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1.
Biochim Biophys Acta Proteins Proteom ; 1866(4): 507-518, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29325872

RESUMO

Bile Salt Hydrolase (BSH), a member of Cholylglycine hydrolase family, catalyzes the de-conjugation of bile acids and is evolutionarily related to penicillin V acylase (PVA) that hydrolyses a different substrate such as penicillin V. We report the three-dimensional structure of a BSH enzyme from the Gram-positive bacteria Enterococcus faecalis (EfBSH) which has manifold higher hydrolase activity compared to other known BSHs and displays unique allosteric catalytic property. The structural analysis revealed reduced secondary structure content compared to other known BSH structures, particularly devoid of an anti-parallel ß-sheet in the assembly loop and part of a ß-strand is converted to increase the length of a substrate binding loop 2. The analysis of the substrate binding pocket showed reduced volume owing to altered loop conformations and increased hydrophobicity contributed by a higher ratio of hydrophobic to hydrophilic groups present. The aromatic residues F18, Y20 and F65 participate in substrate binding. Thus, their mutation affects enzyme activity. Docking and Molecular Dynamics simulation studies showed effective polar complementarity present for the three hydroxyl (-OH) groups of GCA substrate in the binding site contributing to higher substrate specificity and efficient catalysis. These are unique features characteristics of this BSH enzyme and thought to contribute to its higher activity and specificity towards bile salts as well as allosteric effects. Further, mechanism of autocatalytic processing of Cholylglycine Hydrolases by the excision of an N-terminal Pre-peptide was examined by inserting different N-terminal pre-peptides in EfBSH sequence. The results suggest that two serine residues next to nucleophile cysteine are essential for autocalytic processing to remove precursor peptide. Since pre-peptide is absent in EfBSH the mutation of these serines is tolerated. This suggests that an evolution-mediated subordination of the pre-peptide excision site resulted in loss of pre-peptide in EfBSH and other related Cholylglycine hydrolases.


Assuntos
Amidoidrolases , Proteínas de Bactérias , Enterococcus faecalis , Simulação de Dinâmica Molecular , Processamento de Proteína Pós-Traducional , Proteólise , Amidoidrolases/química , Amidoidrolases/genética , Amidoidrolases/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Catálise , Enterococcus faecalis/enzimologia , Enterococcus faecalis/genética , Estrutura Secundária de Proteína , Especificidade por Substrato
2.
Planta ; 241(5): 1061-73, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25559942

RESUMO

MAIN CONCLUSION: Crystal structure of a reported PA2 albumin from Cicer arietinum shows that it belongs to hemopexin fold family, has four beta-propeller motifs and possesses hemagglutination activity, making it different from known legume lectins. A plant albumin (PA2) from Cicer arietinum, presumably a lectin (CAL) owing to its hemagglutination activity which is inhibited by complex sugars as well as glycoproteins such as fetuin, desialylated fetuin and fibrinogen. The three-dimensional structure of this homodimeric protein has been determined using X-ray crystallography at 2.2 Å in two crystal forms: orthorhombic (P21212) and trigonal (P3). The structure determined using molecular replacement method and refined in orthorhombic crystal form reached R-factors R free 22.6 % and R work 18.2 % and in trigonal form had 22.3 and 17.9 % in the resolution range of 20.0-2.2 and 35.3-2.2 Å, respectively. Interestingly, unlike the known legume lectin fold, the structure of this homodimeric hemagglutinin belonged to hemopexin fold that consisted of four-bladed ß-propeller architecture. Each subunit has a central cavity forming a channel, inside of which is lined with hydrophobic residues. The channel also bears binding sites for ligands such as calcium, sodium and chloride ions, iodine atom in the case of iodine derivative and water molecules. However, none of these ligands seem important for the sugar recognition. No monosaccharide sugar specificity could be detected using hemagglutination inhibition. Chemical modification studies identified a potential sugar-binding site per subunit molecule. Comparison of C-alpha atom positions in subunit structures showed that the deviations between the two crystal forms were more with respect to blades I and IV. Differences also existed between subunits in two forms in terms of type and site of ligand binding.


