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1.
Environ Monit Assess ; 196(11): 1085, 2024 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-39433638

RESUMO

Surface waters within the basin of the Laurentian Great Lakes are impacted by microbial contamination from municipal wastewater and agricultural runoff, as well as from other sources. In particular, microbial contamination of drinking water is an ongoing problem within many Indigenous communities located in the basin. However, it is difficult to identify the sources of microbial contamination using the traditional monitoring approaches with fecal indicator bacteria, such as total coliforms and Escherichia coli (E. coli). In this study, we evaluated whether surface waters in the basin are contaminated with fecal bacteria of human origin using chemical indicators of domestic wastewater (i.e., caffeine and sucralose) and with Bacteroidales 16S rRNA markers. Study areas included the Grand River watershed within the Lake Erie basin and three nearshore locations within the Great Lakes basin. Two of these sites are sources of drinking water for Indigenous communities. We assessed whether there were relationships between the concentrations of fecal indicator microorganisms and chemical indicators of domestic wastewater at selected study locations. Analysis of genetic markers indicated that about 30% of the Bacteroidales bacteria present at a site in the Grand River were of human fecal origin and the balance were of bovine or general animal origin. The presence of caffeine and sucralose in surface waters indicated that there was upstream contamination by domestic wastewater. However, in the drinking water treatment plant operated by Six Nations of the Grand River, the levels of these chemical indicators and fecal bacteria were reduced by the advanced water treatment technologies. The concentrations of sucralose and caffeine collectively were strongly correlated with the levels of total coliforms in samples from the Grand River (R2 = 0.75) and with levels of E. coli in samples from the Great Lakes basin (R2 = 0.97), but there appeared to be an upper threshold for this relationship. These data indicate that analysis of caffeine and sucralose and genetic markers for strains of Bacteroidales fecal bacteria may be useful tools for identifying the sources of microbiological contamination of surface waters and drinking water.


Assuntos
Cafeína , Monitoramento Ambiental , Lagos , Sacarose , Águas Residuárias , Poluentes Químicos da Água , Águas Residuárias/microbiologia , Águas Residuárias/química , Sacarose/análise , Sacarose/análogos & derivados , Lagos/microbiologia , Lagos/química , Cafeína/análise , Poluentes Químicos da Água/análise , Fezes/microbiologia , Humanos , Great Lakes Region , Microbiologia da Água
2.
Environ Monit Assess ; 194(8): 564, 2022 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-35788916

RESUMO

Polar organic chemical integrative samplers (POCIS) are widely used to track contaminants in surface waters. However, POCIS have not been used previously to monitor for artificial sweeteners as an indicator of wastewater pollution. In this study, we report for the first time the POCIS sampling rates (Rscal) for four artificial sweetener compounds, acesulfame (0.001 L/day), sucralose (0.114 L/day), cyclamate (0.001 L/day), and saccharin (0.002 L/day). We also prepared a modified POCIS with Strata X-AW anion exchange resin as a sorbent (i.e., ax-POCIS) and determined the sampling rates for sucralose (0.060 L/day) and acesulfame (0.128 L/day). Rscal values were adjusted according to the rate of loss of the performance reference compound, metoprolol-d6 from deployed POCIS to yield field sampling rates (i.e., Rsfield). Field validation of the monitoring method was conducted in Presqu'ile Bay on the north-central coast of Lake Ontario that is impacted by discharges from a sewage lagoon. POCIS were deployed at four sites within the bay and in the lagoon discharge. The four artificial sweeteners, as well as caffeine, ibuprofen, and other microcontaminants of sewage origin, were present throughout the bay at estimated concentrations in the ng/L range, and in the lagoon discharge at estimated concentrations higher by approximately one order of magnitude. Because acesulfame is present in ionic form over the pH range of natural waters, there are uncertainties related to the sampling rates using the standard POCIS. Sucralose is recommended as the best choice for source tracking using POCIS. There was good agreement between the concentrations of sucralose estimated from POCIS and the measured concentrations in grab samples of surface water in the bay. The present study provides key data for monitoring artificial sweeteners using POCIS.


