Analysis of an all-solid state nanobattery using molecular dynamics simulations under an external electric field.

Present Li-ion battery (LIB) technology requires strong improvements in performance, energy capacity, charging-time, and cost to expand their application to e-mobility and grid storage. Li-metal is one of the most promising materials to replace commercial anodes such as graphite because of its 10 times higher specific capacity. However, Li-metal has high reactivity with commercial liquid electrolytes; thus, new solid materials are proposed to replace liquid electrolytes when Li-metal anodes are used. We present a theoretical analysis of the charging process in a full nanobattery, containing a LiCoO2 cathode, a Li7P2S8I solid-state electrolyte (SSE), a Li-metal anode as well as Al and Cu collectors for the cathode and anode, respectively. In addition, we added a Li3P/Li2S film as a solid electrolyte interphase (SEI) layer between the Li-anode and SSE. Thus, we focus this study on the SEI and SSE. We simulated the charging of the nanobattery with an external voltage by applying an electric field. We estimated temperature profiles within the nanobattery and analyzed Li-ion transport through the SSE and SEI. We observed a slight temperature rise at the SEI due to reactions forming PS3- and P2S74- fragments at the interfaces; however, this temperature profile changes due to the charging current under the presence of the external electric field ε = 0.75 V Å-1. Without the external field, the calculated open-circuit voltage (OCV) was 3.86 V for the battery, which is within the range of values of commercial cobalt-based LIBs. This voltage implies a spontaneous fall of available Li-ions from the anode to the cathode (during discharge). The charge of this nanobattery requires overcoming the OCV plus an additional voltage that determines the charging current. Thus, we applied an external potential able to neutralize the OCV, plus an additional 1.6 V to induce the transport of Li+ from the cathode up to the anode. Several interesting details about Li+ transport paths through the SSE and SEI are discussed.

Highly Reversible Aqueous Zinc Batteries enabled by Zincophilic-Zincophobic Interfacial Layers and Interrupted Hydrogen-Bond Electrolytes.

Aqueous Zn batteries promise high energy density but suffer from Zn dendritic growth and poor low-temperature performance. Here, we overcome both challenges by using an eutectic 7.6 m ZnCl2 aqueous electrolyte with 0.05 m SnCl2 additive, which in situ forms a zincophilic/zincophobic Sn/Zn5 (OH)8 Cl2 ⋅H2 O bilayer interphase and enables low temperature operation. Zincophilic Sn decreases Zn plating/stripping overpotential and promotes uniform Zn plating, while zincophobic Zn5 (OH)8 Cl2 ⋅H2 O top-layer suppresses Zn dendrite growth. The eutectic electrolyte has a high ionic conductivity of ≈0.8 mS cm-1 even at -70 °C due to the distortion of hydrogen bond network by solvated Zn2+ and Cl- . The eutectic electrolyte enables Zn∥Ti half-cell a high Coulombic efficiency (CE) of >99.7 % for 200 cycles and Zn∥Zn cell steady charge/discharge for 500 h with a low overpotential of 8 mV at 3 mA cm-2 . Practically, Zn∥VOPO4 batteries maintain >95 % capacity with a CE of >99.9 % for 200 cycles at -50 °C, and retain ≈30 % capacity at -70 °C of that at 20 °C.

CO2 Capture and Separations Using MOFs: Computational and Experimental Studies.

This Review focuses on research oriented toward elucidation of the various aspects that determine adsorption of CO2 in metal-organic frameworks and its separation from gas mixtures found in industrial processes. It includes theoretical, experimental, and combined approaches able to characterize the materials, investigate the adsorption/desorption/reaction properties of the adsorbates inside such environments, screen and design new materials, and analyze additional factors such as material regenerability, stability, effects of impurities, and cost among several factors that influence the effectiveness of the separations. CO2 adsorption, separations, and membranes are reviewed followed by an analysis of the effects of stability, impurities, and process operation conditions on practical applications.

Solvation of actinide salts in water using a polarizable continuum model.

