Rotational Dynamics of Quantum State-Selected Symmetric-Top Molecules in Nonresonant Femtosecond Laser Fields.

Rotational dynamics of quantum state selected and unselected CH3I molecules in intense femtosecond laser fields has been studied. The orientation and alignment evolutions are derived from a pump-probe measurement and in good agreement with the numerical results from the time-dependent Schrödinger equation (TDSE) calculation. The different rotational transitions through nonresonant Raman process have been assigned from the Fourier analysis of the orientation and alignment revivals. These revivals are derived from a pump-probe measurement and in good agreement with the numerical results from the TDSE calculation. For the molecules in rotational state |1, ±1, ∓1⟩, the transitions can be assigned to ΔJ = ±1, ±2, while for thermally populated molecules, the transitions are ΔJ = ±2. Our results illustrate that the orientation and alignment revivals of the rotational quantum-state-selected molecules give a deep insight into the rotational excitation pathways for the transition of different rotational states of molecules in ultrafast laser fields.

Lethal mutagenesis failure may augment viral adaptation.

Lethal mutagenesis, the attempt to extinguish a population by elevating its mutation rate, has been endorsed in the virology literature as a promising approach for treating viral infections. In support of the concept, in vitro studies have forced viral extinction with high doses of mutagenic drugs. However, the one known mutagenic drug used on patients commonly fails to cure infections, and in vitro studies typically find a wide range of mutagenic conditions permissive for viral growth. A key question becomes how subsequent evolution is affected if the viral population is mutated but avoids extinction--Is viral adaptation augmented rather than suppressed? Here we consider the evolution of highly mutated populations surviving mutagenesis, using the DNA phage T7. In assays using inhibitory hosts, whenever resistance mutants were observed, the mutagenized populations exhibited higher frequencies, but some inhibitors blocked plaque formation by even the mutagenized stock. Second, outgrowth of previously mutagenized populations led to rapid and potentially complete fitness recovery but polymorphism was slow to decay, and mutations exhibited inconsistent patterns of change. Third, the combination of population bottlenecks with mutagenesis did cause fitness declines, revealing a vulnerability that was not apparent from mutagenesis of large populations. The results show that a population surviving high mutagenesis may exhibit enhanced adaptation in some environments and experience little negative fitness consequences in many others.

The modified quasi-quantum treatment of rotationally inelastic NO(X)-He scattering.

A modified quasi-quantum treatment (MQQT) of molecular scattering has been developed to account for the softness of the repulsive part of the anisotropic atom-molecule PES. A contour of the PES is chosen such that the barrier height is just large enough to reflect the incoming kinetic energy, directed anti-parallel to the hard shell normal at the site of impact. The resulting rotationally inelastic quantum state resolved DCSs and ICSs of He + NO(X) at Ecol = 508 cm(-1) are compared to those obtained from regular QQT and from quantum mechanically exact calculations performed on the full highest quality ab initio Vsum PES. The MQQT parity changing DCSs for Δj ≤ 4 exhibit much better agreement with the QM DCSs than is obtained using regular QQT, particularly in the forward scattered direction. The improvements upon the remaining MQQT DCSs with respect to the regular QQT were minor, due to the near incompressible hard shell character of the n ≠ 1 or 3 anisotropic Legendre polynomial terms of the PES.

Laser induced alignment of state-selected CH3I.

Hexapole state selection is used to prepare CH3I molecules in the |JKM〉 = |1±1∓1〉 state. The molecules are aligned in a strong 800 nm laser field, which is linearly polarised perpendicular to the weak static extraction field E of the time of flight setup. The molecules are subsequently ionised by a second time delayed probe laser pulse. It will be shown that in this geometry at high enough laser intensities the Newton sphere has sufficient symmetry to apply the inverse Abel transformation to reconstruct the three dimensional distribution from the projected ion image. The laser induced controllable alignment was found to have the upper and lower extreme values of 〈P2(cos θ)〉 = 0.7 for the aligned molecule and -0.1 for the anti-aligned molecule, coupled to 〈P4(cos θ)〉 between 0.3 and 0.0. The method to extract the alignment parameters 〈P2(cos θ)〉 and 〈P4(cos θ)〉 directly from the velocity map ion images will be discussed.

A general scaling rule for the collision energy dependence of a rotationally inelastic differential cross-section and its application to NO(X) + He.