Assuntos
Albuminas/química , Cicer/química , Hemaglutinação , Hemopexina/química , Sequência de Aminoácidos , Cristalografia por Raios X , Dados de Sequência Molecular , Dobramento de Proteína , Homologia de Sequência de Aminoácidos
3.
J Ind Microbiol Biotechnol ; 42(11): 1493-506, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26419382

RESUMO

Penicillin acylases are enzymes employed by the pharmaceutical industry for the manufacture of semi-synthetic penicillins. There is a continuous demand for thermostable and alkalophilic enzymes in such applications. We have carried out a computational analysis of known penicillin G acylases (PGAs) in terms of their thermostable nature using various protein-stabilizing factors. While the presence of disulfide bridges was considered initially to screen putative thermostable PGAs from the database, various other factors such as high arginine to lysine ratio, less content of thermolabile amino acids, presence of proline in ß-turns, more number of ion-pair and other non-bonded interactions were also considered for comparison. A modified consensus approach designed could further identify stabilizing residue positions by site-specific comparison between mesostable and thermostable PGAs. A most likely thermostable enzyme identified from the analysis was PGA from Paracoccus denitrificans (PdPGA). This was cloned, expressed and tested for its thermostable nature using biochemical and biophysical experiments. The consensus site-specific sequence-based approach predicted PdPGA to be more thermostable than Escherichia coli PGA, but not as thermostable as the PGA from Achromobacter xylosoxidans. Experimental data showed that PdPGA was comparatively less thermostable than Achromobacter xylosoxidans PGA, although thermostability factors favored a much higher stability. Despite being mesostable, PdPGA being active and stable at alkaline pH is an advantage. Finally, several residue positions could be identified in PdPGA, which upon mutation selectively could improve the thermostability of the enzyme.


Assuntos
Paracoccus denitrificans/enzimologia , Penicilina Amidase/química , Penicilina Amidase/metabolismo , Achromobacter denitrificans/enzimologia , Estabilidade Enzimática/genética , Escherichia coli/enzimologia , Concentração de Íons de Hidrogênio , Paracoccus denitrificans/genética
4.
Biochim Biophys Acta ; 1830(11): 5087-94, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23891708

RESUMO

BACKGROUND: Plant protease inhibitors (PIs) constitute a diverse group of proteins capable of inhibiting proteases. Among PIs, serine PIs (SPIs) display stability and conformational restrictions of the reactive site loop by virtue of their compact size, and by the presence of disulfide bonds, hydrogen bonds, and other weak interactions. SCOPE OF REVIEW: The significance of various intramolecular interactions contributing to protein folding mechanism and their role in overall stability and activity of SPIs is discussed here. Furthermore, we have reviewed the effect of variation or manipulation of these interactions on the activity/stability of SPIs. MAJOR CONCLUSIONS: The selective gain or loss of disulfide bond(s) in SPIs can be associated with their functional differentiation, which is likely to be compensated by non-covalent interactions (hydrogen bonding or electrostatic interactions). Thus, these intramolecular interactions are collectively responsible for the functional activity of SPIs, through the maintenance of scaffold framework, conformational rigidity and shape complementarities of reactive site loop. GENERAL SIGNIFICANCE: Structural insight of these interactions will provide an in-depth understanding of kinetic and thermodynamic parameters involved in the folding and stability mechanisms of SPIs. These features can be explored for engineering canonical SPIs for optimizing their overall stability and functionality for various applications.


Assuntos
Proteínas de Plantas/antagonistas & inibidores , Proteínas de Plantas/metabolismo , Serina Proteases/metabolismo , Inibidores de Serina Proteinase/farmacologia , Serina/metabolismo , Domínio Catalítico , Dobramento de Proteína , Relação Estrutura-Atividade
5.
Microbiology (Reading) ; 160(Pt 6): 1162-1174, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24644246