Assuntos
Águas Residuárias , Poluentes Químicos da Água , Calibragem , Monitoramento Ambiental/métodos , Compostos Orgânicos , Esgotos , Edulcorantes , Águas Residuárias/química , Poluentes Químicos da Água/análise
3.
Environ Monit Assess ; 194(3): 225, 2022 Feb 26.
Artigo em Inglês | MEDLINE | ID: mdl-35217908

RESUMO

The Sustainable Development Goal 6 calls for global progress by 2030 in treating domestic wastewater and providing access to adequate sanitation facilities. However, meeting these goals will be a challenge for most Small Island Developing States, including Caribbean island nations. In the nearshore zone of the Soufriere region on the Caribbean island of St. Lucia, there is a history of high levels of bacteria of fecal origin. Possible land-based sources of microbial contamination in the Soufriere Bay include discharges from the Soufriere River and transport of wastewater, including fecal material from the town of Soufriere. This area is an important tourist destination and supports a local fishery. To identify the sources of microbial contamination in Soufriere Bay, a range of monitoring methods were employed in this study. In grab samples of surface water collected from the Soufriere River, counts of total coliforms and Escherichia coli were elevated above water quality guidelines. However, the spikes in concentrations of these indicator organisms in the river did not necessarily coincide with the spikes in the levels of total coliforms and E. coli detected in samples collected on the same dates in Soufriere Bay, indicating that there are other sources of pollution in the Bay besides discharges from the river. Monitoring for chemical indicators of wastewater (i.e., caffeine, sucralose, fluconazole) in the Soufriere River indicated that there are inputs of sewage or human fecal material throughout the watershed. However, analysis of Bacteroidales 16S rRNA genetic markers for fecal bacteria originating from humans, bovine ruminants, or other warm-blooded animals indicated that the majority of microbial contamination in the river was not from humans. Monitoring for chemical indicators of wastewater using passive samplers deployed in Soufriere Bay indicated that there are two "hot spots" of contamination located offshore of economically depressed areas of the town of Soufriere. This study indicates that efforts to control contamination of Soufriere Bay by fecal microorganisms must include management of pollution originating from both sewage and domestic animals in the watershed.


Assuntos
Monitoramento Ambiental , Escherichia coli , Animais , Bovinos , Monitoramento Ambiental/métodos , Escherichia coli/genética , Fezes/microbiologia , Humanos , RNA Ribossômico 16S/genética , Rios/química , Santa Lúcia , Microbiologia da Água , Poluição da Água/análise
4.
Bull Environ Contam Toxicol ; 104(1): 21-26, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-31811320

RESUMO

Polar Organic Chemical Integrative Samplers (POCIS) were deployed in two watersheds in Córdoba province and one watershed in Buenos Aires province in Argentina. The fungicides, tebuconazole, carbendazim and azoxystrobin, and the herbicides, atrazine, dicamba and 2,4-D were detected in POCIS deployed in each of the three watersheds. Estimated time weighted average concentrations of atrazine were greater than 2 µg/L at the outflow of Brava Lake in Buenos Aires province, and this concentration exceeds the Canadian water quality guideline for protection of aquatic life. The concentrations of all other pesticides were less than 400 ng/L. The distribution of pesticides detected in surface waters indicated that the sources were runoff from agricultural and urban lands and discharges from wastewater treatment plants.


Assuntos
Monitoramento Ambiental/métodos , Água Doce/química , Fungicidas Industriais/análise , Praguicidas/análise , Poluentes Químicos da Água/análise , Agricultura , Argentina , Monitoramento Ambiental/instrumentação , Lagos/química , Metanol/química , Rios/química , Urbanização , Águas Residuárias/química
5.
Environ Monit Assess ; 190(9): 555, 2018 Aug 28.
Artigo em Inglês | MEDLINE | ID: mdl-30151718

RESUMO

Because of the widespread use of silver nanoparticles in commercial products, discharges of municipal wastewater may be a point source of silver in the aquatic environment. We monitored two sites in western Lake Ontario impacted by discharges from wastewater treatment plants serving the City of Toronto. Concentrations of silver were elevated in bottom sediments and suspended sediments collected at the two sites. We also deployed two types of passive samplers in the water column at the two sites, the newly developed Carbon Nanotube Integrative Samplers for monitoring "CNIS-labile" silver and Diffusive Gradient in Thin Film samplers for monitoring "DGT-labile" silver. Results from these passive samplers indicated that the concentrations of silver at the two sites were either below detection limits or were in the ng/L range. In laboratory experiments where the sediments were re-suspended in Milli-Q water, a small proportion of the silver (i.e., < 25%) was labile and partitioned as colloidal or dissolved silver into the liquid phase after agitation. Nanoparticles tentatively identified as silver nanoparticles were detected by single-particle ICP-MS in suspension after agitation of both suspended and bottom sediments. Therefore, there is a need to assess whether silver species, including silver nanoparticles are transported from wastewater treatment plants into sediments in the aquatic environment. This study is unique in focusing on the in situ distribution of silver in natural waters and in sediments that are potentially impacted by urban sources of nanoparticles.