The quasi-quantum treatment (QQT) (Gijsbertsen et al., J. Am. Chem. Soc., 2006, 128, 8777) provides a physically compelling framework for the evaluation of rotationally inelastic scattering, including the differential cross sections (DCS). In this work the QQT framework is extended to treat the DCS in the classically forbidden region as well as the classically allowed region. Most importantly, the QQT is applied to the collision energy dependence of the angular distributions of these DCSs. This leads to an analytical formalism that reveals a scaling relationship between the DCS calculated at a particular collision energy and the DCS at other collision energies. This scaling is shown to be exact for QM calculated or experimental DCSs if the magnitude of the (kinematic apse frame) underlying scattering amplitude depends solely on the projection of the incoming momentum vector onto the kinematic apse vector. The QM DCSs of the NO(X)-He collision system were found to obey this scaling law nearly perfectly for energies above 63 meV. The mathematical derivation is accompanied by a mechanistic description of the Feynman paths that contribute to the scattering amplitude in the classically allowed and forbidden regions, and the nature of the momentum transfer during the collision process. This scaling relationship highlights the nature of (and limits to) the information that is obtainable from the collision-energy dependence of the DCS, and allows a description of the relevant angular range of the DCSs that embodies this information.

CO blocking of D2 dissociative adsorption on Ru(0001).

The influence of pre-adsorbed CO on the dissociative adsorption of D(2) on Ru(0001) is studied by molecular-beam techniques. We determine the initial dissociation probability of D(2) as a function of its kinetic energy for various CO pre-coverages between 0.00 and 0.67 monolayers (ML) at a surface temperature of 180 K. The results indicate that CO blocks D(2) dissociation and perturbs the local surface reactivity up to the nearest-neighbour Ru atoms. Non-activated sticking and dissociation become less important with increasing CO coverage, and vanish at theta(CO) approximately 0.33 ML. In addition, at high D(2) kinetic energy (>35 kJ mol(-1)) the site-blocking capability of CO decreases rapidly. These observations are attributed to a CO-induced activation barrier for D(2) dissociation in the vicinity of CO molecules.

Inelastic Scattering of NO by Kr: Rotational Polarization over a Rainbow.

We use molecular beams and ion imaging to determine quantum state resolved angular distributions of NO radicals after inelastic collision with Kr. We also determine both the sense and the plane of rotation (the rotational orientation and alignment, respectively) of the scattered NO. By full selection and then detection of the quantum parity of the NO molecule, our experiment is uniquely sensitive to quantum interference. For forward-scattered NO, we report hitherto unseen changes in the plane and sense of rotation with scattering angle and show, remarkably, that the rotation of the NO molecule after collision can be near-maximally oriented for certain transitions and scattering angles. These effects are enhanced by the full parity selection in the experiment and result from the interplay between attractive and repulsive forces.

Measurements and quasi-quantum modeling of the steric asymmetry and parity propensities in state-to-state rotationally inelastic scattering of NO (2Pi1/2) with D2.

Relative integrated cross sections are measured for spin-orbit-conserving, rotationally inelastic scattering of NO (2Pi1/2), hexapole-selected in the upper Lambda-doublet level of the ground rotational state (j = 0.5), in collisions with D2 at a nominal energy of 551 cm-1. The final state of the NO molecule is detected by laser-induced fluorescence (LIF). The state-selected NO molecule is oriented with either the N end or the O end toward the incoming D2 molecule by application of a static electric field E in the scattering region. This field is directed parallel or antiparallel to the relative velocity vector v. Comparison of signals taken for the different applied field directions gives the experimental steric asymmetry SA, defined by SA = (sigma v upward arrow downward arrow E - sigma v upward arrow upward arrow E)/(sigma v upward arrow downward arrow E + sigma v upward arrow upward arrow E), which is equal to within a factor of -1 to the molecular steric effect, Si-->f identical with (sigmaD2-->NO - sigmaD2-->ON)/(sigmaD2-->NO + sigmaD2-->ON). The dependence of the integral inelastic cross section on the incoming Lambda-doublet component is also measured as a function of the final rotational (jfinal) and Lambda-doublet (epsilonfinal) state. The measured steric asymmetries are similar to those previously observed for NO-He scattering. Spin-orbit manifold-conserving collisions exhibit a larger propensity for parity conservation than their NO-He counterparts. The results are interpreted in the context of the recently developed quasi-quantum treatment (QQT) of rotationally inelastic scattering [Gijsbertsen, A.; Linnartz, H.; Taatjes, C. A.; Stolte, S. J. Am. Chem. Soc. 2006, 128, 8777]. The QQT predictions can be inverted to obtain a fitted hard-shell potential that reproduces the experimental steric asymmetry; this fitted potential gives an empirical estimate of the anisotropy of the repulsive interaction between NO and D2. QQT computation of the differential cross section using this simple model potential shows reasonable agreement with the measured differential cross sections.

Parity-dependent rotational rainbows in D2-NO and He-NO differential collision cross sections.

