Formation of the 3-Pentanone ion from ionized propyl propanoate through Ion-Neutral complexes.

Formation of the 3-pentanone ion (3) from ionized propyl propanoate through the complex [C2H5CO(+) (•)OC3H7] is proposed based on data obtained by photoionization. The threshold and energy dependence for forming 3 relative to those for related processes support this proposal. The threshold for forming 3 coincides with that predicted for forming [CH3CH2CO(+) (•)CH2CH3], suggesting that that complex is also an intermediate in the pathway to 3. 3-Pentanone ion formation is important much further above threshold than is alkane elimination through [RCO(+) (•)R] complexes. This adds to evidence that reactions between the partners in ion-dipole complexes take place over a wider energy range than do such reactions in complexes containing nonpolar neutral partners.

Isomeric ion-neutral complexes generated from ionized 2-Methylpropanol and n-Butanol: the effect of the polarity of the neutral partner on complex-mediated reactions.

Photoionization was used to characterize the energy dependence of C3H 7 (+) , C3H 6 (+) , CH3OH 2 (+) and CH2=OH(+) formation from (CH3)2)CHCH2OH(+•) (1) and CH3CH2CH2CH2OH(+•) (2). Decomposition patterns of labeled ions demonstrate that close to threshold these products are primarily formed through [CH 3 (+) CHCH3 (•)CH2OH] (bd3) from 1 and through [CH3CH2CH2 (•)CH2=OH(+)] (9) from 2. The onset energies for forming the above products from 1 are spread over 85 kJ mol(-1), and are all near thermochemical threshold. The corresponding onsets from 2 are in a 19 kJ mol(-1) range, and all except that of CH2=OH(+) are well above their thermochemical thresholds. Each decomposition of 3 occurs over a broad energy range (> 214 kJ mol(-1)), This demonstrates that ion-permanent dipole complexes can be significant intermediates over a much wider energy range than ion-induced dipole complexes can be. H-exchange between partners in the complexes appears to be much faster than exchange by conventional interconversions of the alcohol molecular ions with their distonic isomers. The onsets for water elimination from 1 and 2 are below the onsets for the complex-mediated processes, demonstrating that the latter are not necessarily the lowest energy decompositions of a given ion when the neutral partner in the complex is polar.

A photoionization study of the ion-neutral complexes CH3CH (+)CH 3 (·) CH 2CH 3] and CH 3CH 2CH (+)CH 3 (·) CH 3 in the gas phase: Formation, H-transfer and C-C bond formation between partners, and channeling of energy into dissociation.

Photoionization mass spectrometry was used to investigate the dynamics of ion-neutral complex-mediated dissociations of the n-pentane ion (1). Reinterpretation of previous data demonstrates that a fraction of ions 1 isomerizes to the 2-methylbutane ion (2) through the complex CH3CH(+)CH 3 (·) CH2CH3 (3), but not through CH3CH(+)CH2CH 3 (·) CH3 (4). The appearance energy for C3Hin 7 (+) formation from 1 is 66 kJ mol(-1) below that expected for the formation of n-C3H 7 (+) and just above that expected for formation of i-C3H 7 (+) . This demonstrates that the H shift that isomerizes C3H 7 (+) is synchronized with bond cleavage at the threshold for dissociation to that product. It is suggested that ions that contain n-alkyl chains generally dissociate directly to more stable rearranged carbenium ions. Ethane elimination from 3 is estimated to be about seven times more frequent than is C-C bond formation between the partners in that complex to form 2, which demonstrates a substantial preference in 3 for H abstraction over C-C bond formation. In 1 → CH3CH(+)CH2CH3 + CH3 by direct cleavage of the C1-C2 bond, the fragments part rapidly enough to prevent any reaction between them. However, 1 → 2 → 4 → C4H 8 (+) + CH4 occurs in this same energy range. Thus some of the potential energy made available by the isomerization of n-C4H9 in 1 is specifically channeled into the coordinate for dissociation. In contrast, analogous formation of 3 by 1 → 3 is predominantly followed by reaction between the electrostatically bound partners.

Size effects in ion-neutral complex-mediated alkane eliminations from ionized aliphatic ethers.

The effects of the size of the ionic and neutral partners on ion-neutral complex-mediated alkane eliminations from ionized aliphatic ethers were determined by obtaining metastable decomposition spectra and photoionization ionization efficiency curves. Increasing the size of the ionic partner decreases the competitiveness of alkane elimination with alkyl loss. This is attributed to decreasing attraction between the partners with increasing distance between the neutral partner and the center of charge in the associated ion. Increasing the size of the neutral partner lowers the threshold for alkane elimination relative to that for simple dissociation when the first threshold is above ΔHf(products). This is attributed to increasing attraction between the partners with increasing polarizability of the radical in the complex. Adding a CH2 to the radical in a complex seems to increase the attraction between the partners by about 24 kJ mol(-1).

