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1.
Biochemistry ; 58(6): 526-533, 2019 02 12.
Artigo em Inglês | MEDLINE | ID: mdl-30521325

RESUMO

Detailed information on hit-target interaction is very valuable for drug discovery efforts and indispensable for rational hit to lead optimization. We developed a new approach combining NMR in whole-cells in-cell NMR) and docking to characterize hit-target interaction at the atomic level. By using in-cell NMR, we validated target engagement of the antituberculosis imidazopyridine amide (IPA) series with the subunit b of the cytochrome bc1:aa3, the major respiratory terminal oxidase in mycobacteria. The most advanced IPA called Q203 is currently in clinical trial. Using its derivative IPA317, we identified the atoms of the drug interacting with the cytochrome b in whole cells. NMR data and the self-organizing map algorithm were used to cluster a large set of drug-target complex models. The selected ensemble revealed IPA317 in a transient cavity of the cytochrome b, interacting directly with the residue T313, which is the site of spontaneous mutation conferring resistance to the IPA series. Our approach constitutes a pipeline to obtain atomic information on hit-target interactions in the cellular context.


Assuntos
Antituberculosos/farmacologia , Citocromos b/metabolismo , Descoberta de Drogas , Espectroscopia de Ressonância Magnética/métodos , Mycobacterium tuberculosis/efeitos dos fármacos , Mycobacterium tuberculosis/metabolismo , Antituberculosos/química , Humanos
2.
Biochem J ; 473(14): 2239-48, 2016 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-27208170

RESUMO

Bacteria use diverse signalling pathways to adapt gene expression to external stimuli. In Gram-negative bacteria, the binding of scarce nutrients to membrane transporters triggers a signalling process that up-regulates the expression of genes of various functions, from uptake of nutrient to production of virulence factors. Although proteins involved in this process have been identified, signal transduction through this family of transporters is not well understood. In the present study, using an integrative approach (EM, SAXS, X-ray crystallography and NMR), we have studied the structure of the haem transporter HasR captured in two stages of the signalling process, i.e. before and after the arrival of signalling activators (haem and its carrier protein). We show for the first time that the HasR domain responsible for signal transfer: (i) is highly flexible in two stages of signalling; (ii) extends into the periplasm at approximately 70-90 Å (1 Å=0.1 nm) from the HasR ß-barrel; and (iii) exhibits local conformational changes in response to the arrival of signalling activators. These features would favour the signal transfer from HasR to its cytoplasmic membrane partners.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Proteínas de Membrana Transportadoras/química , Proteínas de Membrana Transportadoras/metabolismo , Cristalografia por Raios X , Heme/metabolismo , Espectroscopia de Ressonância Magnética , Microscopia Eletrônica , Ligação Proteica , Serratia marcescens/metabolismo , Transdução de Sinais/fisiologia
3.
Org Biomol Chem ; 15(1): 114-123, 2016 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-27812586

RESUMO

Herein, we report a new process that enables the gram-scale production of a fully synthetic anti-cancer vaccine for human use. This therapeutic vaccine candidate, named MAG-Tn3, is a high-molecular-weight tetrameric glycopeptide encompassing carbohydrate tumor-associated Tn antigen clusters and peptidic CD4+ T-cell epitopes. The synthetic process involves (i) the stepwise solid-phase assembly of protected amino acids, including the high value-added Tn building blocks with only 1.5 equivalents, (ii) a single isolated intermediate, and (iii) the simultaneous deprotection of 36 hindered protective groups. The resulting MAG-Tn3 was unambiguously characterized using a combination of techniques, including a structural analysis by nuclear magnetic resonance spectroscopy. The four peptidic chains are flexible in solution, with a more constrained but extended conformation at the Tn3 antigen motif. Finally, we demonstrate that, when injected into HLA-DR1-expressing transgenic mice, this vaccine induces Tn-specific antibodies that mediate the killing of human Tn-positive tumor cells. These studies led to a clinical batch of the MAG-Tn3, currently investigated in breast cancer patients (phase I clinical trial). The current study demonstrates the feasibility of the multigram-scale synthesis of a highly pure complex glycopeptide, and it opens new avenues for the use of synthetic glycopeptides as drugs in humans.