RESUMO

Bile salt hydrolases (BSHs) are gut microbial enzymes that play a significant role in the bile acid modification pathway. Penicillin V acylases (PVAs) are enzymes produced by environmental microbes, having a possible role in pathogenesis or scavenging of phenolic compounds in their microbial habitats. The correct annotation of such physiologically and industrially important enzymes is thus vital. The current methods relying solely on sequence homology do not always provide accurate annotations for these two members of the cholylglycine hydrolase (CGH) family as BSH/PVA enzymes. Here, we present an improved method [binding site similarity (BSS)-based scoring system] for the correct annotation of the CGH family members as BSH/PVA enzymes, which along with the phylogenetic information incorporates the substrate specificity as well as the binding site information. The BSS scoring system was developed through the analysis of the binding sites and binding modes of the available BSH/PVA structures with substrates glycocholic acid and penicillin V. The 198 sequences in the dataset were then annotated accurately using BSS scores as BSH/PVA enzymes. The dataset presented contained sequences from Gram-positive bacteria, Gram-negative bacteria and archaea. The clustering obtained for the dataset using the method described above showed a clear distinction in annotation of Gram-positive bacteria and Gram-negative bacteria. Based on this clustering and a detailed analysis of the sequences of the CGH family in the dataset, we could infer that the CGH genes might have evolved in accordance with the hypothesis stating the evolution of diderms and archaea from the monoderms.


Assuntos
Amidoidrolases/classificação , Amidoidrolases/metabolismo , Evolução Molecular , Amidoidrolases/genética , Archaea/enzimologia , Sítios de Ligação , Ácido Glicocólico/metabolismo , Bactérias Gram-Negativas/enzimologia , Bactérias Gram-Positivas/enzimologia , Penicilina V/metabolismo , Filogenia , Ligação Proteica , Especificidade por Substrato
6.
Biochem Biophys Res Commun ; 437(4): 538-43, 2013 Aug 09.
Artigo em Inglês | MEDLINE | ID: mdl-23850621

RESUMO

Penicillin V acylases (PVAs) and bile salt hydrolases (BSHs) have considerable sequence and structural similarity; however, they vary significantly in their substrate specificity. We have identified a PVA from a Gram-negative organism, Pectobacterium atrosepticum (PaPVA) that turned out to be a remote homolog of the PVAs and BSHs reported earlier. Even though the active site residues were conserved in PaPVA it showed high specificity towards penV and interestingly the penV acylase activity was inhibited by bile salts. Comparative modelling and docking studies were carried out to understand the structural differences of the binding site that confer this characteristic property. We show that PaPVA exhibits significant differences in structure, which are in contrast to those of known PVAs and such enzymes from Gram-negative bacteria require further investigation.


Assuntos
Proteínas de Bactérias/química , Pectobacterium/enzimologia , Penicilina Amidase/química , Amidoidrolases/química , Ácidos e Sais Biliares/química , Domínio Catalítico , Relação Dose-Resposta a Droga , Ligação de Hidrogênio , Hidrólise , Simulação de Acoplamento Molecular , Ligação Proteica , Estrutura Secundária de Proteína , Alinhamento de Sequência , Especificidade por Substrato
7.
Artigo em Inglês | MEDLINE | ID: mdl-23908045

RESUMO

Kluyvera citrophila penicillin G acylase (KcPGA) has recently attracted increased attention relative to the well studied and commonly used Escherichia coli PGA (EcPGA) because KcPGA is more resilient to harsh conditions and is easier to immobilize for the industrial hydrolysis of natural penicillins to generate the 6-aminopenicillin (6-APA) nucleus, which is the starting material for semi-synthetic antibiotic production. Like other penicillin acylases, KcPGA is synthesized as a single-chain inactive pro-PGA, which upon autocatalytic processing becomes an active heterodimer of α and ß chains. Here, the cloning of the pac gene encoding KcPGA and the preparation of a slow-processing mutant precursor are reported. The purification, crystallization and preliminary X-ray analysis of crystals of this precursor protein are described. The protein crystallized in two different space groups, P1, with unit-cell parameters a = 54.0, b = 124.6, c = 135.1 Å, α = 104.1, ß = 101.4, γ = 96.5°, and C2, with unit-cell parameters a = 265.1, b = 54.0, c = 249.2 Å, ß = 104.4°, using the sitting-drop vapour-diffusion method. Diffraction data were collected at 100 K and the phases were determined using the molecular-replacement method. The initial maps revealed electron density for the spacer peptide.