Assuntos
Sedimentos Geológicos/química , Lagos/química , Nanopartículas Metálicas/análise , Prata/análise , Eliminação de Resíduos Líquidos/métodos , Águas Residuárias/química , Poluentes Químicos da Água/análise , Cidades , Monitoramento Ambiental/métodos , Governo Local , Nanotubos de Carbono , Ontário
6.
Bull Environ Contam Toxicol ; 100(1): 106-111, 2018 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-29230481

RESUMO

To determine whether discharges of contaminants from municipal wastewater treatment plants (WWTPs) may be contributing to the decline in populations of brook trout (Salvelinus fontinalis) in the watershed of the Credit River in ON, Canada, we caged juvenile brook trout upstream and downstream of the WWTPs of the small communities of Acton and Orangeville. Levels of vitellogenin were significantly elevated in liver tissue of trout caged downstream of both WWTPs, indicating exposure to estrogenic substances. Levels of thiobarbituric acid reactive substances indicative of oxidation of lipids were elevated in the gill tissue of brook trout caged downstream of the Orangeville WWTP, and levels of total glutathione were significantly lower in the gills of brook trout caged downstream of the Acton WWTP. Both biomarkers are indicative of oxidative stress, although many constituents of wastewater could be responsible for these responses. More work is needed to determine whether discharges of wastewater are contributing to the decline of brook trout in the Credit River and other cold-water streams in the Lake Ontario catchment basin.


Assuntos
Monitoramento Ambiental/métodos , Truta/fisiologia , Eliminação de Resíduos Líquidos , Águas Residuárias/toxicidade , Poluentes da Água/toxicidade , Animais , Brânquias , Ontário , Rios , Vitelogeninas , Águas Residuárias/análise , Poluentes da Água/análise
7.
Bull Environ Contam Toxicol ; 101(1): 1-6, 2018 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-29721596

RESUMO

There have been few reports in the peer-reviewed literature on the levels of contaminants of emerging concern (CECs) in municipal wastewater from the Caribbean region. In this study of wastewater collected from two wastewater treatment plants in Barbados, caffeine and ibuprofen were detected at µg/L concentrations, whereas two steroid hormones (i.e. androstenedione, estrone) and several prescription pharmaceuticals were detected at ng/L concentrations. Among drugs of abuse, benzoylecgonine (i.e. metabolite of cocaine), MDMA (i.e. Ecstasy) and MDA (i.e. 3,4-methylenedioxyamphetamine) were present at the highest concentrations in untreated wastewater. Overall, these data show that there is potential impact in the marine environment in Barbados from CECs discharged into the coastal zone.


Assuntos
Monitoramento Ambiental , Águas Residuárias/química , Poluentes Químicos da Água/análise , 3,4-Metilenodioxianfetamina/análise , Androstenodiona/análise , Barbados , Cafeína/análise , Cromatografia Líquida , Cocaína/análogos & derivados , Cocaína/análise , Estrona/análise , Ibuprofeno/análise , N-Metil-3,4-Metilenodioxianfetamina/análise , Espectrometria de Massas em Tandem
8.
BMC Complement Altern Med ; 17(1): 171, 2017 Mar 27.
Artigo em Inglês | MEDLINE | ID: mdl-28347309

RESUMO

BACKGROUND: Consumption of vegetables has been proven to be effective in the prevention of different diseases. Traditionally edible aerial part of Pisum sativum L. subsp. sativum (Fabaceae) is used to treat diabetes, heart diseases and as blood purifier. Present study was aimed to explore the traditional use of aerial parts of P. sativum as a source of antidiabetic agent. In addition, antioxidant activity and chemical composition was carried out. METHODS: Total polyphenol content was spectrophotometrically determined using Folin Chiocalteu's reagent while the flavonoids by aluminum chloride colorimetric assay. Identification of compounds of the extract was made through HPLC and LCMS. Antihyperglycemic activity was assessed by oral glucose tolerance test in mice. Antioxidant activity was determined by DPPH free radical scavenging and reducing power assay. RESULTS: Total polyphenol and total flavonoids content were found to be 51.23 mg gallic acid equivalent and 30.88 mg quercetin equivalent per gram of dried plant extract respectively. Ellagic acid and p-coumeric acid were detected through HPLC. A total of eight compounds including naringenin, ß-sitosterol were indentified through LCMS. In OGTT, extract (200 mg/kg bw) showed a 30.24% decrease (P< 0.05) in blood glucose levels at 30 min compared to the normal control. The extract showed IC50 value of 158.52 µg/mL in DPPH scavenging assay and also showed comparable reducing power. CONCLUSION: Along with other compounds ellagic acid and ß-sitosterol present in the extract may be responsible for its antioxidant as well as antihyperglycemic activities. Altogether these results rationalize the use of this vegetable in traditional medicine.


