Sensing the Small Change of Intermolecular Distance in Supramolecular Assembly by Using the Tunable Emission Wavelength of AIE-Active Luminogens.

The distinct molecular states - single molecule, assembly, and aggregate - of two ionic macromolecules, TPPE-APOSS and TPE-APOSS, are easily distinguishable through their tunable fluorescence emission wavelengths, which reflect variations in intermolecular distances. Both ionic macromolecules contain aggregation-induced emission (AIE) active moieties whose emission wavelengths are directly correlated to their mutual distances in solution: far away from each other as individual molecules, maintaining a tunable and relatively long distance in electrostatic interactions-controlled blackberry-type assemblies (microphase separation), or approaching van der Waals close distance in aggregates (macrophase separation). Furthermore, within the blackberry assemblies, the emission wavelength decreases monotonically with increasing assembly size, indicative of shorter intermolecular distances at nanoscale. The emission changes of TPPE-APOSS blackberry assemblies can even be visually distinguishable by eyes when their sizes and intermolecular distances are tuned. Molecular dynamics simulations further revealed that macromolecules are confined in various conformations by controllable intermolecular distances within the blackberry structure, thereby resulting in fluorescence emission with tunable wavelength.

All-atom molecular dynamics simulation of solvent diffusion in an unentangled polystyrene film.

The diffusion behavior of low molecular weight solvents within an unentangled polystyrene film below and above its glass transition temperature is investigated. The diffusion behavior in the glassy state exhibits a distinct behavior known as case II or class II diffusion, noticeably diverging from conventional Fickian diffusion observed above the glass transition temperature of the polymer film. In the context of case II diffusion, the primary experimental observation entails the emergence of a well-defined concentration front moving at a constant speed, delineating a swollen, rubbery region from a glassy region within the polymer system. Despite the prevalence of this phenomenon in experimental settings, simulating case II diffusion has posed a significant challenge, primarily due to the computationally intensive nature of the diffusion process. To address this, we have developed an all-atom molecular dynamics simulation approach for the observation of case II diffusion in glassy polymers. This method aims to unravel the intricacies of the diffusion process, providing valuable insights into the dynamic interactions between solvents and the polymer matrix.

Comment on "Effects of topological constraints on linked ring polymers in solvents of varying quality" by Z. A. Dehaghani, I. Chubak, C. N. Likos and M. R. Ejtehadi, Soft Matter, 2020, 16, 3029.

This comment critically evaluates the work of Dehaghani et al., who investigated the conformational behavior of catenated polymers under diverse solvent conditions using coarse-grained molecular dynamics simulations. While their study provides valuable insights into the scaling behavior of poly[n]catenane's radius of gyration in a good solvent, significant discrepancies arise, particularly concerning the reported θ-temperature trends. The validity of their methodology in determining θ-temperatures for linear and ring polymers is questioned, given observed disparities in chosen number of bead ranges that imply varying molecular weights. This comment underscores the need for a meticulous reassessment of the methodologies and interpretations presented in Dehaghani et al.'s study, emphasizing the importance of rigorous considerations in the investigation of the physical properties of catenated polymers.

Multiphasic Coacervates Assembled by Hydrogen Bonding and Hydrophobic Interactions.

Coacervation has emerged as a prevalent mechanism to compartmentalize biomolecules in living cells. Synthetic coacervates help in understanding the assembly process and mimic the functions of biological coacervates as simplified artificial systems. Though the molecular mechanism and mesoscopic properties of coacervates formed from charged coacervates have been well investigated, the details of the assembly and stabilization of nonionic coacervates remain largely unknown. Here, we describe a library of coacervate-forming polyesteramides and show that the water-tertiary amide bridging hydrogen bonds and hydrophobic interactions stabilize these nonionic, single-component coacervates. Analogous to intracellular biological coacervates, these coacervates exhibit "liquid-like" features with low viscosity and low interfacial energy, and form coacervates with as few as five repeating units. By controlling the temperature and engineering the molar ratio between hydrophobic interaction sites and bridging hydrogen bonding sites, we demonstrate the tuneability of the viscosity and interfacial tension of polyesteramide-based coacervates. Taking advantage of the differences in the mesoscopic properties of these nonionic coacervates, we engineered multiphasic coacervates with core-shell architectures similar to those of intracellular biological coacervates, such as nucleoli and stress granule-p-body complexes. The multiphasic structures produced from these synthetic nonionic polyesteramide coacervates may serve as a valuable tool for investigating physicochemical principles deployed by living cells to spatiotemporally control cargo partitioning, biochemical reaction rates, and interorganellar signal transport.