In order to determine how actinide atoms are dressed when solvated in water, density functional theory calculations have been carried out to study the equilibrium structure of uranium plutonium and thorium salts (UO2(2+), PuO2(2+), Pu(4+), and Th(4+)) both in vacuum as well as in solution represented by a conductor-like polarizable continuum model. This information is of paramount importance for the development of sensitive nanosensors. Both UO2(2+) and PuO2(2+) ions show coordination number of 4-5 with counterions replacing one or two water molecules from the first coordination shell. On the other hand, Pu(4+), has a coordination number of 8 both when completely solvated and also in the presence of chloride and nitrate ions with counterions replacing water molecules in the first shell. Nitrates were found to bind more strongly to Pu(IV) than chloride anions. In the case of the Th(IV) ion, the coordination number was found to be 9 or 10 in the presence of chlorides. Moreover, the Pu(IV) ion shows greater affinity for chlorides than the Th(IV) ion. Adding dispersion and ZPE corrections to the binding energy does not alter the trends in relative stability of several conformers because of error cancelations. All structures and energetics of these complexes are reported.

Creating covalent bonds between Cu and C at the interface of metal/open-ended carbon nanotubes.

The unique electrical properties of carbon nanotubes (CNTs) are highly desired in many technological applications. Unfortunately, in practice, the electrical conductivity of most CNTs and their assemblies has fallen short of expectations. One reason for this poor performance is that electrical resistance develops at the interface between carbon nanomaterials and metal surfaces when traditional metal-metal type contacts are employed. Here, a method for overcoming this resistance using covalent bond formation between open-ended CNTs and Cu surfaces is investigated experimentally and supported by theoretical calculations. The open-ended CNTs are vertically oriented compared to the substrate and have carboxylic functional groups that react with aminophenyl groups (linkers) grafted on metal surfaces. The covalent bond formation, crosslinking carboxylic and amine, via amide bond formation occurs at 120 °C. The covalent bonding nature of the aminophenyl linker is demonstrated theoretically using (100), (110), and (111) Cu surfaces, and bridge-like bond formation between carbon and two adjacent Cu atoms is revealed. The electrical conductivity calculated for a single intramolecular-type junction supports covalent bond formation between Cu and CNTs. Experimentally, the robustness of the covalent bonding between vertically oriented CNTs is tested by exposing CNTs on Cu to sonication, which reveals that CNTs remain fixed to the Cu supports. Since bonding CNTs to metals was performed at low temperatures, the reported method of covalent bond formation is expected to facilitate the application of CNTs in multiple fields, including electronics.

Molecular jackhammers eradicate cancer cells by vibronic-driven action.

Through the actuation of vibronic modes in cell-membrane-associated aminocyanines, using near-infrared light, a distinct type of molecular mechanical action can be exploited to rapidly kill cells by necrosis. Vibronic-driven action (VDA) is distinct from both photodynamic therapy and photothermal therapy as its mechanical effect on the cell membrane is not abrogated by inhibitors of reactive oxygen species and it does not induce thermal killing. Subpicosecond concerted whole-molecule vibrations of VDA-induced mechanical disruption can be achieved using very low concentrations (500 nM) of aminocyanines or low doses of light (12 J cm-2, 80 mW cm-2 for 2.5 min), resulting in complete eradication of human melanoma cells in vitro. Also, 50% tumour-free efficacy in mouse models for melanoma was achieved. The molecules that destroy cell membranes through VDA have been termed molecular jackhammers because they undergo concerted whole-molecule vibrations. Given that a cell is unlikely to develop resistance to such molecular mechanical forces, molecular jackhammers present an alternative modality for inducing cancer cell death.

Direct in situ measurements of electrical properties of solid-electrolyte interphase on lithium metal anodes.