Theoretical study of deprotonated glucopyranosyl disaccharide fragmentation.

Molecular orbital calculations were used to investigate the fragmentation of deprotonated glucopyranosyl disaccharides. Based on data from collisional activation and isotopic labeling experiments, fragmentation mechanisms are proposed, with calculated transition states being used to study the energetics of fragmentation. The calculations suggest that deprotonation at the C(2) hydroxyl of the non-reducing ring, following ring opening, may be important for disaccharide fragmentation. It is also shown that the stereochemistry at the 2-position of the non-reducing ring may have a significant effect on disaccharide fragmentation, particularly with regard to determination of the anomeric configuration.

Characterization of a truncated form of recombinant porcine growth hormone generated in vitro during solubilization of inclusion bodies.

During the development of a novel solubilization procedure (1) for bacterial inclusion bodies (IB's) using the cationic surfactant cetyltrimethylammonium chloride (CTAC; (CH3)3-N(+)-C16H33Cl) significant proportions of an apparently truncated, lower molecular weight (MW) variant form of recombinant pig growth hormone (rPGH) were observed on sodium dodecyl sulfate-polyacrylamide gel electrophoresis relative to pig pituitary derived GH. The formation of this rPGH-like species, designated P-band, was found to occur in vitro during solubilization of IB's by CTAC and was dependent on pH and temperature of solubilization, but was not due directly to the use of CTAC, as purified soluble rPGH of the correct MW could not be converted to P-band by exposure to CTAC alone. The bacterial proteolysis suspected as being responsible for the in vitro formation of P-band could not be inhibited by the use of a "cocktail" of defined antiproteolytic agents but was inhibited by pH and temperature, and by solubilization of IB's in 5% SDS, 6 M gnHCl or 7.5 M urea. Detailed characterization of the structure of P-band by N-terminal amino acid sequencing, electrospray mass spectrometry, radioreceptor binding assay, peptide mapping, and C-terminal peptide sequencing confirmed that P-band was approximately 950 mass units smaller than normal rPGH and lacked eight C-terminal amino acids. A significant finding was that P-band is unable to bind to the pig liver-membrane GH receptor in a competitive radioreceptor assay. Analysis of the relative secondary and tertiary structure of P-band by circular dichroism spectra, intrinsic tryptophan-dependent fluorescence, and average surface hydrophobicity (2) suggested small but measurable changes to the overall structure of P-band relative to normal rPGH. Consequently, our results also suggest that the C-terminal portion of rPGH, including in particular the last eight amino acids, is of major importance in the binding of rPGH to the pig liver membrane GH receptor.

Identification of glutamic acid 105 at the active site of Bacillus amyloliquefaciens 1,3-1,4-beta-D-glucan 4-glucanohydrolase using epoxide-based inhibitors.

Bacillus amyloliquefaciens 1,3-1,4-beta-D-glucan 4-glucanohydrolase (EC 3.2.1.73) was modified by the mechanism-based, affinity-labeling reagent [14C](3,4)-epoxybutyl beta-D-cellobioside. Following partial inactivation a completely inactivated enzyme preparation containing 1.1 mol of covalently bound inhibitor/mol of protein was obtained by chromatography on a cellulosic matrix. The inactivated enzyme was digested with endoproteinase Glu-C and radioactive peptides purified by reversed-phase high performance liquid chromatography (HPLC). The affinity label was esterified exclusively to the gamma-carboxylate of Glu105 in the sequence Gly-Thr-Pro-Trp-Asp-Glu-Ile-Asp-Ile-Glu109. The sequence motif Glu-(Ile/Leu)-Asp-Ile is found in many glucanases and xylanases and may therefore serve to identify the catalytic nucleophile in beta-glycanases, which otherwise exhibit a low degree of sequence identity. The esterification of Glu105 by the affinity label abolished endoproteinase Glu-C-mediated hydrolysis of the Glu-Ile106 peptide bond. Identification of phenylthiohydantoin-Glu105 during automated sequence analysis was not possible unless the affinity label was liberated by prior base hydrolysis. These observations formed the basis for the development of a highly sensitive approach for the identification of catalytic carboxylates in polysaccharide hydrolases employing non-radioactive inhibitors, comparative HPLC mapping, electrospray mass spectrometry, and Edman degradation.