Assuntos
Hiperglicemia/tratamento farmacológico , Hipoglicemiantes/administração & dosagem , Hipoglicemiantes/química , Pisum sativum/química , Extratos Vegetais/administração & dosagem , Extratos Vegetais/química , Animais , Antioxidantes/administração & dosagem , Antioxidantes/química , Antioxidantes/isolamento & purificação , Glucose/metabolismo , Humanos , Hiperglicemia/metabolismo , Hipoglicemiantes/isolamento & purificação , Camundongos , Extratos Vegetais/isolamento & purificação , Polifenóis/administração & dosagem , Polifenóis/química , Polifenóis/isolamento & purificação
9.
Environ Monit Assess ; 189(12): 636, 2017 Nov 14.
Artigo em Inglês | MEDLINE | ID: mdl-29138943

RESUMO

Contaminants of emerging concern (CECs), including pharmaceuticals, artificial sweeteners, steroid hormones, and current-use pesticides have been detected in surface waters around the world, but to date, there have been no reports in the peer-reviewed literature on the levels of these classes of contaminants in freshwater resources in the Caribbean region. In the present study, multi-residue solid phase extraction (SPE) and liquid chromatography with tandem mass spectroscopy (LC-MS/MS) were used to analyze grab samples of surface waters collected from five different watersheds in Barbados, West Indies. The artificial sweeteners (AS), acesulfame, cyclamate, saccharin, and sucralose were widely detected in the watersheds, indicating contamination from domestic wastewater, and the concentrations of these chemical tracers in water were correlated with the concentrations of the non-prescription pharmaceutical, ibuprofen (R 2 values of 0.4-0.6). Surprisingly, the concentrations of another chemical tracer of domestic wastewater, caffeine were not correlated with ibuprofen or AS concentrations. Several other prescription pharmaceuticals and the steroid hormones, estrone and androstenedione, were detected in selected watersheds at low ng/L concentrations. The fungicide, chlorothalonil was widely detected in surface waters at low (< 10 ng/L) concentrations, but the levels of this pesticide were not correlated with the concentrations of the other target analytes, indicating that the source of this pesticide is not domestic wastewater. An informal survey of disposal practices for out of date or unused drugs by pharmacies in Barbados indicated that disposal into trash destined for the landfill and flushing down the sink might be significant sources of contamination of water resources by pharmaceuticals.


Assuntos
Monitoramento Ambiental , Poluentes Químicos da Água/análise , Poluição Química da Água/estatística & dados numéricos , Barbados , Região do Caribe , Água Doce/química , Preparações Farmacêuticas , Extração em Fase Sólida/métodos , Edulcorantes/química , Espectrometria de Massas em Tandem , Águas Residuárias/química , Índias Ocidentais
10.
Environ Monit Assess ; 189(1): 1, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27909849

RESUMO

The Lake Simcoe watershed in Ontario, Canada is an important recreational area and a recharge zone for groundwater resources. Lake Simcoe is a relatively shallow lotic system that has been impacted by urban development, recreation, industry and agriculture. As part of a watershed management plan, six wastewater treatment plants (WWTPs) located in this catchment basin were selected to measure the inputs of contaminants of emerging concern (CECs) of wastewater origin. These WWTPs were recently upgraded to tertiary treatment for phosphorus removal. Polar organic chemical integrative samplers (POCIS) and semipermeable membrane devices (SPMDs) were used to monitor for hydrophilic and hydrophobic CECs, respectively, in treated and untreated wastewater. The passive samplers were calibrated with performance reference compounds (PRCs) by measuring the loss of deuterated beta blocker drugs spiked into POCIS and the loss of PCB congeners spiked into SPMDs over the course of 14-day deployment periods. From the PRC data, field sampling rates of CECs were determined and applied to estimate time-weighted average (TWA) concentrations and mass loadings in mg/day/1000 members of the population serviced. In treated wastewater, TWA concentrations of an antibiotic, sulfamethoxazole, the prescription drugs, carbamazepine, naproxen and gemfibrozil, and the non-prescription drug, ibuprofen, were estimated to be in the low (<18 ng/L) range. The artificial sweeteners, sucralose and acesulfame, were particularly useful chemical tracers, with estimated TWA concentrations in treated wastewater ranging from 128 to 213 ng/L and 4 to 33 ng/L, respectively. The steroid hormones were detected only rarely in treated wastewater. Triclosan, triclocarban and the synthetic musks, HHCB and AHTN, were removed efficiently (>77 %), possibly because of the tertiary treatment technologies. Therefore, the mass loadings for these personal care products were all <5 mg/day/1000 people. Overall, this study indicates that tertiary treatment technologies designed for phosphorus removal do not entirely remove the target CECs.


