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Our understanding of bird song, a model system for animal communication and the neurobiology of learning, depends critically on making reliable, validated comparisons between the complex multidimensional syllables that are used in songs. However, most assessments of song similarity are based on human inspection of spectrograms, or computational methods developed from human intuitions. Using a novel automated operant conditioning system, we collected a large corpus of zebra finches' (Taeniopygia guttata) decisions about song syllable similarity. We use this dataset to compare and externally validate similarity algorithms in widely-used publicly available software (Raven, Sound Analysis Pro, Luscinia). Although these methods all perform better than chance, they do not closely emulate the avian assessments. We then introduce a novel deep learning method that can produce perceptual similarity judgements trained on such avian decisions. We find that this new method outperforms the established methods in accuracy and more closely approaches the avian assessments. Inconsistent (hence ambiguous) decisions are a common occurrence in animal behavioural data; we show that a modification of the deep learning training that accommodates these leads to the strongest performance. We argue this approach is the best way to validate methods to compare song similarity, that our dataset can be used to validate novel methods, and that the general approach can easily be extended to other species.
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Aprendizado Profundo , Tentilhões , Vocalização Animal , Animais , Vocalização Animal/fisiologia , Tentilhões/fisiologia , Algoritmos , Biologia Computacional/métodos , Julgamento/fisiologia , Masculino , Espectrografia do Som/métodos , Condicionamento Operante/fisiologia , HumanosRESUMO
Insect population numbers and biodiversity have been rapidly declining with time, and monitoring these trends has become increasingly important for conservation measures to be effectively implemented. But monitoring methods are often invasive, time and resource intense, and prone to various biases. Many insect species produce characteristic sounds that can easily be detected and recorded without large cost or effort. Using deep learning methods, insect sounds from field recordings could be automatically detected and classified to monitor biodiversity and species distribution ranges. We implement this using recently published datasets of insect sounds (up to 66 species of Orthoptera and Cicadidae) and machine learning methods and evaluate their potential for acoustic insect monitoring. We compare the performance of the conventional spectrogram-based audio representation against LEAF, a new adaptive and waveform-based frontend. LEAF achieved better classification performance than the mel-spectrogram frontend by adapting its feature extraction parameters during training. This result is encouraging for future implementations of deep learning technology for automatic insect sound recognition, especially as larger datasets become available.
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Insetos , Som , Animais , Aprendizado de Máquina , Tecnologia , BiodiversidadeRESUMO
The ongoing biodiversity crisis, driven by factors such as land-use change and global warming, emphasizes the need for effective ecological monitoring methods. Acoustic monitoring of biodiversity has emerged as an important monitoring tool. Detecting human voices in soundscape monitoring projects is useful both for analyzing human disturbance and for privacy filtering. Despite significant strides in deep learning in recent years, the deployment of large neural networks on compact devices poses challenges due to memory and latency constraints. Our approach focuses on leveraging knowledge distillation techniques to design efficient, lightweight student models for speech detection in bioacoustics. In particular, we employed the MobileNetV3-Small-Pi model to create compact yet effective student architectures to compare against the larger EcoVAD teacher model, a well-regarded voice detection architecture in eco-acoustic monitoring. The comparative analysis included examining various configurations of the MobileNetV3-Small-Pi-derived student models to identify optimal performance. Additionally, a thorough evaluation of different distillation techniques was conducted to ascertain the most effective method for model selection. Our findings revealed that the distilled models exhibited comparable performance to the EcoVAD teacher model, indicating a promising approach to overcoming computational barriers for real-time ecological monitoring.
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Fala , Voz , Humanos , Acústica , Biodiversidade , ConhecimentoRESUMO
Bat-pollinated flowers have to attract their pollinators in absence of light and therefore some species developed specialized echoic floral parts. These parts are usually concave shaped and act like acoustic retroreflectors making the flowers acoustically conspicuous to the bats. Acoustic plant specializations only have been described for two bat-pollinated species in the Neotropics and one other bat-dependent plant in South East Asia. However, it remains unclear whether other bat-pollinated plant species also show acoustic adaptations. Moreover, acoustic traits have never been compared between bat-pollinated flowers and flowers belonging to other pollination syndromes. To investigate acoustic traits of bat-pollinated flowers we recorded a dataset of 32320 flower echoes, collected from 168 individual flowers belonging to 12 different species. 6 of these species were pollinated by bats and 6 species were pollinated by insects or hummingbirds. We analyzed the spectral target strength of the flowers and trained a convolutional neural network (CNN) on the spectrograms of the flower echoes. We found that bat-pollinated flowers have a significantly higher echo target strength, independent of their size, and differ in their morphology, specifically in the lower variance of their morphological features. We found that a good classification accuracy by our CNN (up to 84%) can be achieved with only one echo/spectrogram to classify the 12 different plant species, both bat-pollinated and otherwise, with bat-pollinated flowers being easier to classify. The higher classification performance of bat-pollinated flowers can be explained by the lower variance of their morphology.