The solid-electrolyte interphase (SEI) critically governs the performance of rechargeable batteries. An ideal SEI is expected to be electrically insulative to prevent persistently parasitic reactions between the electrode and the electrolyte and ionically conductive to facilitate Faradaic reactions of the electrode. However, the true nature of the electrical properties of the SEI remains hitherto unclear due to the lack of a direct characterization method. Here we use in situ bias transmission electron microscopy to directly measure the electrical properties of SEIs formed on copper and lithium substrates. We reveal that SEIs show a voltage-dependent differential conductance. A higher rate of differential conductance induces a thicker SEI with an intricate topographic feature, leading to an inferior Coulombic efficiency and cycling stability in Li∣∣Cu and Li∣∣LiNi0.8Mn0.1Co0.1O2 cells. Our work provides insight into the targeted design of the SEI with desired characteristics towards better battery performance.

Fullerene binding effects in Al(III)/Zn(II) Porphyrin/Phthalocyanine photophysical properties and charge transport.

We evaluate the fullerene C60 binding effect; through the metal (Al) and through the ligand (Pc,TPP), on the photophysical and charge transport properties of M-porphyrin(TPP)/phthalocyanine(Pc) (M = Al(III), Zn(II)). We perform density functional theory (DFT) and time-dependent DFT calculations for the macrocycle-C60 dyads, showing that all systems studied are thermodynamically favorable. The C60 binding effect on the absorption spectrum is a red-shift of the Q and Soret (B) bands of TPPs and Pcs. The Pc-dyads show longer λ for Q bands (673 nm) than those with TPP (568 nm). AlTPP-C60 and ZnTPP-C60 show a more favorable electron injection to TiO2 than the analogs Pcs, and the regeneration of the dye is preferred in AlTPP-C60 and AlPc-C60. Zero-bias conductance is computed (10-4-10-7 G0) for the dyads using molecular junctions with Au(111)-based electrodes. When a bias voltage of around 0.6 V up to 1 V is applied, an increase in current is obtained for AlTPP-C60 (10-7 A), ZnTPP-C60 (10-7 A), and AlPc-C60 (10-8 A). Although there is not a unique trend in the behavior of the dyads, Pcs have better photophysical properties than TPPs and the latter are better in the charge transport. We conclude that AlTPP(ZnTPP)-C60 dyads are an excellent alternative for designing new materials for dye-sensitized solar cells or optoelectronic devices.

Polypeptides in alpha-helix conformation perform as diodes.

Molecules that resemble a semiconductor diode depletion zone are those with an intrinsic electric dipole, which were suggested as potential electronic devices. However, so far, no single molecule has met such a goal because any electron donor-acceptor linker strongly diminishes any possibility of diode behavior. We find an intrinsic diode behavior in polypeptides such as poly(L-alanine) and polyglycine in alpha-helix conformation, explained in terms of molecular orbital theory using ab initio methods. The application of an antiparallel electric field with respect to the molecular dipole yields a gradual increase in current through the junction because the valence and conduction orbitals approach each other reducing their gap as the bias increases. However, a parallel field makes the gap energy increase, avoiding the pass of the electrons.

Vibronics and plasmonics based graphene sensors.

A high sensitivity and selectivity sensor is proposed using graphene ribbons which are able to read molecular vibrations and molecular electrostatic potentials, acting as an amplifier and as a transducer converting molecular signals into current-voltage quantities of standard electronics. Two sensing mechanisms are used to demonstrate the concept using ab initio density functional methods. By using the terahertz region of the spectrum, we can characterize modes when single molecules are adsorbed on the ribbon surface. Characteristic modes can be obtained and used as fingerprints, which can be transduced into current by applying a voltage along the ribbons. On the other hand, the fully delocalized frontier molecular orbitals of graphene ribbons, commonly denominated plasmons in larger solid state structures, are extremely sensitive to any moiety approach; once plasmons are in contact with an "agent" (actually its molecular potential), the transport through the ribbons acting as electrodes catching the signals is strongly affected.

Solid electrolyte interphase formation between the Li0.29La0.57TiO3 solid-state electrolyte and a Li-metal anode: an ab initio molecular dynamics study.