Assuntos
Monitoramento Ambiental/métodos , Águas Residuárias/química , Poluentes Químicos da Água/análise , Agricultura , Ontário , Compostos Orgânicos/análise , Padrões de Referência , Triclosan/análise
11.
Mol Genet Metab ; 115(2-3): 72-7, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25990862

RESUMO

While phenylalanine (PHE) is the toxic insult in phenylketonuria (PKU), mechanisms underlying PHE toxicity remain ill-defined. Altered DNA methylation in response to toxic exposures is well-recognized. DNA methylation patterns were assessed in blood and brain from PKU patients to determine if PHE toxicity impacts methylation. Methylome assessment, utilizing methylated DNA immunoprecipitation and paired-end sequencing, was performed in DNA obtained from brain tissue of classical PKU patients, leukocytes from poorly controlled PKU patients, leukocytes from well controlled PKU patients, and appropriate control tissues. In PKU brain tissue, expression analysis determined the impact of methylation on gene function. Differential methylation was observed in brain tissue of PKU patients and expression studies identified downstream impact on gene expression. Altered patterns of methylation were observed in leukocytes of well controlled and poorly controlled patients with more extensive methylation in patients with high PHE exposure. Differential methylation of noncoding RNA genes was extensive in patients with high PHE exposure but minimal in well controlled patients. Methylome repatterning leading to altered gene expression was present in brain tissue of PKU patients, suggesting a role in neuropathology. Aberrant methylation is observed in leukocytes of PKU patients and is influenced by PHE exposure. DNA methylation may provide a biomarker relating to historic PHE exposure.


Assuntos
Encefalopatias/metabolismo , Metilação de DNA , Fenilalanina Hidroxilase/genética , Fenilcetonúrias/metabolismo , Idoso , Feminino , Lobo Frontal/metabolismo , Lobo Frontal/patologia , Humanos , Leucócitos , Pessoa de Meia-Idade , Fenilalanina/sangue
12.
J Biomed Mater Res B Appl Biomater ; 112(1): e35325, 2024 01.
Artigo em Inglês | MEDLINE | ID: mdl-37675952

RESUMO

The present study has attempted to evaluate the endothelialization and smooth muscle regeneration efficiency of a novel dual-layer small-diameter vascular graft. Two types of layers (PCL-mPEG-VEGF and PCL-Chitosan-PDGF) were fabricated to find out the best layer giving endothelialization support for the lumen and unique contractile function for outer layer of blood vessels. Platelet-derived growth factor (PDGF) and chitosan were immobilized onto PCL surface by aminolysis-based surface modification technique. Besides, Poly (ethylene glycol) methyl ether (mPEG) and vascular endothelial growth factor (VEGF) were directly blended with PCL. Morphological analysis of membranes ensured consistency of average fibers diameter with native extracellular matrix. A favorable interaction of PCL-mPEG-VEGF with cow pulmonary endothelial cells (CPAEs) and PCL-Chitosan-PDGF with rat bone marrow mesenchymal stem cells (RBMSCs) was obtained during in vitro study. Controlled growth factor release patterns were found from both layers. Further, PCL-mPEG-VEGF exhibited endothelial markers expression properties from RBMSCs. Up-regulation of SMCs markers expression was significantly ensured by the PCL-Chitosan-PDGF membrane. Thus, PCL-mPEG-VEGF and PCL-Chitosan-PDGF were preferred as inner and outer layers respectively of a finally prepared tubular hybrid tissue engineered small diameter vascular graft. Finally, the dual-layer vascular graft was implanted onto a rat abdominal aorta model for 2 months. The extracted samples exhibited the presence of endothelial marker (ICAM 1) in the inner layer and smooth muscle cell marker (αSMA) in the outer layer as well as substantial amount of collagen deposition was observed in the both layers.


Assuntos
Quitosana , Polietilenoglicóis , Fator A de Crescimento do Endotélio Vascular , Feminino , Bovinos , Ratos , Animais , Fator A de Crescimento do Endotélio Vascular/metabolismo , Quitosana/farmacologia , Quitosana/química , Fator de Crescimento Derivado de Plaquetas/farmacologia , Células Endoteliais/metabolismo , Prótese Vascular , Poliésteres/química
13.
Biochem Biophys Rep ; 38: 101703, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38596408