Assuntos
Proteínas de Bactérias/genética , Clonagem Molecular , Regulação Bacteriana da Expressão Gênica , Kluyvera/genética , Mutação/genética , Penicilina Amidase/genética , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/química , Clonagem Molecular/métodos , Cristalização , Cristalografia por Raios X , Kluyvera/enzimologia , Penicilina Amidase/biossíntese , Penicilina Amidase/química , Dobramento de Proteína
8.
J Fluoresc ; 22(1): 431-41, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21947569

RESUMO

In mammalian cells, the heme-regulated inhibitor (HRI) plays a critical role in the regulation of protein synthesis at the initiation step through phosphorylation of α-subunit of the eukaryotic initiation factor 2 (eIF2). In this study we have cloned and performed biophysical characterization of the kinase catalytic domain (KD) of rabbit HRI. The KD described here comprises kinase 1, the kinase insertion domain (KI) and kinase 2. We report here the existence of an active and stable monomer of HRI (KD). The HRI (KD) containing three tryptophan residues was examined for its conformational transitions occurring under various denaturing conditions using steady-state and time-resolved tryptophan fluorescence, circular dichroism (CD) and hydrophobic dye binding. The parameter A and phase diagram analysis revealed multi-state unfolding and existence of three stable intermediates during guanidine hydrochloride (Gdn-HCl) induced unfolding of HRI (KD). The protein treated with 6 M Gdn-HCl showed collisional and static mechanism of acrylamide quenching and the constants (K(sv) = 3.08 M(-1) and K(s)= 5.62 M(-1)) were resolved using time resolved fluorescence titration. Based on pH, guanidine hydrochloride and temperature mediated transitions, HRI (KD) appears to exemplify a rigid molten globule-like intermediate with compact secondary structure, altered tertiary structure and exposed hydrophobic patches at pH 3.0. The results indicate the inherent structural stability of HRI (KD), a member of the class of stress response proteins.


Assuntos
Domínio Catalítico , Biossíntese de Proteínas , eIF-2 Quinase/química , eIF-2 Quinase/metabolismo , Acrilamida/química , Animais , Clonagem Molecular , Guanidina/farmacologia , Concentração de Íons de Hidrogênio , Peso Molecular , Desdobramento de Proteína/efeitos dos fármacos , Coelhos , Análise Espectral , eIF-2 Quinase/genética , eIF-2 Quinase/isolamento & purificação
9.
Artigo em Inglês | MEDLINE | ID: mdl-22442220

RESUMO

The enzyme penicillin G acylase (EC 3.5.1.11) catalyzes amide-bond cleavage in benzylpenicillin (penicillin G) to yield 6-aminopenicillanic acid, an intermediate chemical used in the production of semisynthetic penicillins. A thermostable penicillin G acylase from Alcaligenes faecalis (AfPGA) has been crystallized using the hanging-drop vapour-diffusion method in two different space groups: C222(1), with unit-cell parameters a = 72.9, b = 86.0, c = 260.2 , and P4(1)2(1)2, with unit-cell parameters a = b = 85.6, c = 298.8 . Data were collected at 293 and the structure was determined using the molecular-replacement method. Like other penicillin acylases, AfPGA belongs to the N-terminal nucleophilic hydrolase superfamily, has undergone post-translational processing and has a serine as the N-terminal residue of the ß-chain. A disulfide bridge has been identified in the structure that was not found in the other two known penicillin G cylase structures. The presence of the disulfide bridge is perceived to be one factor that confers higher stability to this enzyme.


Assuntos
Alcaligenes faecalis/enzimologia , Penicilina Amidase/química , Cristalização , Cristalografia por Raios X , Temperatura Alta , Modelos Moleculares , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína
10.
J Fluoresc ; 21(2): 753-63, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21069441

RESUMO

Biophysical characterization of a lectin from Ariesaema curvatum (ACL) was carried out using steady state as well as time resolved fluorescence and CD spectroscopy under various denaturing conditions. An intermediate with altered tryptophan microenvironment was detected in the phase diagram, which exibited pronounced secondary structure and hemagglutinating activity in presence of 0.25 M Gdn-HCl. An acid induced molten- globule like structure possessing activity and higher thermostability was detected. Transition to the molten globule state was reversible in nature. The lectin retained hemagglutinating activity even after incubation at 95 °C. Both chemical and thermal unfolding of the lectin were found to consist of multistate processes. Fluorescence quenching of ACL was strong with acrylamide and KI. The single tryptophan was found to be surrounded by high density of the positively charged amino acid residues as shown by a ten fold higher K(sv) for KI compared to that for CsCl. The average lifetime of tryptophan fluorescence increased from 1.24 ns in the native state to 1.72 ns in the denatured state.