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Acústica , Quirópteros/fisiologia , Flores , Polinização/fisiologia , Animais , Ecolocação/fisiologia , Flores/classificação , Flores/fisiologia , Redes Neurais de Computação , Espectrografia do SomRESUMO
Evaluating sound similarity is a fundamental building block in acoustic perception and computational analysis. Traditional data-driven analyses of perceptual similarity are based on heuristics or simplified linear models, and are thus limited. Deep learning embeddings, often using triplet networks, have been useful in many fields. However, such networks are usually trained using large class-labelled datasets. Such labels are not always feasible to acquire. We explore data-driven neural embeddings for sound event representation when class labels are absent, instead utilising proxies of perceptual similarity judgements. Ultimately, our target is to create a perceptual embedding space that reflects animals' perception of sound. We create deep perceptual embeddings for bird sounds using triplet models. In order to deal with the challenging nature of triplet loss training with the lack of class-labelled data, we utilise multidimensional scaling (MDS) pretraining, attention pooling, and a triplet mining scheme. We also evaluate the advantage of triplet learning compared to learning a neural embedding from a model trained on MDS alone. Using computational proxies of similarity judgements, we demonstrate the feasibility of the method to develop perceptual models for a wide range of data based on behavioural judgements, helping us understand how animals perceive sounds.
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Som , Animais , HumanosRESUMO
Many people living in urban environments nowadays are overexposed to noise, which results in adverse effects on their health. Thus, urban sound monitoring has emerged as a powerful tool that might enable public administrations to automatically identify and quantify noise pollution. Therefore, identifying multiple and simultaneous acoustic sources in these environments in a reliable and cost-effective way has emerged as a hot research topic. The purpose of this paper is to propose a two-stage classifier able to identify, in real time, a set of up to 21 urban acoustic events that may occur simultaneously (i.e., multilabel), taking advantage of physical redundancy in acoustic sensors from a wireless acoustic sensors network. The first stage of the proposed system consists of a multilabel deep neural network that makes a classification for each 4-s window. The second stage intelligently aggregates the classification results from the first stage of four neighboring nodes to determine the final classification result. Conducted experiments with real-world data and up to three different computing devices show that the system is able to provide classification results in less than 1 s and that it has good performance when classifying the most common events from the dataset. The results of this research may help civic organisations to obtain actionable noise monitoring information from automatic systems.
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Acústica , Ruído , Humanos , Monitorização Fisiológica , Redes Neurais de ComputaçãoRESUMO
Bioacoustics and artificial intelligence facilitate ecological studies of animal populations.
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Inteligência Artificial , Biodiversidade , Extinção Biológica , Animais , Monitoramento Biológico/métodosRESUMO
Animal vocalisations and natural soundscapes are fascinating objects of study, and contain valuable evidence about animal behaviours, populations and ecosystems. They are studied in bioacoustics and ecoacoustics, with signal processing and analysis an important component. Computational bioacoustics has accelerated in recent decades due to the growth of affordable digital sound recording devices, and to huge progress in informatics such as big data, signal processing and machine learning. Methods are inherited from the wider field of deep learning, including speech and image processing. However, the tasks, demands and data characteristics are often different from those addressed in speech or music analysis. There remain unsolved problems, and tasks for which evidence is surely present in many acoustic signals, but not yet realised. In this paper I perform a review of the state of the art in deep learning for computational bioacoustics, aiming to clarify key concepts and identify and analyse knowledge gaps. Based on this, I offer a subjective but principled roadmap for computational bioacoustics with deep learning: topics that the community should aim to address, in order to make the most of future developments in AI and informatics, and to use audio data in answering zoological and ecological questions.