Structure and Thermodynamics of Linear, Ring, and Catenane Polymers in Solutions and at Liquid-Liquid Interfaces.

In recent decades, advances in the syntheses of mechanically interlocked macromolecules, such as catenanes, have led to much greater interest in the applications of these complexes, from molecular motors and actuators to nanoscale computational memory and nanoswitches. Much remains to be understood, however, regarding how catenated ring compounds behave as a result of the effects of different solvents as well as the effects of solvent/solvent interfaces. In this work, we have investigated, using molecular dynamics simulations, the effects of solvation of poly(ethylene oxide) chains of different topologies─linear, ring, and [2]catenane─in two solvents both considered favorable toward PEO (water, toluene) and at the water/toluene interface. Compared to ring and [2]catenane molecules, the linear PEO chain showed the largest increase in size at the water/toluene interface compared to bulk water or bulk toluene. Perhaps surprisingly, observations indicate that the tendency of all three topologies to extend at the water/toluene interface may have more to do with screening the interaction between the two solvents than with optimizing specific solvent-polymer contacts.

Synergistic Effect of Physical and Chemical Cross-Linkers Enhances Shape Fidelity and Mechanical Properties of 3D Printable Low-Modulus Polyesters.

Three-dimensional (3D) printing is becoming increasingly prevalent in tissue engineering, driving the demand for low-modulus, high-performance, biodegradable, and biocompatible polymers. Extrusion-based direct-write (EDW) 3D printing enables printing and customization of low-modulus materials, ranging from cell-free printing to cell-laden bioinks that closely resemble natural tissue. While EDW holds promise, the requirement for soft materials with excellent printability and shape fidelity postprinting remains unmet. The development of new synthetic materials for 3D printing applications has been relatively slow, and only a small polymer library is available for tissue engineering applications. Furthermore, most of these polymers require high temperature (FDM) or additives and solvents (DLP/SLA) to enable printability. In this study, we present low-modulus 3D printable polyester inks that enable low-temperature printing without the need for solvents or additives. To maintain shape fidelity, we incorporate physical and chemical cross-linkers. These 3D printable polyester inks contain pendant amide groups as the physical cross-linker and coumarin pendant groups as the photochemical cross-linker. Molecular dynamics simulations further confirm the presence of physical interactions between different pendants, including hydrogen bonding and hydrophobic interactions. The combination of the two types of cross-linkers enhances the zero-shear viscosity and hence provides good printability and shape fidelity.

Molecular Dynamics Simulation of Entangled Melts at High Rates: Identifying Entanglement Lockup Mechanism Leading to True Strain Hardening.

In the present work, molecular dynamics simulations are carried out based on the bead-spring model to indicate how the entanglement lockup manifests in the late stage of fast Rouse-Weissnberg number (WiR >>1) uniaxial melt stretching of entangled polymer melts. At high strains, distinct features show up to reveal the emergence of an increasingly tightened entanglement network. Chain tension can build up, peaking at the middle of the chain, to a level for chain scission, through accumulated interchain interactions, as if there is a tug-of-war ongoing for each load-bearing chain. Thanks to the interchain uncrossability, network junctions form by the pairing of two or more hairpins. It is hypothesized that the interchain entanglement at junctions can lockup through prevailing twist-like interchain couplings as long as WiR > 9. In this limit, a significant fraction of chains act like cyclic chains to form a network held by interchain uncrossability, and appreciable chain tension emerges.