Assuntos
Arisaema , Lectinas de Plantas/química , Metabolismo dos Carboidratos , Concentração de Íons de Hidrogênio , Lectinas de Plantas/metabolismo , Conformação Proteica/efeitos dos fármacos , Desnaturação Proteica/efeitos dos fármacos , Estabilidade Proteica/efeitos dos fármacos , Espectrometria de Fluorescência , Especificidade por Substrato , Temperatura
11.
Artigo em Inglês | MEDLINE | ID: mdl-21636920

RESUMO

A Kunitz-type trypsin inhibitor protein (CPTI) purified from chickpea seeds was estimated to have a molecular mass of 18 kDa on SDS-PAGE. The IC(50) value of CPTI was determined to be 2.5 µg against trypsin. The inhibitory activity of CPTI is 114 TIU (trypsin inhibitory units) per milligram of protein, which is high compared with those of other known Kunitz-type trypsin inhibitors from legumes. CPTI crystallized in three different orthorhombic crystal forms: P2(1)2(1)2 form A, P2(1)2(1)2 form B and P2(1)2(1)2(1). The crystals of P2(1)2(1)2 form A, with unit-cell parameters a = 37.2, b = 41.2, c = 104.6 Å, diffracted to 2.0 Šresolution at the home source and to 1.4 Šon beamline BM14 at the ESRF. Data were also collected from crystals grown in the presence of iodine. The Matthews coefficient for these crystals was calculated to be 2.37 Å(3) Da(-1), corresponding to a solvent content of 42%. The other two crystal forms (P2(1)2(1)2 form B and P2(1)2(1)2(1)) diffracted comparatively poorly.


Assuntos
Cicer/química , Proteínas de Plantas/química , Inibidores da Tripsina/química , Cristalização , Cristalografia por Raios X , Sementes/química , Inibidores da Tripsina/isolamento & purificação
12.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 67(Pt 12): 1534-6, 2011 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-22139159

RESUMO

The plant Jatropha curcas (Euphorbiaceae) is an important source of biofuel from the inedible oil present in its toxic seeds. The toxicity arises from the presence of curcin, a ribosome-inactivating protein showing haemagglutination activity. In this communication, the purification, crystallization and preliminary X-ray characterization are reported of a small protein isolated from J. curcas seeds with a molecular mass of ~10 kDa that agglutinates rabbit erythrocytes. The protein was crystallized using the hanging-drop vapour-diffusion method and also by the microbatch method in 72-well HLA plates, using PEG 8000 as the precipitant in both conditions. X-ray diffraction data collected from the rod-shaped crystals were processed in the orthorhombic space group P2(1)2(1)2(1). The crystals diffracted to 2.8 Å resolution at 103 K.


Assuntos
Hemaglutininas/química , Jatropha/química , Cristalização , Cristalografia por Raios X , Hemaglutininas/isolamento & purificação , Sementes/química
13.
Acta Crystallogr D Biol Crystallogr ; 65(Pt 1): 1-10, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19153460

RESUMO

The crystal structures of proteins showing homotetrameric association, a common feature observed in many lectins, have been analyzed in order to understand the characteristics of tetrameric association in terms of the arrangement of subunits and their biological significance. The analysis could group the tetramer units into the following four categories. (i) Tetrahedral molecules, in which the four monomers form a nearly perfect tetrahedral arrangement. The angle between the axes of any two monomers is approximately 109 degrees. (ii) Molecules that form a sandwiched dimer of dimers in which the two dimers are arranged perpendicular to each other, one upon the other. (iii) Planar molecules, in which the four monomers lie in one plane and the corresponding sides of adjacent monomers face in opposite directions. This can be considered as a flattened tetrahedral shape. (iv) Planar closed molecules, in which all four monomers lie in one plane arranged in a head-to-tail fashion in a square. The first group and its variant, the third group, are the most commonly found arrangements in crystal structures. Each arrangement has its own importance for biological function. Some tetrameric assemblies that deviate from the majority described above also have relevance to their biological function.