Assuntos
Vacinas Anticâncer/química , Dendrímeros/química , Glicopeptídeos/química , Neoplasias/prevenção & controle , Vacinas Sintéticas/química , Sequência de Aminoácidos , Animais , Antígenos Glicosídicos Associados a Tumores/química , Antígenos Glicosídicos Associados a Tumores/imunologia , Linfócitos T CD4-Positivos/imunologia , Vacinas Anticâncer/síntese química , Vacinas Anticâncer/uso terapêutico , Dendrímeros/síntese química , Dendrímeros/uso terapêutico , Glicopeptídeos/síntese química , Glicopeptídeos/uso terapêutico , Humanos , Camundongos , Camundongos Transgênicos , Neoplasias/imunologia , Vacinas Sintéticas/uso terapêutico
4.
J Biol Chem ; 289(18): 12647-56, 2014 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-24627479

RESUMO

Malassezia species are ubiquitous residents of human skin and are associated with several diseases such as seborrheic dermatitis, tinea versicolor, folliculitis, atopic dermatitis, and scalp conditions such as dandruff. Host-Malassezia interactions and mechanisms to evade local immune responses remain largely unknown. Malassezia restricta is one of the most predominant yeasts of the healthy human skin, its cell wall has been investigated in this paper. Polysaccharides in the M. restricta cell wall are almost exclusively alkali-insoluble, showing that they play an essential role in the organization and rigidity of the M. restricta cell wall. Fractionation of cell wall polymers and carbohydrate analyses showed that the polysaccharide core of the cell wall of M. restricta contained an average of 5% chitin, 20% chitosan, 5% ß-(1,3)-glucan, and 70% ß-(1,6)-glucan. In contrast to other yeasts, chitin and chitosan are relatively abundant, and ß-(1,3)-glucans constitute a minor cell wall component. The most abundant polymer is ß-(1,6)-glucans, which are large molecules composed of a linear ß-(1,6)-glucan chains with ß-(1,3)-glucosyl side chain with an average of 1 branch point every 3.8 glucose unit. Both ß-glucans are cross-linked, forming a huge alkali-insoluble complex with chitin and chitosan polymers. Data presented here show that M. restricta has a polysaccharide organization very different of all fungal species analyzed to date.


Assuntos
Parede Celular/química , Dermatomicoses/microbiologia , Malassezia/química , Polissacarídeos/análise , Quitina/análise , Quitina/química , Cromatografia Líquida , Humanos , Espectroscopia de Ressonância Magnética , Polissacarídeos/química , Proteoglicanas , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , beta-Glucanas/análise , beta-Glucanas/química
5.
PLoS Pathog ; 7(11): e1002372, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-22102815

RESUMO

A new polysaccharide secreted by the human opportunistic fungal pathogen Aspergillus fumigatus has been characterized. Carbohydrate analysis using specific chemical degradations, mass spectrometry, ¹H and ¹³C nuclear magnetic resonance showed that this polysaccharide is a linear heterogeneous galactosaminogalactan composed of α1-4 linked galactose and α1-4 linked N-acetylgalactosamine residues where both monosacharides are randomly distributed and where the percentage of galactose per chain varied from 15 to 60%. This polysaccharide is antigenic and is recognized by a majority of the human population irrespectively of the occurrence of an Aspergillus infection. GalNAc oligosaccharides are an essential epitope of the galactosaminogalactan that explains the universal antibody reaction due to cross reactivity with other antigenic molecules containing GalNAc stretches such as the N-glycans of Campylobacter jejuni. The galactosaminogalactan has no protective effect during Aspergillus infections. Most importantly, the polysaccharide promotes fungal development in immunocompetent mice due to its immunosuppressive activity associated with disminished neutrophil infiltrates.


Assuntos
Antígenos de Fungos/imunologia , Aspergilose/imunologia , Aspergillus fumigatus/imunologia , Imunossupressores , Polissacarídeos/química , Polissacarídeos/imunologia , Animais , Anticorpos Antifúngicos/imunologia , Apoptose , Aspergillus fumigatus/metabolismo , Configuração de Carboidratos , Sequência de Carboidratos , Parede Celular/imunologia , Reações Cruzadas , Epitopos , Feminino , Interações Hospedeiro-Patógeno , Humanos , Macrófagos/imunologia , Espectroscopia de Ressonância Magnética , Camundongos , Camundongos Endogâmicos C57BL , Infiltração de Neutrófilos , Neutrófilos/imunologia , Neutrófilos/fisiologia , Polissacarídeos/metabolismo , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
6.
J Fungi (Basel) ; 9(2)2023 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-36836270