RESUMO

The urea transporter UT-B1, encoded by the SLC14A1 gene, has been hypothesized to be a significant protein whose deficiency and dysfunction contribute to the pathogenesis of bladder cancer and many other diseases. Several studies reported the association of genetic alterations in the SLC14A1 (UT-B1) gene with bladder carcinogenesis, suggesting a need for thorough characterization of the UT-B1 protein's coding and non-coding variants. This study used various computational techniques to investigate the commonly occurring germ-line missense and non-coding SNPs (ncSNPs) of the SLC14A1 gene (UT-B1) for their structural, functional, and molecular implications for disease susceptibility and dysfunctionality. SLC14A1 missense variants, primarily identified from the ENSEMBL genome browser, were screened through twelve functionality prediction tools leading to two variants D280Y (predicted detrimental by maximum tools) and D280N (high global MAF) for rs1058396. Subsequently, the ConSurf and NetSurf tools revealed the D280 residue to be in a variable site and exposed on the protein surface. According to I-Mutant2.0 and MUpro, both variants are predicted to cause a significant effect on protein stability. Analysis of molecular docking anticipated these two variants to decrease the binding affinity of UT-B1 protein for the examined ligands to a significant extent. Molecular dynamics also disclosed the possible destabilization of the UT-B1 protein due to single nucleotide polymorphism compared to wild-type protein which may result in impaired protein function. Furthermore, several non-coding SNPs were estimated to affect transcription factor binding and regulation of SLC14A1 gene expression. Additionally, two ncSNPs were found to affect miRNA-based post-transcriptional regulation by creating new seed regions for miRNA binding. This comprehensive in-silico study of SLC14A1 gene variants may serve as a springboard for future large-scale investigations examining SLC14A1 polymorphisms.

14.
Sci Rep ; 14(1): 368, 2024 01 03.
Artigo em Inglês | MEDLINE | ID: mdl-38172584

RESUMO

Being a frequent malignant tumor of the genitourinary system, Bladder Urothelial Carcinoma (BLCA) has a poor prognosis. This study focused on identifying and validating prognostic biomarkers utilizing methylation, transcriptomics, and clinical data from The Cancer Genome Atlas Bladder Urothelial Carcinoma (TCGA BLCA) cohort. The impact of altered differentially methylated hallmark pathway genes was subjected to clustering analysis to observe changes in the transcriptional landscape on BLCA patients and identify two subtypes of patients from the TCGA BLCA population where Subtype 2 was associated with the worst prognosis with a p-value of 0.00032. Differential expression and enrichment analysis showed that subtype 2 was enriched in immune-responsive and cancer-progressive pathways, whereas subtype 1 was enriched in biosynthetic pathways. Following, regression and network analyses revealed Epidermal Growth Factor Receptor (EGFR), Fos-related antigen 1 (FOSL1), Nuclear Factor Erythroid 2 (NFE2), ADP-ribosylation factor-like protein 4D (ARL4D), SH3 domain containing ring finger 2 (SH3RF2), and Cadherin 3 (CDH3) genes to be the most significant prognostic gene markers. These genes were used to construct a risk model that separated the BLCA patients into high and low-risk groups. The risk model was also validated in an external dataset by performing survival analysis between high and low-risk groups with a p-value < 0.001 and the result showed the high group was significantly associated with poor prognosis compared to the low group. Single-cell analyses revealed the elevated level of these genes in the tumor microenvironment and associated with immune response. High-grade patients also tend to have a high expression of these genes compared to low-grade patients. In conclusion, this research developed a six-gene signature that is pertinent to the prediction of overall survival (OS) and might contribute to the advancement of precision medicine in the management of bladder cancer.


Assuntos
Carcinoma de Células de Transição , Neoplasias da Bexiga Urinária , Humanos , Neoplasias da Bexiga Urinária/genética , Prognóstico , Perfilação da Expressão Gênica , Metilação , Microambiente Tumoral , Proteínas de Transporte , Proteínas Oncogênicas
15.
PLoS One ; 19(1): e0296361, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38165846

RESUMO

Genome-wide association studies (GWAS) identified a coding single nucleotide polymorphism, MYNN rs10936599, at chromosome 3q. MYNN gene encodes myoneurin protein, which has been associated with several cancer pathogenesis and disease development processes. However, there needed to be a more detailed characterization of this polymorphism's (and other coding and non-coding polymorphisms) structural, functional, and molecular impact. The current study addressed this gap and analyzed different properties of rs10936599 and non-coding SNPs of MYNN via a thorough computational method. The variant, rs10936599, was predicted functionally deleterious by nine functionality prediction approaches, like SIFT, PolyPhen-2, and REVEL, etc. Following that, structural modifications were estimated through the HOPE server and Mutation3D. Moreover, the mutation was found in a conserved and active residue, according to ConSurf and CPORT. Further, the secondary structures were predicted, followed by tertiary structures, and there was a significant deviation between the native and variant models. Similarly, molecular simulation also showed considerable differences in the dynamic pattern of the wildtype and mutant structures. Molecular docking revealed that the variant binds with better docking scores with ligand NOTCH2. In addition to that, non-coding SNPs located at the MYNN locus were retrieved from the ENSEMBL database. These were found to disrupt the transcription factor binding regulatory regions; nonetheless, only two affect miRNA target sites. Again, eight non-coding variants were detected in the testes with normalized expression, whereas HaploReg v4.1 unveiled annotations for non-coding variants. In summary, in silico comprehensive characterization of coding and non-coding single nucleotide polymorphisms of MYNN gene will assist researchers to work on MYNN gene and establish their association with certain types of cancers.


