggested that 43% of the acetate-derived (13)C appeared in DIC and 57% appeared in CH4. Thus, acetate oxidation coupled to sulfate reduction and acetoclastic methanogenesis occurred simultaneously. The delta13C of PLFA increased on average by 27 per thousand in groundwater samples and 4 per thousand in sediment samples. Hence, both suspended and attached communities actively degraded acetate. The PLFA labeling patterns and fluorescent in situ hybridization (FISH) analyses of sediment and groundwater samples suggested that the main sulfate-reducing bacteria degrading the acetate were Desulfotomaculum acetoxidans and Desulfobacter sp. in groundwater, and D. acetoxidans in sediment.

Approximate solution for solute transport during spherical-flow push-pull tests.

An approximate analytical solution to the advection-dispersion equation was derived to describe solute transport during spherical-flow conditions in single-well push-pull tests. The spherical-flow case may be applicable to aquifer tests conducted in packed intervals or partially penetrating wells. Using results of two-dimensional numerical simulations, we briefly illustrate the applicability of the derived spherical-flow solution and provide a comparison with its cylindrical-flow counterpart. Good agreement between simulated extraction-phase breakthrough curves and the spherical-flow solution was found when the length of the injection/extraction region was small compared to both aquifer thickness and maximum solute frontal position at the end of the injection phase. On the other hand, discrepancies between simulated breakthrough curves and the spherical-flow solution increased with increasing anisotropy in hydraulic conductivities. Several inherent limitations embedded in its derivation such as assumptions of isotropy and homogeneity warrant the cautious use of the spherical-flow solution.

Methods to assess the amenability of petroleum hydrocarbons to bioremediation.

Bioremediation has achieved acceptance as a cost-effective technique for the remediation of soils and groundwater contaminated with petroleum hydrocarbons (PHC). A range of laboratory techniques to assess the biodegradability and bioavailability of PHCs are presented. Biodegradability and bioavailability are important determinants of the bioremediation performance of PHCs. Novel methods for the assessment of the bioavailability of PHC components are described. The techniques are demonstrated for a hydraulic fluid and a spindle oil from a contaminated site. Biodegradation is measured by oxygen consumption and carbon dioxide production. Bioavailability of the PHCs is estimated based on the PHC-water partitioning of tracer compounds and a novel analysis of gas chromatograms based on Raoult's law. The PHCs tested were only partially biodegradable (< 25% in 78 d) due to the low solubility and likely recalcitrance of some of their components. The combination of techniques outlined is expected to be of use in assessing the likely bioremediation performance of PHCs for which published data are scarce or inadequate.

Interaction between water flow and spatial distribution of microbial growth in a two-dimensional flow field in saturated porous media.

Bacterial growth and its interaction with water flow was investigated in a two-dimensional flow field in a saturated porous medium. A flow cell (56 x 44 x 1 cm) was filled with glass beads and operated under a continuous flow of a mineral medium containing nitrate as electron acceptor. A glucose solution was injected through an injection port, simulating a point source contamination. Visible light transmission was used to observe the distribution of the growing biomass and water flow during the experiment. At the end of the experiment (on day 31), porous medium samples were destructively collected and analyzed for abundance of total and active bacterial cells, bacterial cell volume and concentration of polysaccharides and proteins. Microbial growth was observed in two stripes along the length of the flow cell, starting at the glucose injection port, where highest biomass concentrations were obtained. The spatial distribution of biomass indicated that microbial activity was limited by transverse mixing between glucose and nitrate media, as only in the mixing zone between the media high biological activities were achieved. The ability of the biomass to change the flow pattern in the flow cell was observed, indicating that the biomass was locally reducing the hydraulic conductivity of the porous medium. This bioclogging effect became evident when the injection of the glucose solution was turned off and water flow still bypassed the area around the glucose injection port, preserving the flow pattern as it was during the injection of the glucose solution. As flow bypass was possible in this system, the average hydraulic properties of the flow cell were not affected by the produced biomass. Even in the vicinity of the injection port, the total volume of the bacterial cells remained below 0.01% of the pore space and was unlikely to be responsible for the bioclogging. However, the bacteria produced large amounts of extracellular polymeric substances (EPS), which likely caused the observed bioclogging effects.

Modeling of a microbial growth experiment with bioclogging in a two-dimensional saturated porous media flow field.

A model was developed simulating reactive transport in groundwater including bioclogging. Results from a bioclogging experiment in a flow cell with a two-dimensional flow field were used as a data base to verify the simulation results of the model. Simulations were performed using three different hydraulic conductivity vs. porosity relations published in literature; two relations derived from pore network simulations assuming the biomass to grow in discrete colonies and as a biofilm, respectively, and a third relation, which did not include pore connectivity in more than one dimension. Best agreement with the experimental data was achieved using a hydraulic conductivity vs. porosity relation derived from pore network simulation assuming the biomass to grow in colonies. The relation derived from pore network simulations assuming biomass to grow as a biofilm was unable to reproduce the experimental data when realistic parameter values were employed. With the third relation the clogging ability of the biomass was strongly underestimated. These findings indicate that the porous medium needs to be treated as a multi-dimensional medium already on the pore scale, and that biomass growth different than in a biofilm must be considered to get an appropriate description of bioclogging.

In-situ sonication for enhanced recovery of aquifer microbial communities.

Sampling methods for characterization of microbial communities in aquifers should target both suspended and attached microorganisms (biofilms). We investigated the effectiveness and reproducibility of low-frequency (200 Hz) sonication pulses on improving extraction efficiency and quality of microorganisms from a petroleum-contaminated aquifer in Studen (Switzerland). Sonication pulses at different power levels (0.65, 0.9, and 1.1 kW) were applied to three different groundwater monitoring wells. Groundwater samples extracted after each pulse were compared with background groundwater samples for cell and adenosine tri-phosphate concentration. Turbidity values were obtained to assess the release of sediment fines and associated microorganisms. The bacterial community in extracted groundwater samples was analyzed by terminal-restriction-fragment-length polymorphism and compared with communities obtained from background groundwater samples and from sediment cores. Sonication enhanced the extraction efficiency up to 13-fold, with most of the biomass being associated with the sediment fines extracted with groundwater. Consecutive pulses at constant power were decreasingly effective, while pulses with higher power yielded the best results both in terms of extraction efficiency and quality. Our results indicate that low-frequency sonication may be a viable and cost-effective tool to improve the extraction of microorganisms from aquifers, taking advantage of existing groundwater monitoring wells.