RESUMO

Earlier studies have shown that the outer layers of the conidial and mycelial cell walls of Aspergillus fumigatus are different. In this work, we analyzed the polysaccharidome of the resting conidial cell wall and observed major differences within the mycelium cell wall. Mainly, the conidia cell wall was characterized by (i) a smaller amount of α-(1,3)-glucan and chitin; (ii) a larger amount of ß-(1,3)-glucan, which was divided into alkali-insoluble and water-soluble fractions, and (iii) the existence of a specific mannan with side chains containing galactopyranose, glucose, and N-acetylglucosamine residues. An analysis of A. fumigatus cell wall gene mutants suggested that members of the fungal GH-72 transglycosylase family play a crucial role in the conidia cell wall ß-(1,3)-glucan organization and that α-(1,6)-mannosyltransferases of GT-32 and GT-62 families are essential to the polymerization of the conidium-associated cell wall mannan. This specific mannan and the well-known galactomannan follow two independent biosynthetic pathways.

7.
J Biol Chem ; 285(4): 2386-96, 2010 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-19948732

RESUMO

A new HPLC method was developed to separate linear from beta(1-6)-branched beta(1-3)-glucooligosaccharides. This methodology has permitted the isolation of the first fungal beta(1-6)/beta(1-3)-glucan branching transglycosidase using a cell wall autolysate of Aspergillus fumigatus (Af). The encoding gene, AfBGT2 is an ortholog of AfBGT1, another transglycosidase of A. fumigatus previously analyzed (Mouyna, I., Hartland, R. P., Fontaine, T., Diaquin, M., Simenel, C., Delepierre, M., Henrissat, B., and Latgé, J. P. (1998) Microbiology 144, 3171-3180). Both enzymes release laminaribiose from the reducing end of a beta(1-3)-linked oligosaccharide and transfer the remaining chain to another molecule of the original substrate. The AfBgt1p transfer occurs at C-6 of the non-reducing end group of the acceptor, creating a kinked beta(1-3;1-6) linear molecule. The AfBgt2p transfer takes place at the C-6 of an internal group of the acceptor, resulting in a beta(1-3)-linked product with a beta(1-6)-linked side branch. The single Afbgt2 mutant and the double Afbgt1/Afbgt2 mutant in A. fumigatus did not display any cell wall phenotype showing that these activities were not responsible for the construction of the branched beta(1-3)-glucans of the cell wall.


Assuntos
Aspergillus fumigatus/enzimologia , Glucana Endo-1,3-beta-D-Glucosidase/isolamento & purificação , Glucana Endo-1,3-beta-D-Glucosidase/metabolismo , beta-Glucanas/isolamento & purificação , beta-Glucanas/metabolismo , Aspergillus fumigatus/genética , Western Blotting , Parede Celular/enzimologia , Celulases/metabolismo , Cromatografia Líquida de Alta Pressão/métodos , Eletroforese em Gel de Poliacrilamida , Proteínas Fúngicas/genética , Proteínas Fúngicas/isolamento & purificação , Proteínas Fúngicas/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Glucana Endo-1,3-beta-D-Glucosidase/genética , Glicosilação , Mutação , Ressonância Magnética Nuclear Biomolecular , Fenótipo
8.
Glycobiology ; 21(1): 109-21, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21030536

RESUMO

The O-antigen (O-Ag), the polysaccharide part of the lipopolysaccharide, is the major target of the serotype-specific protective humoral response elicited upon host infection by Shigella flexneri, the main causal agent of the endemic form of bacillary dysentery. The O-Ag repeat units (RUs) of 12 S. flexneri serotypes share the tetrasaccharide backbone →2)-α-l-Rhap-(1 â†’ 2)-α-l-Rhap-(1 â†’ 3)-α-l-Rhap-(1 â†’ 3)-ß-d-GlcpNAc-(1→, with site-selective glucosylation(s) and/or O-acetylation defining the serotypes. To investigate the conformational basis of serotype specificity, we sampled conformational behaviors during 60 ns of molecular dynamic simulations for oligosaccharides representing three RUs of each one of the O-Ags corresponding to serotypes 1a, 1b, 2a, 2b, 3a, 3b, 4a, 4b, 5a, 5b, X and Y, respectively. The calculated trajectories were checked by nuclear magnetic resonance (NMR) for 1a, 2a, 3a and 5a O-Ags. The simulations predict that in all O-Ags, but 1a and 1b, serotype-specific substitutions of the backbone do not induce any new backbone conformations compared with the linear type O-Ag Y, although they restrain locally the accessible conformational space. Moreover, the influence of any given substituent on the backbone is independent of the eventual presence of other substituents. Finally, only slight differences in conformational behavior between terminal and inner RUs were observed. These results suggest that the reported serotype-specificity of the protective immune response is not due to recognition of distinct backbone conformations, but to binding of the serotype-defining substituents in the O-Ag context. The gained knowledge is discussed in terms of impact on the development of a broad-serotype coverage vaccine.