The (j', Omega', epsilon') dependent differential collision cross sections of D2 with fully state selected (j = 12, Omega = 12, epsilon = -1) NO have been determined at a collision energy of about 550 cm(-1). The collisionally excited NO molecules are detected by (1+1') resonance enhanced multiphoton ionization combined using velocity-mapped ion-imaging. The results are compared to He-NO scattering results and tend to be more forward scattered for the same final rotational state. Both for collisions of the atomic He and the molecular D2 with NO, scattering into pairs of rotational states with the same value of n = j' - epsilon epsilon'2 yields the same angular dependence of the cross section. This "parity propensity rule" remains present both for spin-orbit conserving and spin-orbit changing transitions. The maxima in the differential cross sections-that reflect rotational rainbows-have been extracted from the D2-NO and the He-NO differential cross sections. These maxima are found to be distinct for odd and even parity pair number n. Rainbow positions of parity changing transitions (n is odd) occur at larger scattering angles than those of parity conserving transitions (n is even). Parity conserving transitions exhibit-from a classical point of view-a larger effective eccentricity of the shell. No rainbow doubling due to collisions onto either the N-end or the O-end was observed. From a classical point of view the presence of a double rainbow is expected. Rotational excitation of the D2 molecules has not been observed.

Quantum interference as the source of steric asymmetry and parity propensity rules in NO-rare gas inelastic scattering.

Rotationally inelastic scattering of rare gas atoms and oriented NO molecules exhibits a remarkable alternation in the sign of steric asymmetry between even and odd changes in rotational quantum number. This effect has also been found in full quantum-mechanical scattering calculations. However, until now no physical picture has been given for the alternation. In this work, a newly developed quasi-quantum treatment (QQT) provides the first demonstration that quantum interferences between different orientations of the repulsive potential (that are present in the oriented wave function) are the source of this alternation. Further, from application of the treatment to collisions of nonoriented molecules, a previously unrecognized propensity rule is derived. The angular dependence of the cross sections for excitation to neighboring rotational states with the same parity is shown to be similar, except for a prefactor. Experimental results are presented to support this rule. Unlike conventional quantum-mechanical (or semiclassical) treatments, QQT requires no summation over the orbital angular momentum quantum number l or integration over the impact parameter b. This eliminates the need to solve large sets of coupled differential equations that couple l and rotational state channels among which interference can occur. The QQT provides a physical interpretation of the scattering amplitude that can be represented by a Legendre moment. Application of the QQT on a simple hard-shell potential leads to near-quantitative agreement with experimental observations.

Steric asymmetry and lambda-doublet propensities in state-to-state rotationally inelastic scattering of NO(2Pi(1/2)) with He.

Relative integrated cross sections are measured for rotationally inelastic scattering of NO(2Pi(1/2)),hexapole selected in the upper lambda-doublet level of the ground rotational state (j = 0.5), in collisions with He at a nominal energy of 514 cm(-1). Application of a static electric field E in the scattering region, directed parallel or antiparallel to the relative velocity vector v, allows the state-selected NO molecule to be oriented with either the N end or the O end towards the incoming He atom. Laser-induced fluorescence detection of the final state of the NO molecule is used to determine the experimental steric asymmetry, [formula: see text], which is equal to within a factor of (- 1) to the molecular steric effect, S(i-->f) is identical with (sigma(He-->NO) - (sigma(He-->ON))/(sigma(He-->NO) + sigma(He-->ON)). The dependence of the integral inelastic cross section on the incoming lambda-doublet component is also observed as a function of the final rotational (j'), spin-orbit (omega'), and lambda-doublet (epsilon') state. The measured steric asymmetries are significantly larger than previously observed for NO-Ar scattering, supporting earlier proposals that the repulsive part of the interaction potential is responsible for the steric asymmetry. In contrast to the case of scattering with Ar, the steric asymmetry of NO-He collisions is not very sensitive to the value of omega'. However, the lambda-doublet propensities are very different for [omega=0.5(F1)-->omega'= 1.5(F2)] and [omega=0.5(F1)-->omega'=0.5(F1)] transitions. Spin-orbit manifold conserving collisions exhibit a propensity for parity conservation at low deltaj, but spin-orbit manifold changing collisions do not show this propensity. In conjunction with the experiments, state-to-state cross sections for scattering of oriented NO(2Pi) molecules with He atoms are predicted from close-coupling calculations on restricted coupled-cluster methods including single, double, and noniterated triple excitations [J. Klos, G. Chalasinski, M. T. Berry, R.Bukowski, and S. M. Cybulski, J. Chem. Phys. 112, 2195 (2000)] and correlated electron-pair approximation [M. Yang and M. H. Alexander, J. Chem. Phys. 103, 6973 (1995)] potential energy surfaces. The calculated steric asymmetry S(i-->f) of the inelastic cross sections at Etr= 514 cm(-1) is in reasonable agreement with that derived from the present experimental measurements for both spin-manifold conserving (F1-->Fl) and spin-manifold changing (F1 --F2) collisions, except that the overall sign of the effect is opposite. Additionally, calculated field-free integral cross sections for collisions at Etr = 508 cm(-1) are compared to the experimental data of Joswig et al. [J. Chem. Phys.85, 1904 (1986)]. Finally, the calculated differential cross section for collision energy Etr= 491 cm(-1) is compared to experimental data of Westley et al. [J. Chem. Phys. 114, 2669 (2001)] for the spin-orbit conserving transition F1 (j = 0.5) -F1f (j' = 3.5).