Toward the Rational Design of Organic Solar Photovoltaics: Application of Molecular Structure Methods to Donor Polymers.

Conjugated polymers are promising candidates in the design of polymer solar cell materials with suitable electronic properties. Recent studies show that the use of different functional groups as side chain in thiophene-based polymers changes the electronic and conformation structures. Here we design new thiophene-based molecules by replacing the hydrogen attached to the backbone of P3MT with electron-donating and electron-withdrawing groups. We then calculate the HOMO, LUMO, and HOMO-LUMO energy gap to quantify the theoretical merit of the new polymers as solar absorbers and their inter-ring torsional potential to understand their suitability to link together in high conductivity, extended conjugated systems. Calculations are done with first-principles density functional theory (DFT), implemented using B3LYP with dispersion function and 6-31G(d,p) as basis set. Our results show that the HOMO-LUMO gap is sensibly lowered by donating groups and we found that the substitution of the hydrogen with -NH2, and -F gives an energy gap lower than the energy gap of P3MT. The lowest energy gap was found when substituting with -NH2. Electron-withdrawing groups lower the HOMO, with the overall lowest found when -NO2 is used. -COCl, -CONH2, and -Cl give a steric hindrance greater than that of PTB7, which is set as reference. Our calculations show a possible approach to the rational design of donor materials when substituents are inserted systematically in a generic oligomer.

Structure and Dynamics of Nanoconfined Water Between Surfactant Monolayers.

The properties of nanoconfined water arise in direct response to the properties of the interfaces that confine it. A great deal of research has focused on understanding how and why the physical properties of confined water differ greatly from the bulk. In this work, we have used all-atom molecular dynamics (MD) simulations to provide a detailed description of the structural and dynamical properties of nanoconfined water between two monolayers consisting of an archetypal ionic surfactant, cetrimonium bromide (CTAB, [CH3(CH2)15N(CH3)3]+Br-). Small differences in the area per surfactant of the monolayers impart a clear effect on the intrinsic density, mobility, and ordering of the interfacial water layer confined by the monolayers. We find that as the area per surfactant within a monolayer decreases, the mobility of the interfacial water molecules decreases in response. As the monolayer packing density decreases, we find that each individual CTAB molecule has a greater effect on the ordering of water molecules in its first hydration shell. In a denser monolayer, we observe that the effect of individual CTAB molecules on the ordering of water molecules is hindered by increased competition between headgroups. Therefore, when two monolayers with different areas per surfactant are used to confine a nanoscale water layer, we observe the emergence of noncentrosymmetry.

Co-ion Effects in the Self-Assembly of Macroions: From Co-ions to Co-macroions and to the Unique Feature of Self-Recognition.

Macroions, as soluble ions with a size on the nanometer scale, show unique solution behavior different from those of simple ions and large colloidal suspensions. In macroionic solutions, the counterions are known to be important and well-explored. However, the role of co-ions (ions carrying the same type of charge as the macroions) is often ignored. Here, through experimental and simulation studies, we demonstrate the role of co-ions as a function of co-ion size on their interaction with the macroions (using {Mo72Fe30} and {SrPd12} as models) and the related self-assembly into blackberry-type structures in dilute solutions. Several regimes of unique co-ion effects are clearly identified: small ions (halides, oxoacid ions), subnanometer-scaled bulky ions (lacunary Keggin and dodecaborate ions), and those with sizes comparable to the macroions. Small co-ions have no observable effect on the self-assembly of fully hydrophilic {Mo72Fe30}, while due to hydrophobic interaction and intermolecular hydrogen bonds, the small co-ions show influences on the self-assembly of hydrophobic {SrPd12}. Subnanometer ions, a.k.a. "superchaotropic ions", are still too small to assemble into a blackberry by themselves, but they can coassemble with the macroions, showing a strong interaction with the macroionic system. When the co-ion size is comparable to that of the macroions, they assemble independently instead of assembling with the macroions, leading to the previously reported unique self-recognition phenomenon for macroions.