Assuntos
Lipopolissacarídeos/química , Antígenos O/química , Vacinas contra Shigella/química , Shigella flexneri/imunologia , Sítios de Ligação , Espectroscopia de Ressonância Magnética , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Antígenos O/imunologia , Vacinas contra Shigella/imunologia
9.
Glycobiology ; 21(12): 1570-9, 2011 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21610193

RESUMO

Carbohydrates are likely to maintain significant conformational flexibility in antibody (Ab):carbohydrate complexes. As demonstrated herein for the protective monoclonal Ab (mAb) F22-4 recognizing the Shigella flexneri 2a O-antigen (O-Ag) and numerous synthetic oligosaccharide fragments thereof, the combination of molecular dynamics simulations and nuclear magnetic resonance saturation transfer difference experiments, supported by physicochemical analysis, allows us to determine the binding epitope and its various contributions to affinity without using any modified oligosaccharides. Moreover, the methods used provide insights into ligand flexibility in the complex, thus enabling a better understanding of the Ab affinities observed for a representative set of synthetic O-Ag fragments. Additionally, these complementary pieces of information give evidence to the ability of the studied mAb to recognize internal as well as terminal epitopes of its cognate polysaccharide antigen. Hence, we show that an appropriate combination of computational and experimental methods provides a basis to explore carbohydrate functional mimicry and receptor binding. The strategy may facilitate the design of either ligands or carbohydrate recognition domains, according to needed improvements of the natural carbohydrate:receptor properties.


Assuntos
Anticorpos Monoclonais/química , Simulação de Dinâmica Molecular , Ressonância Magnética Nuclear Biomolecular , Oligossacarídeos/química
10.
Front Immunol ; 12: 749074, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34867977

RESUMO

In this study, the human immune response mechanisms against Sporothrix brasiliensis and Sporothrix schenckii, two causative agents of human and animal sporotrichosis, were investigated. The interaction of S. brasiliensis and S. schenckii with human monocyte-derived macrophages (hMDMs) was shown to be dependent on the thermolabile serum complement protein C3, which facilitated the phagocytosis of Sporothrix yeast cells through opsonization. The peptidorhamnomannan (PRM) component of the cell walls of these two Sporothrix yeasts was found to be one of their surfaces exposed pathogen-associated molecular pattern (PAMP), leading to activation of the complement system and deposition of C3b on the Sporothrix yeast surfaces. PRM also showed direct interaction with CD11b, the specific component of the complement receptor-3 (CR3). Furthermore, the blockade of CR3 specifically impacted the interleukin (IL)-1ß secretion by hMDM in response to both S. brasiliensis and S. schenckii, suggesting that the host complement system plays an essential role in the inflammatory immune response against these Sporothrix species. Nevertheless, the structural differences in the PRMs of the two Sporothrix species, as revealed by NMR, were related to the differences observed in the host complement activation pathways. Together, this work reports a new PAMP of the cell surface of pathogenic fungi playing a role through the activation of complement system and via CR3 receptor mediating an inflammatory response to Sporothrix species.


Assuntos
Antígenos de Fungos/imunologia , Proteínas do Sistema Complemento/imunologia , Glicoproteínas/imunologia , Macrófagos/imunologia , Sporothrix , Parede Celular/imunologia , Ativação do Complemento , Citocinas/imunologia , Humanos , L-Lactato Desidrogenase/imunologia , Antígeno de Macrófago 1/imunologia , Macrófagos/microbiologia , Moléculas com Motivos Associados a Patógenos/imunologia , Fagocitose
11.
Sci Rep ; 9(1): 7438, 2019 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-31092861