Assuntos
Proteínas de Ligação a DNA , Polimorfismo de Nucleotídeo Único , Fatores de Transcrição , Estudo de Associação Genômica Ampla , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Mutação , Humanos , Proteínas de Ligação a DNA/genética , Fatores de Transcrição/genética
16.
Heliyon ; 10(10): e31286, 2024 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-38803860

RESUMO

Bladder carcinoma (BLCA) is a widespread urological malignancy causing significant global mortality, often hindered by delayed diagnosis and limited treatments. BLCA frequently exhibits TP53 mutations, playing a pivotal role in its pathogenesis and underscoring the potential of targeting TP53 as a therapeutic approach for this prevalent urological malignancy. Tumor tissues from 50 bladder cancer patients were used for mutational analysis in TP53's mutation-rich exons (5, 7, & 8). The gene expression of the TP53 gene, along with a TP53-target gene B-cell translocation gene 2 (BTG2) was also assessed in the cDNA samples from the same BLCA tissues and 15 urine controls of healthy people. The analysis revealed 22 % of patients with somatic hotspot mutations, 18 % with pathogenic missense mutations, and 12 % with intronic variants. Patients with somatic mutations exhibited the worst prognosis, supported by survival analysis from The Cancer Genome Atlas (TCGA) BLCA data. Interestingly, H296Y missense mutation correlated with higher TP53 expression and improved survival, while intronic SNPs were linked to worse outcomes. Additionally, upregulated BTG2 expression in mutated patients was observed which was correlated with poor prognosis, emphasizing the role of TP53 mutations in bladder cancer progression. The multivariate analysis highlighted the predictive power of TP53 mutations, with a high frequency of high-grade tumors (78.57 %) in mutated patients, underscoring their role in cancer progression. In conclusion, this study emphasizes the crucial role of TP53 mutations in bladder cancer patients from Bangladesh.

17.
Chemosphere ; 296: 133960, 2022 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-35167832

RESUMO

Clothianidin, a neonicotinoid insecticide that binds to arthropod nicotinic acetylcholine receptors, is widely used to protect plants against a wide variety of agricultural pests. Little is known about how this insecticide affects non-target invertebrate species in aquatic environments. In this study, we explored the effects of aqueous exposures of clothianidin on locomotion, chemosensory-based responses, and agonistic encounters of rusty crayfish (Faxonius rusticus). Clothianidin exposures at a concentration of 1.0 µg/L (i.e., 1.0 ppb) did not alter initiations and retreats, but did increase the amount of time the crayfish interacted per interaction. In a subsequent food cue experiment with crayfish exposed to clothianidin concentrations of 0.4 µg/L and 1.0 µg/L, the test organisms demonstrated chemosensory dysfunction, but no decrease in locomotory movement. As chemosensation is essential for recognizing previous rivals in crayfish, the loss of this sense likely resulted in the exposed crayfish being unable to detect cues used to recognize a previous competitor. An inability to recognize a previous competitor (and who won or lost the previous interaction) could result in crayfish spending more time fighting and less time on foraging and reproduction. This study demonstrates that exposures of crayfish to clothianidin at concentrations found in the environment affects the behavioural ecology of these aquatic invertebrates.


Assuntos
Inseticidas , Poluentes Químicos da Água , Animais , Astacoidea , Guanidinas , Inseticidas/toxicidade , Neonicotinoides/toxicidade , Tiazóis , Poluentes Químicos da Água/toxicidade
18.
J Biomater Sci Polym Ed ; 33(4): 499-516, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-34644247