Illustrating the Molecular Origin of Mechanical Stress in Ductile Deformation of Polymer Glasses.

New experiments show that tensile stress vanishes shortly after preyield deformation of polymer glasses while tensile stress after postyield deformation stays high and relaxes on much longer time scales, thus hinting at a specific molecular origin of stress in ductile cold drawing: chain tension rather than intersegmental interactions. Molecular dynamics simulation based on a coarse-grained model for polystyrene confirms the conclusion that the chain network plays an essential role, causing the glassy state to yield and to respond with a high level of intrachain retractive stress. This identification sheds light on the future development regarding an improved theoretical account for molecular mechanics of polymer glasses and the molecular design of stronger polymeric materials to enhance their mechanical performance.

Thermal Properties and Segmental Dynamics of Polymer Melt Chains Adsorbed on Solid Surfaces.

The glass transition of supported polystyrene (PS) and poly(2-vinylpyridine) (P2VP) thin films in the vicinity of the substrate interface was studied by using a nanoplasmonic sensing (NPS) method. This "nanocalorimetric" approach utilizes localized surface plasmon resonance from two-dimensional arrangements of sensor nanoparticles deposited on SiO2-coated glass substrates. The NPS results demonstrated the existence of a high glass transition temperature ( Tg,high) along with the bulk glass transition temperature ( Tg,bulk ≈ 100 °C for PS and P2VP) within the thin films: Tg,high ≈ 160 °C for PS and Tg,high ≈ 200 °C for P2VP. To understand the origin of the Tg,high, we also studied the thermal transitions of lone polymer chains strongly adsorbed onto the substrate surface using solvent rinsing. Interestingly, the NPS data indicated that the Tg,high is attributed to the adsorbed polymer chains. To provide a better understanding of the mechanism of the Tg,high, molecular dynamics simulations were performed on a PS film adsorbed on hydrophobic and hydrophilic substrates. The simulation results illuminated the presence of a higher density region closest to the substrate surface regardless of the magnitude of the polymer-solid interactions. We postulate that the highly packed chain conformation reduces the free volume at the substrate interface, resulting in the Tg,high. Moreover, the simulation results revealed that the deviation of the Tg,high from the bulk Tg,bulk becomes larger as the polymer-substrate interaction increases, which is in line with the experimental findings.

Effect of tacticity on the structure and glass transition temperature of polystyrene adsorbed onto solid surfaces.

We have carried out atomistic (all-atom) molecular dynamics simulations to investigate the effect of tacticity on the structure and glass transition temperature (Tg) of polystyrene (PS) thin films adsorbed on two distinct types of solid substrates. The systems consist of thin films made of atactic, isotactic, and syndiotactic PS chains supported by graphite or hydroxylated α-quartz substrates, which are known to be atomically flat but chemically and structurally different. We have observed a marked dependence of the film structure on substrate type as well as on tacticity. For instance, rings' orientation near substrate surfaces depends on substrate type for atactic PS and isotactic PS films, while no such dependence is observed for syndiotactic PS films whose interfacial structure seems to result from their propensity to adopt the trans conformation rather than their specific interaction with the substrates. Moreover, our results indicate that glass transition temperatures of substrate supported polystyrene films are higher compared to those of the corresponding free-standing films. More specifically, PS films on graphite exhibit larger Tg values than those on α-quartz, and we have noticed that syndiotactic PS has the largest Tg irrespective of the substrate type. Furthermore, the local Tg in the region of the film in contact with the substrates shows a strong tacticity and substrate dependence, whereas no dependencies were found for the local Tg in the middle of the film. Substrate-film interaction energy and chains' dynamics near substrate-film interfaces were subsequently investigated in order to substantiate the obtained Tgs, and it was found that films with higher Tgs are strongly adsorbed on the substrates and/or exhibit smaller interfacial chains' dynamics essentially due to steric hindrance.