RESUMO

The human protein tyrosine phosphatase non-receptor type 3 (PTPN3) is a PDZ (PSD-95/Dlg/ZO-1) domain-containing phosphatase with a tumor-suppressive or a tumor-promoting role in many cancers. Interestingly, the high-risk genital human papillomavirus (HPV) types 16 and 18 target the PDZ domain of PTPN3. The presence of a PDZ binding motif (PBM) on E6 confers interaction with a number of different cellular PDZ domain-containing proteins and is a marker of high oncogenic potential. Here, we report the molecular basis of interaction between the PDZ domain of PTPN3 and the PBM of the HPV E6 protein. We combined biophysical, NMR and X-ray experiments to investigate the structural and functional properties of the PDZ domain of PTPN3. We showed that the C-terminal sequences from viral proteins encompassing a PBM interact with PTPN3-PDZ with similar affinities to the endogenous PTPN3 ligand MAP kinase p38γ. PBM binding stabilizes the PDZ domain of PTPN3. We solved the X-ray structure of the PDZ domain of PTPN3 in complex with the PBM of the HPV E6 protein. The crystal structure and the NMR chemical shift mapping of the PTPN3-PDZ/peptide complex allowed us to pinpoint the main structural determinants of recognition of the C-terminal sequence of the E6 protein and the long-range perturbations induced upon PBM binding.


Assuntos
Proteínas de Ligação a DNA/metabolismo , Papillomavirus Humano 16/metabolismo , Papillomavirus Humano 18/metabolismo , Proteínas Oncogênicas Virais/metabolismo , Proteína Tirosina Fosfatase não Receptora Tipo 3/metabolismo , Proteínas Repressoras/metabolismo , Sequência de Aminoácidos , Cristalografia por Raios X , Humanos , Ligantes , Proteína Quinase 12 Ativada por Mitógeno/metabolismo , Domínios PDZ , Infecções por Papillomavirus/metabolismo , Monoéster Fosfórico Hidrolases/metabolismo , Ligação Proteica , Estabilidade Proteica , Proteína Tirosina Fosfatase não Receptora Tipo 3/química , Proteína Tirosina Fosfatase não Receptora Tipo 3/genética , Relação Estrutura-Atividade
12.
Glycobiology ; 18(1): 84-96, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17971386

RESUMO

Fungal glycosylinositolphosphoceramides (GIPCs) are involved in cell growth and fungal-host interactions. In this study, six GIPCs from the mycelium of the human pathogen Aspergillus fumigatus were purified and characterized using Q-TOF mass spectrometry and 1H, 13C, and 31P NMR. All structures have the same inositolphosphoceramide moiety with the presence of a C(18:0)-phytosphingosine conjugated to a 2-hydroxylated saturated fatty acid (2-hydroxy-lignoceric acid). The carbohydrate moiety defines two types of GIPC. The first, a mannosylated zwitterionic glycosphingolipid contains a glucosamine residue linked in alpha1-2 to an inositol ring that has been described in only two other fungal pathogens. The second type of GIPC presents an alpha-Manp-(1-->3)-alpha-Manp-(1-->2)-IPC common core. A galactofuranose residue is found in four GIPC structures, mainly at the terminal position via a beta1-2 linkage. Interestingly, this galactofuranose residue could be substituted by a choline-phosphate group, as observed only in the GIPC of Acremonium sp., a plant pathogen.


Assuntos
Aspergillus fumigatus/química , Glicoesfingolipídeos/química , Aspergillus fumigatus/metabolismo , Glicoesfingolipídeos/isolamento & purificação , Glicoesfingolipídeos/metabolismo , Ressonância Magnética Nuclear Biomolecular , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
13.
mBio ; 8(3)2017 06 20.
Artigo em Inglês | MEDLINE | ID: mdl-28634239