RESUMO

Excessive blood loss due to trauma or major surgical intervention can be life threatening which necessitates rapid hemorrhage management for the prevention of such bleeding related sufferings. Broad interest in developing new hemostatic technologies have been paid for bleeding control but none of them found completely satisfactory especially in terms of rapid clotting, absorbability, porosity, cost effectiveness and safety. To address these issues, a combination of active and passive hemostatic materials from biological sources could be a wise choice. Therefore, plant-derived TEMPO-oxidized nanocellulose (TOCN)/biopolymer gelatin (G) sponge was successfully prepared in co-operation with intrinsic blood coagulation enzyme thrombin (Th) via freeze drying method and their application as rapid hemostatic dressing was investigated. Morphological and in vitro characteristics of the samples were evaluated where uniformity, porosity, swelling, degradation behavior had direct relationship with the percent gelatin incorporation. In vitro hemocompatibility and cyto-compatibility of these sponges were confirmed as well. Among the samples, TOCN 2.5G-Th sponge exhibited excellent hemostatic effect, rapid absorbability, minimum clotting time (1.37 ± 0.152 min) and reduction of blood loss was ensured through rat liver punch biopsy model. The results demonstrated that, Th enhanced blood coagulation, platelet and red blood cell aggregation following application of biopolymer TOCN 2.5G-Th sponge compared with samples devoid of Th. In short, the functional, cost effective and nontoxic sponge developed via facile preparation could potentially be used as an absorbable biomaterial to achieve immediate hemostasis. HighlightsPlant-derived TEMPO-oxidized nanocellulose (TOCN) and biopolymer gelatin (G) was successfully used to prepare a hemostatic sponge in combination with intrinsic blood coagulation enzyme thrombin (Th).The TG sponge combines the advantages of TOCN and gelatin, exhibiting biocompatibility, biodegradability and superior blood-absorption performance.The TOCN 2.5G-Th sponge improves plasma absorption, red blood cell adhesion, aggregation, platelet adhesion and activation leading to enhanced hemostasis effect and shorter hemostasis time in vitro and in vivo.


Assuntos
Celulose Oxidada , Hemostáticos , Nanofibras , Animais , Óxidos N-Cíclicos , Gelatina/farmacologia , Hemorragia , Hemostasia , Hemostáticos/farmacologia , Fígado , Ratos , Trombina/farmacologia
19.
Biomed Mater ; 17(5)2022 08 24.
Artigo em Inglês | MEDLINE | ID: mdl-35952638

RESUMO

Guided bone regeneration with osteoinductive scaffolds is a competitive edge of tissue engineering due to faster and more consistent healing. In the present study, we developed such composite beads with nanocellulose reinforced alginate hydrogel that carriedß-tricalcium phosphate (ß-TCP) nano-powder and liver-derived extracellular matrix (ECM) from porcine. Interestingly, it was observed that the beads' group containing ECM-ß-TCP-alginate-nanocellulose (ETAC) was more cytocompatible than the others comprised ofß-TCP-alginate-nanocellulose (TAC) and alginate-nanocellulose (AC). Cell attachment on ETAC beads was dramatically increased with time. In parallel within vitroresults, ETAC beads produced uniform cortical and cancellous bone in the femur defect model of rabbits within 2 months. Although the group TAC also produced noticeable bone in the defect site, the healing quality was improved and regeneration was faster after adding ECM. This conclusion was not only confirmed by micro-anatomical analysis but also demonstrated with x-ray microtomography. In addition, the characteristic moldable and injectable properties made ETAC a promising scaffold for clinical applications.


Assuntos
Alginatos , Fosfatos de Cálcio , Animais , Regeneração Óssea , Matriz Extracelular , Fígado , Coelhos , Suínos , Engenharia Tecidual/métodos , Alicerces Teciduais
20.
Protein Expr Purif ; 78(2): 216-24, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21575725

RESUMO

Immobilized metal affinity chromatography (IMAC) is a widely used purification tool for the production of active, soluble recombinant proteins. Escherichia coli proteins that routinely contaminate IMAC purifications have been characterized to date. The work presented here narrows that focus to the most problematic host proteins, those retaining nickel affinity under elevated imidazole conditions, using a single bind-and-elute step. Two-dimensional difference gel electrophoresis, a favored technique for resolving complex protein mixtures and evaluating their expression, here discerns variation in the soluble extract pools that are loaded in IMAC and the remaining contaminants with respect to varied levels of recombinant protein expression. Peptidyl-prolyl isomerase SlyD and catabolite activator protein (CAP) are here shown to be the most persistent contaminants and have greater prevalence at low target protein expression.


Assuntos
Biotecnologia/normas , Cromatografia de Afinidade/métodos , Eletroforese em Gel Bidimensional/métodos , Proteínas de Escherichia coli/análise , Imidazóis/química , Proteínas Recombinantes/normas , Proteína Receptora de AMP Cíclico/análise , Proteína Receptora de AMP Cíclico/química , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/metabolismo , Níquel/metabolismo , Peptidilprolil Isomerase/análise , Peptidilprolil Isomerase/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
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