An ab initio molecular dynamics study of an electrochemical interface between a solid-state-electrolyte Li0.29La0.57TiO3 and Li-metal is performed to analyze interphase formation and evolution when external electric fields of 0, 0.5, 1.0 and 2.0 V Å-1 are applied. From this electrochemical stability analysis, it was concluded that lithium-oxide (Li2O) and lanthanum-oxide (La2O3) phases were formed at the electrolyte/anode interphase. As the electric field increased, oxygen from the electrolyte diffused through the Li-metal anode, increasing the amount of O from deeper crystallographic planes of the electrolyte that reacted with Li and La. A strong reduction of Ti was expected from their Bader charge variation from +3.5 in the bulk to +2.5 at the interface. Due to the loss of Li atoms from the anode to form Li-oxide at the interphase, vacancies were created on the Li-metal, causing anode structure amorphization near the Li-oxide phase and keeping the rest of the anode structure as BCC. Therefore, the interface was unstable because of the continuous Li-oxide and La-oxide formation and growth, which were more pronounced when increasing the external electric field.

Switchable molecular conductivity.

We demonstrate the switchability of the molecular conductivity of a citrate. This was made possible through mechanical stretching of two conformers of such citrate capped on and linked between gold nanoparticles (AuNPs) self-assembled as a film. On the basis of experimental results, theoretical analysis was conducted using the density function theory and Green's function to study the electron flux in the backbone. We found that the molecular conductivity depended on the pathways of electrons that were controlled by the applied mechanical stress. Under stress, we could tune the conductivity up and down for as much as 10-fold. The mechanochemistry behind this phenomenon is an alternative branch of chemistry.

Transverse electronic transport in double-stranded DNA nucleotides.

We calculate the transverse current through double-stranded DNA nucleotides using ab initio techniques in order to establish a protocol to recognize the type and sequence of double-stranded DNA nucleotides. The distinct current-voltage features between nucleotides are used as signatures for their characterization and sequencing. Extended bulk gold electrodes as well as extensions of the DNA backbones are tested as contacts for the electron transport, yielding currents 2 orders of magnitude larger for the former. The addition of Na or H positive counterions improves the signal levels, thus leading to a better discrimination, especially when sodium cations are added.

Current-voltage-temperature characteristics of DNA origami.

The temperature dependences of the current-voltage characteristics of a sample of triangular DNA origami deposited in a 100 nm gap between platinum electrodes are measured using a probe station. Below 240 K, the sample shows high impedance, similar to that of the substrate. Near room temperature the current shows exponential behavior with respect to the inverse of temperature. Sweep times of 1 s do not yield a steady state; however sweep times of 450 s for the bias voltage secure a steady state. The thermionic emission and hopping conduction models yield similar barriers of approximately 0.7 eV at low voltages. For high voltages, the hopping conduction mechanism yields a barrier of 0.9 eV and the thermionic emission yields 1.1 eV. The experimental data set suggests that the dominant conduction mechanism is hopping in the range 280-320 K. The results are consistent with theoretical and experimental estimates of the barrier for related molecules.

Light-activated molecular conductivity in the photoreactions of vitamin D3.

In this theoretical-experimental approach, we show using ab initio calculations behavior consistent with the activation of 7-dehydrocholesterol, provitamin D(3), as an initial reactant toward ultraviolet-activated reactions of vitamin D(3). We find using molecular orbital theory that a conformation between the provitamin and the vitamin shows higher conductance than those of the reactant and product. We also find experimental evidence of this electrical character by directly measuring current-voltage characteristics on irradiated and nonirradiated samples of the provitamin. The activation of the provitamin D(3) is characterized with an increase in current during the irradiation.

Protonation of O2 adsorbed on a Pt3 island supported on transition metal surfaces.

The reduction in oxygen on bimetallic tips X(S)Pt(3) (X(S) = Co(3), Ni(3), Pt(6), Co(3)Pt(3)) in aqueous acid medium is studied. It is found that a locally neutral neighborhood of an active site in the bimetallic tip as well as adduct hydration assist in the protonation. It is concluded that metallic tips of Pt, Co(3)Pt, and Co are comparable in performance for the oxygen reduction reaction. For an adduct, the larger the bonding energy of the Pt(3)-island to the (X(S)) substrate, the more charged the oxygen molecule becomes for different levels of protonation. Furthermore, if a hydroxyl OOH group is formed as a result of protonation, the interaction of the cation with O(2) decreases with increasing level of hydration.