RESUMO

ß-(1,3)-Glucan, the major fungal cell wall component, ramifies through ß-(1,6)-glycosidic linkages, which facilitates its binding with other cell wall components contributing to proper cell wall assembly. Using Saccharomyces cerevisiae as a model, we developed a protocol to quantify ß-(1,6)-branching on ß-(1,3)-glucan. Permeabilized S. cerevisiae and radiolabeled substrate UDP-(14C)glucose allowed us to determine branching kinetics. A screening aimed at identifying deletion mutants with reduced branching among them revealed only two, the bgl2Δ and gas1Δ mutants, showing 15% and 70% reductions in the branching, respectively, compared to the wild-type strain. Interestingly, a recombinant Gas1p introduced ß-(1,6)-branching on the ß-(1,3)-oligomers following its ß-(1,3)-elongase activity. Sequential elongation and branching activity of Gas1p occurred on linear ß-(1,3)-oligomers as well as Bgl2p-catalyzed products [short ß-(1,3)-oligomers linked by a linear ß-(1,6)-linkage]. The double S. cerevisiae gas1Δ bgl2Δ mutant showed a drastically sick phenotype. An ScGas1p ortholog, Gel4p from Aspergillus fumigatus, also showed dual ß-(1,3)-glucan elongating and branching activity. Both ScGas1p and A. fumigatus Gel4p sequences are endowed with a carbohydrate binding module (CBM), CBM43, which was required for the dual ß-(1,3)-glucan elongating and branching activity. Our report unravels the ß-(1,3)-glucan branching mechanism, a phenomenon occurring during construction of the cell wall which is essential for fungal life.IMPORTANCE The fungal cell wall is essential for growth, morphogenesis, protection, and survival. In spite of being essential, cell wall biogenesis, especially the core ß-(1,3)-glucan ramification, is poorly understood; the ramified ß-(1,3)-glucan interconnects other cell wall components. Once linear ß-(1,3)-glucan is synthesized by plasma membrane-bound glucan synthase, the subsequent event is its branching event in the cell wall space. Using Saccharomyces cerevisiae as a model, we identified GH72 and GH17 family glycosyltransferases, Gas1p and Bgl2p, respectively, involved in the ß-(1,3)-glucan branching. The sick phenotype of the double Scgas1Δ bgl2Δ mutant suggested that ß-(1,3)-glucan branching is essential. In addition to ScGas1p, GH72 family ScGas2p and Aspergillus fumigatus Gel4p, having CBM43 in their sequences, showed dual ß-(1,3)-glucan elongating and branching activity. Our report identifies the fungal cell wall ß-(1,3)-glucan branching mechanism. The essentiality of ß-(1,3)-glucan branching suggests that enzymes involved in the glucan branching could be exploited as antifungal targets.


Assuntos
Parede Celular/metabolismo , Glucana Endo-1,3-beta-D-Glucosidase/metabolismo , Glicoproteínas de Membrana/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/metabolismo , beta-Glucanas/metabolismo , Aspergillus fumigatus/enzimologia , Aspergillus fumigatus/genética , Aspergillus fumigatus/metabolismo , Deleção de Genes , Testes Genéticos , Glucana Endo-1,3-beta-D-Glucosidase/genética , Glicoproteínas de Membrana/genética , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
14.
Protein Sci ; 11(4): 757-65, 2002 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-11910020

RESUMO

The HasA(SM) hemophore, secreted by Serratia marcescens, binds free or hemoprotein bound heme with high affinity and delivers it to a specific outer membrane receptor, HasR. In HasA(SM), heme is held by two loops and coordinated to iron by two residues, His 32 and Tyr 75. A third residue His 83 was shown recently to play a crucial role in heme ligation. To address the mechanistic issues of the heme capture and release processes, the histidine protonation states were studied in both apo- and holo-forms of HasA(SM) in solution. Holo-HasA(SM) was formed with gallium-protoporphyrin IX (GaPPIX), giving rise to a diamagnetic protein. By use of heteronuclear correlation NMR spectroscopy, the imidazole side-chain (15)N and (1)H resonances of the six HasA(SM) histidines were assigned and their pKa values and predominant tautomeric states according to pH were determined. We show that protonation states of the heme pocket histidines can modulate the nucleophilic character of the two axial ligands and, consequently, control the heme binding. In particular, the essential role of the His 83 is emphasized according to its direct interaction with Tyr 75.


Assuntos
Proteínas de Bactérias/química , Proteínas de Transporte , Gálio/metabolismo , Heme/metabolismo , Histidina/química , Proteínas de Membrana/química , Protoporfirinas/metabolismo , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Concentração de Íons de Hidrogênio , Espectroscopia de Ressonância Magnética , Proteínas de Membrana/metabolismo , Modelos Moleculares , Ligação Proteica , Conformação Proteica
15.
PLoS One ; 9(4): e89502, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24727671