Assuntos
Lectinas/química , Substâncias Macromoleculares/química , Proteínas de Membrana/química , Modelos Moleculares , Subunidades Proteicas/química , Animais , Sítios de Ligação , Biologia Computacional , Cristalização , Cristalografia por Raios X , Lectinas/metabolismo , Substâncias Macromoleculares/metabolismo , Proteínas de Membrana/metabolismo , Ligação Proteica , Multimerização Proteica , Estrutura Quaternária de Proteína , Subunidades Proteicas/metabolismo , Relação Estrutura-Atividade , Sequências de Repetição em Tandem
14.
Biochem Biophys Res Commun ; 390(2): 273-9, 2009 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-19800319

RESUMO

The alpha-subunit of the human eukaryotic initiation factor 2 (heIF2alpha), a GTP binding protein, plays a major role in the initiation of protein synthesis. During various cytoplasmic stresses, eIF2alpha gets phosphorylated by eIF2alpha-specific kinases resulting in inhibition of protein synthesis. The cloned and over expressed heIF2alpha, a protein with a single tryptophan (trp) residue was examined for its conformational characteristics using steady-state and time-resolved tryptophan fluorescence, circular dichroism (CD) and hydrophobic dye binding. The steady-state fluorescence spectrum, fluorescence lifetimes (tau(1)=1.13ns and tau(2)=4.74ns) and solute quenching studies revealed the presence of trp conformers in hydrophobic and differential polar environment at any given time. Estimation of the alpha-helix and beta-sheet content showed: (i) more compact structure at pH 2.0, (ii) distorted alpha-helix and rearranged beta-sheet in presence of 4M guanidine hydrochloride and (iii) retention of more than 50% ordered structure at 95 degrees C. Hydrophobic dye binding to the protein with loosened tertiary structure was observed at pH 2.0 indicating the existence of a molten globule-like structure. These observations indicate the inherent structural stability of the protein under various denaturing conditions.


Assuntos
Fator de Iniciação 2 em Eucariotos/química , Triptofano/química , Dicroísmo Circular , Clonagem Molecular , Fator de Iniciação 2 em Eucariotos/genética , Fluorescência , Humanos , Interações Hidrofóbicas e Hidrofílicas , Conformação Proteica , Desnaturação Proteica
15.
J Fluoresc ; 19(2): 239-48, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18726677

RESUMO

Transitions in the tryptophan microenvironment and secondary structure of two monocot lectins from Sauromatum guttatum and Arisaema tortuosum under different denaturing conditions were studied by steady state and time resolved fluorescence and CD spectroscopy. The lectins exist as tetramers with a single tryptophan residue estimated per monomer, present in a polar environment. Quenching with ionic quenchers showed predominantly electropositive environment for tryptophan residues. Acrylamide had maximum quenching effect. A decrease in KI quenching due to lectin denaturation indicated redistribution of charges as a result of possible conformational change. The two values for lifetimes of tryptophanyl population (1.2-1.4 and 6.3-6.4 ns) reduced substantially on quenching or denaturation. Similarly, both the lectins showed a drastic loss of secondary structure in 5 M Gdn-HCl or 6 M Urea or at pH 2.0 and below. For the first time araceous lectins, like legume lectins are shown to bind adenine. The presence of a compact structure at alkaline pH 10.0-12.0 was observed in CD spectra.


Assuntos
Dicroísmo Circular/métodos , Lectinas/química , Proteínas de Plantas/química , Espectrometria de Fluorescência/métodos , Cinética , Conformação Proteica , Desnaturação Proteica , Estrutura Secundária de Proteína , Triptofano
16.
Med Princ Pract ; 18(2): 85-92, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19204425