Mechanism of carbon nanotubes unzipping into graphene ribbons.

The fabrication of graphene nanoribbons from carbon nanotubes (CNTs) treated with potassium permanganate in a concentrated sulfuric acid solution has been reported by Kosynkin et al. [Nature (London) 458, 872 (2009)]. Here we report ab initio density functional theory calculations of such unzipping process. We find that the unzipping starts with the potassium permanganate attacking one of the internal C-C bonds of the CNT, stretching and breaking it. The created defect weakens neighboring bonds along the length of the CNT, making them energetically prone to be attacked too.

Molecular biosensor based on a coordinated iron complex.

A sensor model based on the porphyrin nucleus of the soluble guanylate cyclase enzyme is modeled and tested with nitric oxide and carbon monoxide. Molecular oxygen is tested as a possible interferer. Geometries and electronic structures of the model are assessed by density functional theory. Vibrational circular dichroism (VCD), infrared, and Raman spectra are obtained for the iron complexes uncoordinated and coordinated with the gas moieties. The sensor is capable of detecting the ligands to different extents. Carbon monoxide is less detectable than nitric oxide due to the adopted position of the molecule in the sensor; carbon oxide is aligned with the iron atom, while nitric oxide and molecular oxygens bend with an angle detectable by the VCD. It is suggested that pollutants may be detected and measured with the proposed biosensors.

DNA origami impedance measurement at room temperature.

The frequency response of triangular DNA origami is obtained at room temperature. The sample shows a high impedance at low frequencies, e.g., at zero frequency 20 Gohms, which decreases almost linearly with the logarithm of the frequency reaching a low and flat value at 100 kHz where the impedance turns from capacitive to resistive, concluding that DNA can be used for transmission of signals at frequencies larger than 100 kHz. It is also found that characteristics of DNA cannot be completely disentangled from the characteristics of the substrate on which it is deposited, making the design of molecular circuits more challenging than the design of circuits with present lumped devices; this is a natural feature at the nanoscale.

Sigma-holes from iso-molecular electrostatic potential surfaces.

Visualization of the halobenzene σ-hole region of molecules (PhX, X = Cl, Br, I) was conducted to investigate the nature of the σ-hole present between covalently bonded elements of groups IVB-VIIB (known as halogen bonding for group VIIB) and corresponding negative sites, such as Lewis base lone electron pairs, π-electrons, or anions. The σ-hole consists of a region of poor electron density and often relatively positive electrostatic potential surrounding the outermost portion of the halogen atom along the A-X bond axis. In this work, molecular electrostatic potential (MEP) isosurfaces for PhX obtained from ab initio calculations are examined to determine the σ-hole in 3D, showing the surfaces of corresponding positive and negative regions. Surfaces were mapped for isopotentials of PhX molecules as low as 0.003 V and scaled up by factors of 10 up to 3 V. The σ-hole is revealed as a positive region exposed underneath a predominantly negative MEP isosurface. As isopotential values move away from zero, this hole grows in radius; conversely, its presence completely fades as potential approaches zero with increasing distance from the molecule. This technique can also be used to compare behaviors of neutral molecules and their ionic counterparts like the case of neutral PF6 (not observed experimentally) and the hexafluorophosphate anion, PF6-, a typical counter-ion in commercial Li-ion batteries. The pnictogen halide PF5 features similar MEP trends as the neutral PF6, which features reactive sites, shown as negative potential caps, at specific points in the molecule, similar to those of PF5. The portrayal of MEP behavior in iso-surfaces at specific and practical values of chemical interest is crucial when defining lump parameter sets for Coulombic force fields for molecular dynamics simulations to be used in systems that go from biological macromolecules to crystal engineering to devices to final products. Active chemical sites can be described by the MEP function, V(r), more proficiently than just wavefunctions or electron densities that intrinsically contain the same information, and this is fully enhanced when color-coding electron densities on isopotential surfaces are shown. Graphical abstract The hidden features of orbital holes depicted by iso-potentials.