RESUMO

Bacteria use diverse signaling pathways to control gene expression in response to external stimuli. In Gram-negative bacteria, the binding of a nutrient is sensed by an outer membrane transporter. This signal is then transmitted to an antisigma factor and subsequently to the cytoplasm where an ECF sigma factor induces expression of genes related to the acquisition of this nutrient. The molecular interactions involved in this transmembrane signaling are poorly understood and structural data on this family of antisigma factor are rare. Here, we present the first structural study of the periplasmic domain of an antisigma factor and its interaction with the transporter. The study concerns the signaling in the heme acquisition system (Has) of Serratia marcescens. Our data support unprecedented partially disordered periplasmic domain of an anti-sigma factor HasS in contact with a membrane-mimicking environment. We solved the 3D structure of the signaling domain of HasR transporter and identified the residues at the HasS-HasR interface. Their conservation in several bacteria suggests wider significance of the proposed model for the understanding of bacterial transmembrane signaling.


Assuntos
Proteínas de Bactérias/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Serratia marcescens/metabolismo , Transdução de Sinais/fisiologia , Periplasma/metabolismo , Ligação Proteica
16.
PLoS One ; 8(3): e58964, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23527057

RESUMO

TonB is a key protein in active transport of essential nutrients like vitamin B12 and metal sources through the outer membrane transporters of Gram-negative bacteria. This inner membrane protein spans the periplasm, contacts the outer membrane receptor by its periplasmic domain and transduces energy from the cytoplasmic membrane pmf to the receptor allowing nutrient internalization. Whereas generally a single TonB protein allows the acquisition of several nutrients through their cognate receptor, in some species one particular TonB is dedicated to a specific system. Despite a considerable amount of data available, the molecular mechanism of TonB-dependent active transport is still poorly understood. In this work, we present a structural study of a TonB-like protein, HasB dedicated to the HasR receptor. HasR acquires heme either free or via an extracellular heme transporter, the hemophore HasA. Heme is used as an iron source by bacteria. We have solved the structure of the HasB periplasmic domain of Serratia marcescens and describe its interaction with a critical region of HasR. Some important differences are observed between HasB and TonB structures. The HasB fold reveals a new structural class of TonB-like proteins. Furthermore, we have identified the structural features that explain the functional specificity of HasB. These results give a new insight into the molecular mechanism of nutrient active transport through the bacterial outer membrane and present the first detailed structural study of a specific TonB-like protein and its interaction with the receptor.


Assuntos
Proteínas de Bactérias/química , Proteínas de Membrana/química , Dobramento de Proteína , Sequência de Aminoácidos , Aminoácidos , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Proteínas de Membrana/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Peptídeos/química , Peptídeos/metabolismo , Ligação Proteica , Conformação Proteica , Estrutura Secundária de Proteína , Alinhamento de Sequência
17.
Biomol NMR Assign ; 7(1): 43-6, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22415545

RESUMO

TonB-dependent transporters (TBDTs) are bacterial outer membrane proteins that internalize nutrients such as vitamin B12, metal complexes, heme, some carbohydrates, etc. In addition to their transport activity, several TBDTs are also involved in a signalling cascade from the cell surface into the cytoplasm, via their periplasmic signalling domain. Here we report the backbone and side chain resonance assignments of the signalling domain of HasR, a TonB-dependent outer membrane heme transporter from Serratia marcescens as a first step towards its structural study.


Assuntos
Proteínas de Bactérias/química , Proteínas de Membrana Transportadoras/química , Ressonância Magnética Nuclear Biomolecular , Periplasma/metabolismo , Proteínas de Bactérias/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Estrutura Terciária de Proteína , Serratia marcescens/citologia
18.
Sci Signal ; 5(237): ra58, 2012 Aug 14.
Artigo em Inglês | MEDLINE | ID: mdl-22894835

RESUMO

PTEN (phosphatase and tensin homolog deleted on chromosome 10) and MAST2 (microtubule-associated serine and threonine kinase 2) interact with each other through the PDZ domain of MAST2 (MAST2-PDZ) and the carboxyl-terminal (C-terminal) PDZ domain-binding site (PDZ-BS) of PTEN. These two proteins function as negative regulators of cell survival pathways, and silencing of either one promotes neuronal survival. In human neuroblastoma cells infected with rabies virus (RABV), the C-terminal PDZ domain of the viral glycoprotein (G protein) can target MAST2-PDZ, and RABV infection triggers neuronal survival in a PDZ-BS-dependent fashion. These findings suggest that the PTEN-MAST2 complex inhibits neuronal survival and that viral G protein disrupts this complex through competition with PTEN for binding to MAST2-PDZ. We showed that the C-terminal sequences of PTEN and the viral G protein bound to MAST2-PDZ with similar affinities. Nuclear magnetic resonance structures of these complexes exhibited similar large interaction surfaces, providing a structural basis for their binding specificities. Additionally, the viral G protein promoted the nuclear exclusion of PTEN in infected neuroblastoma cells in a PDZ-BS-dependent manner without altering total PTEN abundance. These findings suggest that formation of the PTEN-MAST2 complex is specifically affected by the viral G protein and emphasize how disruption of a critical protein-protein interaction regulates intracellular PTEN trafficking. In turn, the data show how the viral protein might be used to decipher the underlying molecular mechanisms and to clarify how the subcellular localization of PTEN regulates neuronal survival.