RESUMO

OBJECTIVE: The aim of this study was to investigate the left-ventricular (LV) mass-adjusted association between low heart rate variability (HRV) and atherosclerotic cardiovascular disease (ASCVD) among hemodialysis patients in Kuwait. SUBJECTS AND METHODS: One hundred and eight patients were enrolled in the study. HRV time domain measures were obtained by 48-hour Holter monitoring, including the standard deviation of all R-wave-to-R-wave (RR) intervals (SDNN), standard deviation of all 5-min averaged intervals (SDANN), HRV triangular index (HRV-TI), percent of adjacent RR intervals differing by >50 ms (pNN50), and root mean square of sums of squares of all differences (rMSSD). Left ventricular ejection fraction (LVEF) and LV mass index (LVMI) were measured by M-mode echocardiography. Comorbidity was assessed using medical record review. Prevalent ASCVD was defined as coronary artery, cerebrovascular, or peripheral vascular disease. RESULTS: Prevalence of ASCVD, LV hypertrophy, and LVEF <40% were 56, 59, and 10%, respectively. The SDANN was negatively associated with ASCVD (-20 ms; p = 0.003), LV systolic dysfunction (-20 ms; p = 0.001), elevated LVMI (-20 ms; p = 0.002), hypertension (-34 ms; p = 0.01), and diabetes (-20 ms; p = 0.001). After adjustment for hypertension and LVMI using logistic regression, ASCVD was associated with the lowest quartile of SDANN (OR = 4.3, p = 0.009), HRV-TI (OR = 3.3, p = 0.03), and SDNN (OR = 2.3, p = 0.10). These associations persisted after adjusting for LVEF. CONCLUSION: In dialysis patients, low HRV indices were strongly associated with prevalent ASCVD, independent of LVMI and LVEF. The interrelationships among HRV, diabetes, hypertension, and LVMI should be addressed in studies of HRV and ASCVD.


Assuntos
Aterosclerose/complicações , Frequência Cardíaca , Diálise Renal , Idoso , Índice de Massa Corporal , Estudos Transversais , Eletrocardiografia , Feminino , Humanos , Hipertensão/complicações , Kuweit/epidemiologia , Masculino , Pessoa de Meia-Idade , Prevalência , Fumar
17.
J Biomol Struct Dyn ; 37(10): 2669-2677, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-30052127

RESUMO

Kunitz-type trypsin inhibitors bind to the active pocket of trypsin causing its inhibition. Plant Kunitz-type inhibitors are thought to be important in defense, especially against insect pests. From sequence analysis of various Kunitz-type inhibitors from plants, we identified CaTI2 from chickpea as a unique variant lacking the functionally important arginine residue corresponding to the soybean trypsin inhibitor (STI) and having a distinct and unique inhibitory loop organization. To further explore the implications of these sequence variations, we obtained the crystal structure of recombinant CaTI2 at 2.8Å resolution. It is evident from the structure that the variations in the inhibitory loop facilitates non-substrate like binding of CaTI2 to trypsin, while the canonical inhibitor STI binds to trypsin in substrate like manner. Our results establish the unique mechanism of trypsin inhibition by CaTI2, which warrant further research into its substrate spectrum. Abbreviations BApNA Nα-Benzoyl-L-arginine 4-nitroanilide BPT bovine pancreatic trypsin CaTI2 Cicer arietinum L trypsin inhibitor 2 DrTI Delonix regia Trypsin inhibitor EcTI Enterolobium contortisiliquum trypsin inhibitor ETI Erythrina caffra trypsin inhibitor KTI Kunitz type inhibitor STI soybean trypsin inhibitor TKI Tamarindus indica Kunitz inhibitor Communicated By Ramaswamy H. Sarma.


Assuntos
Cicer/química , Modelos Moleculares , Extratos Vegetais/química , Inibidor da Tripsina de Soja de Kunitz/química , Inibidores da Tripsina/química , Tripsina/química , Sequência de Aminoácidos , Aminoácidos , Animais , Sítios de Ligação , Domínio Catalítico , Bovinos , Cristalografia por Raios X , Ativação Enzimática , Cinética , Simulação de Acoplamento Molecular , Simulação de Dinâmica Molecular , Extratos Vegetais/farmacologia , Ligação Proteica , Conformação Proteica , Proteínas Recombinantes , Análise Espectral , Relação Estrutura-Atividade , Inibidor da Tripsina de Soja de Kunitz/farmacologia , Inibidores da Tripsina/farmacologia
18.
Biochim Biophys Acta ; 1774(10): 1264-73, 2007 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-17869196