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Acústica , Aprendizado Profundo , Animais , Ecossistema , Processamento de Sinais Assistido por Computador , Vocalização AnimalRESUMO
Solar photovoltaic (PV) is an increasingly significant fraction of electricity generation. Efficient management, and innovations such as short-term forecasting and machine vision, demand high-resolution geographic datasets of PV installations. However, official and public sources have notable deficiencies: spatial imprecision, gaps in coverage and lack of crucial meta data, especially for small-scale solar panel installations. We present the results of a major crowd-sourcing campaign to create open geographic data for over 260,000 solar PV installations across the UK, covering an estimated 86% of the capacity in the country. We focus in particular on capturing small-scale domestic solar PV, which accounts for a significant fraction of generation but was until now very poorly documented. Our dataset suggests nameplate capacities in the UK (as of September 2020) amount to a total of 10.66 GW explicitly mapped, or 13.93 GW when missing capacities are inferred. Our method is applied to the UK but applicable worldwide, and compatible with continual updating to track the rapid growth in PV deployment.
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Recent advances in birdsong detection and classification have approached a limit due to the lack of fully annotated recordings. In this paper, we present NIPS4Bplus, the first richly annotated birdsong audio dataset, that is comprised of recordings containing bird vocalisations along with their active species tags plus the temporal annotations acquired for them. Statistical information about the recordings, their species specific tags and their temporal annotations are presented along with example uses. NIPS4Bplus could be used in various ecoacoustic tasks, such as training models for bird population monitoring, species classification, birdsong vocalisation detection and classification.
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Many animals emit vocal sounds which, independently from the sounds' function, contain some individually distinctive signature. Thus the automatic recognition of individuals by sound is a potentially powerful tool for zoology and ecology research and practical monitoring. Here, we present a general automatic identification method that can work across multiple animal species with various levels of complexity in their communication systems. We further introduce new analysis techniques based on dataset manipulations that can evaluate the robustness and generality of a classifier. By using these techniques, we confirmed the presence of experimental confounds in situations resembling those from past studies. We introduce data manipulations that can reduce the impact of these confounds, compatible with any classifier. We suggest that assessment of confounds should become a standard part of future studies to ensure they do not report over-optimistic results. We provide annotated recordings used for analyses along with this study and we call for dataset sharing to be a common practice to enhance the development of methods and comparisons of results.
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Aves/classificação , Individualidade , Vocalização Animal/classificação , Animais , Masculino , Modelos Biológicos , Especificidade da EspécieRESUMO
Animals in groups often exchange calls, in patterns whose temporal structure may be influenced by contextual factors such as physical location and the social network structure of the group. We introduce a model-based analysis for temporal patterns of animal call timing, originally developed for networks of firing neurons. This has advantages over cross-correlation analysis in that it can correctly handle common-cause confounds and provides a generative model of call patterns with explicit parameters for the influences between individuals. It also has advantages over standard Markovian analysis in that it incorporates detailed temporal interactions which affect timing as well as sequencing of calls. Further, a fitted model can be used to generate novel synthetic call sequences. We apply the method to calls recorded from groups of domesticated zebra finch (Taeniopygia guttata) individuals. We find that the communication network in these groups has stable structure that persists from one day to the next, and that 'kernels' reflecting the temporal range of influence have a characteristic structure for a calling individual's effect on itself, its partner and on others in the group. We further find characteristic patterns of influences by call type as well as by individual.
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Tentilhões/fisiologia , Comportamento Social , Vocalização Animal/fisiologia , Animais , FemininoRESUMO
Automatic species classification of birds from their sound is a computational tool of increasing importance in ecology, conservation monitoring and vocal communication studies. To make classification useful in practice, it is crucial to improve its accuracy while ensuring that it can run at big data scales. Many approaches use acoustic measures based on spectrogram-type data, such as the Mel-frequency cepstral coefficient (MFCC) features which represent a manually-designed summary of spectral information. However, recent work in machine learning has demonstrated that features learnt automatically from data can often outperform manually-designed feature transforms. Feature learning can be performed at large scale and "unsupervised", meaning it requires no manual data labelling, yet it can improve performance on "supervised" tasks such as classification. In this work we introduce a technique for feature learning from large volumes of bird sound recordings, inspired by techniques that have proven useful in other domains. We experimentally compare twelve different feature representations derived from the Mel spectrum (of which six use this technique), using four large and diverse databases of bird vocalisations, classified using a random forest classifier. We demonstrate that in our classification tasks, MFCCs can often lead to worse performance than the raw Mel spectral data from which they are derived. Conversely, we demonstrate that unsupervised feature learning provides a substantial boost over MFCCs and Mel spectra without adding computational complexity after the model has been trained. The boost is particularly notable for single-label classification tasks at large scale. The spectro-temporal activations learned through our procedure resemble spectro-temporal receptive fields calculated from avian primary auditory forebrain. However, for one of our datasets, which contains substantial audio data but few annotations, increased performance is not discernible. We study the interaction between dataset characteristics and choice of feature representation through further empirical analysis.