Assuntos
Glicoproteínas/metabolismo , Proteínas Associadas aos Microtúbulos/metabolismo , Modelos Moleculares , Neurônios/fisiologia , PTEN Fosfo-Hidrolase/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Vírus da Raiva/metabolismo , Proteínas Virais/metabolismo , Ligação Competitiva , Western Blotting , Calorimetria , Linhagem Celular Tumoral , Sobrevivência Celular/fisiologia , Glicoproteínas/química , Humanos , Imuno-Histoquímica , Marcação por Isótopo , Proteínas Associadas aos Microtúbulos/química , Neurônios/metabolismo , Ressonância Magnética Nuclear Biomolecular , Domínios PDZ/fisiologia , PTEN Fosfo-Hidrolase/química , Proteínas Serina-Treonina Quinases/química , Espectrometria de Fluorescência , Proteínas Virais/química
19.
Carbohydr Res ; 344(15): 1960-7, 2009 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-19709651

RESUMO

A glucuronic acid containing glycerolipid was isolated from the filamentous fungi Aspergillus fumigatus. This acidic glycolipid was extracted from the membrane of mycelium and purified by two successive chromatographic steps on DEAE-Sephadex and Silica columns. Chemical structural analysis was performed using methylation, gas-chromatography, gas-chromatography-mass spectrometry, nano-electrospray mass spectrometry and (1)H/(13)C NMR spectra. The corresponding structure is a 3-(O-alpha-glucuronyl)-1,2-diacyl-sn-glycerol, where acyl chains are mainly C(16:0), C(18:0), C(18:1), and C(18:2). This alpha-GlcA-diacylglycerol is not present in fungal conidia. This acidic glycerolipid is described here for the first time in a fungal species. Two homologs of UDP-glucose dehydrogenase that convert UDP-glucose into UDP-glucuronic acid, are present in A. fumigatus genome, UGD1 and UGD2. Gene deletion showed that only UGD1 is essential for the biosynthesis of GlcA-DG. However, no particular phenotype has been observed in the Ugd1Delta mutant. Biological function of this acidic glycolipid remains unknown in A. fumigatus.


Assuntos
Aspergillus fumigatus/metabolismo , Ácido Glucurônico/química , Glicolipídeos/química , Micélio/metabolismo , Aspergillus fumigatus/genética , Cromatografia Gasosa , Cromatografia Gasosa-Espectrometria de Massas , Glicolipídeos/genética , Glicolipídeos/metabolismo , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Micélio/genética
20.
Biomol NMR Assign ; 3(1): 45-8, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19636944

RESUMO

Most of microbes hijack the cellular machinery to their advantage by interacting with specific target of the host cell. Glycoprotein of rabies virus is a key factor controlling the homeostasis of infected neuronal cells and proteins belonging to the human microtubule associated serine threonine kinase family have been identified as potential cellular partners. As a first step towards its structural study, we have assigned the backbone and side chain nuclei resonances of the PDZ domain (PSD-95, Discs Large, ZO-1) of MAST205 in complex with the C-terminal residues of the glycoprotein of rabies virus. The BMRB accession code is 155972.


Assuntos
Glicoproteínas/química , Espectroscopia de Ressonância Magnética/métodos , Proteínas Associadas aos Microtúbulos/química , Proteínas Serina-Treonina Quinases/química , Vírus da Raiva/química , Proteínas Virais/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Sítios de Ligação , Isótopos de Carbono/química , Dados de Sequência Molecular , Complexos Multiproteicos/química , Isótopos de Nitrogênio/química , Ligação Proteica , Estrutura Terciária de Proteína , Prótons
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