RESUMO

Different protease inhibitors including Bowman-Birk type (BBI) have been reported from the seeds of Vigna unguiculata. Protease isoinhibitors of double-headed Bowman-Birk type from the seeds of Vigna unguiculata have been purified and characterized. The BBI from Vigna unguiculata (Vu-BBI) has been found to undergo self-association to form very stable dimers and more complex oligomers, by size-exclusion chromatography and SDS-PAGE in the presence of urea. Many BBIs have been reported to undergo self-association to form homodimers or more complex oligomers in solution. Only one dimeric crystal structure of a BBI (pea-BBI) is reported to date. We report the three-dimensional structure of a Vu-BBI determined at 2.5 A resolution. Although, the inhibitor has a monomer fold similar to that found in other known structures of Bowman-Birk protease inhibitors, its quaternary structure is different from that commonly observed in this family. The structural elements responsible for the stability of monomer molecule and dimeric association are discussed. The Vu-BBI may use dimeric or higher quaternary association to maintain the physiological state and to execute its biological function.


Assuntos
Fabaceae/enzimologia , Inibidor da Tripsina de Soja de Bowman-Birk/química , Inibidores da Tripsina/química , Sequência de Aminoácidos , Sítios de Ligação , Cristalografia por Raios X , Dimerização , Fabaceae/genética , Dados de Sequência Molecular , Estrutura Quaternária de Proteína , Inibidor da Tripsina de Soja de Bowman-Birk/metabolismo , Inibidores da Tripsina/metabolismo
19.
Int J Biol Macromol ; 42(2): 203-7, 2008 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-18063031

RESUMO

The hemagglutinin from the seeds of Moringa oleifera (MoL) agglutinates human as well as rabbit erythrocytes; the affinity for the latter is almost 250 times more than that for the former. MoL was inhibited by glycoproteins namely thyroglobulin, fetuin and holotransferin indicating the complex sugar specificity of the lectin. The protein is a homodimer with molecular mass of 14kDa, subunits (7.1kDa) linked by the disulfide bond(s). The secondary structure elements of MoL are alpha-helix, 28%; beta-sheet, 23%; turn 20% and unordered 28%. While the activity and secondary structure were not affected at extreme pH and high temperature, they were drastically affected in presence of dithiothreitol at and above pH 7.0, indicating that disulfide linkages hold the active conformation of the protein.


Assuntos
Hemaglutininas/química , Hemaglutininas/farmacologia , Moringa oleifera/química , Relação Estrutura-Atividade , Animais , Metabolismo dos Carboidratos , Carboidratos , Dicroísmo Circular , Cisteína/metabolismo , Dissulfetos/metabolismo , Eritrócitos/efeitos dos fármacos , Eritrócitos/metabolismo , Hemaglutininas/isolamento & purificação , Hemaglutininas/metabolismo , Humanos , Conformação Molecular , Coelhos , Sementes/química , Sensibilidade e Especificidade
20.
Int J Biol Macromol ; 113: 933-943, 2018 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-29499268

RESUMO

Legume Kunitz type trypsin inhibitor (KTI) family is one of the most versatile families of proteins. A typical KTI features a single peptide folded in ß-trefoil manner, with the molecular weight about 20-22kDa and two disulphide bonds. The members are known to inhibit a wide range of serpins proteases at the same time many of them possess unique features. Copaifera langsdorffii Trypsin inhibitor (CTI) has a ß-trefoil fold made up of two non-covalently bound polypeptide chains with only a single disulfide bridge. Delonix regia Trypsin inhibitor (DrTI) has one amino acid insertion between P1 and P2 of the reactive site distorting its conformation. Bauhinia bauhinioides Cruzipain inhibitor (BbCI) has a conservative ß-trefoil fold but lacks disulfide bonds. Such subtle differences in structures make Kunitz inhibitors different from other inhibitor families. Most of the studies on these inhibitors are focused towards their proposed role in defense from insect pests and wounding but their exact physiological role in nature is still uncharted. Thus, it would be very interesting to closely analyze the structural details of these inhibitors in order to ascertain their biological role and other fascinating applications.


Assuntos
Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Inibidores da Tripsina/química , Inibidores da Tripsina/metabolismo , Animais , Humanos , Relação Estrutura-Atividade
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