Strain rate and temperature dependence of the mechanical properties of polymers: A universal time-temperature superposition principle.

Establishing the Time-Temperature and Frequency-Temperature Superposition Principles (TTSP and FTSP) to describe the mechanical behavior of polymeric materials is always of paramount significance. In this work, by adopting the classic coarse-grained model, we investigate the validity of these superposition principles for a series of networks, such as the pure polymer network, interpenetrating polymer networks composed of stiff and flexible networks (IPNs-SF), interpenetrating polymer networks composed of different cross-linking networks (IPNs-DC), polymer nanocomposites (PNCs), and surface grafted modified PNCs. The study focuses on the three critical mechanical properties such as the stress relaxation, the storage modulus versus the frequency obtained from the dynamic periodic shear deformation, and the uniaxial tensile stress-strain. The glass transition temperature (Tg) is about 0.47 for the simulated polymer network (CL400), and a smooth master curve is obtained for the stress relaxation process by setting the reference temperature Tref = 0.6 via the horizontal shifting process, indicating the validity of TTSP. Furthermore, similar smooth master curves are also achieved for both dynamic periodic shear and uniaxial tensile deformation, which exhibit similar trends and share the identical linear viscoelastic regime in the temperature interval above Tg: 0.55

Hydrogen bond directed surface dynamics at tactic poly(methyl methacrylate)/water interface.

The complexity of induced ordering for tactic poly(methyl methacrylate) (PMMA) thin films in contact with water is examined through all-atom molecular dynamics with validated potentials. We observe that for the water molecules that are hydrogen bonded to the PMMA surface, the isotactic and atactic PMMA show a 33% longer relaxation time compared to syndiotactic PMMA. Almost 94% of hydrogen bonds are with the carbonyl groups of PMMA, irrespective of temperature and tacticity. The stability in re-orientation and nature of hydrogen bond participation for the carbonyl groups as well as about 20% higher interaction energies of carbonyl group hydrogen bonded with water for atactic form indicates existence of cooperative effects. Quantifying the dynamics of hydrogen bond at the tactic interface is important in understanding the role tacticity plays in controlling adhesion and biocompatibility, a design choice that has been gaining ground in the soft material science community.

Generalized model for the diffusion of solvents in glassy polymers: From Fickian to Super Case II.

The diffusion of small solvent molecules in glassy polymers may take on a variety of different forms. Fickian, anomalous, Case II and Super Case II diffusion have all been observed, and theoretical models exist that describe each specific type of behavior. Here we present a single generalized kinetic model capable of yielding all these different types of diffusion on the basis of just two parameters. The principal determinant of the type of diffusion is observed to be a dimensionless parameter, γ, that describes the influence of solvent-induced swelling in lowering the potential barriers separating available solvent sites. A second parameter, η, which characterizes the effect of the solvent in reducing the potential energy of a solvent molecule when at rest at an available site, only influences the type of diffusion to a lesser extent. The theoretical analysis does not include any effects that are explicitly non-local in time, an example of which is the inclusion of polymer viscosity in the Thomas-Windle model; it thus represents a variant of Fick's second law utilizing a concentration-dependent diffusivity when η is small. To check the significance of time-delayed swelling, a simulation of a modified model was performed that contained a history-dependent term. The results were found to be very similar to those in the time-local model.

Cation Translocation around Single Polyoxometalate-Organic Hybrid Cluster Regulated by Electrostatic and Cation-π Interactions.

We report herein an interesting dynamic translocation process of countercations around one polyoxometalate(POM)-organic hybrid anionic cluster at various concentrations and temperatures. It was found that both electrostatic interactions and cation-π interactions regulate the position of small countercations around single clusters. The dynamic geometry and the symmetry of the hybrid macroions are largely affected by the type of counterions, as shown by nuclear magnetic resonance (NMR) spectroscopy studies and all-atom molecular dynamics simulation. It is also shown that electrostatic interactions dominate over cation-π interactions in determining the locations of the counterions in the current system.

Effect of Polymer/Solid and Polymer/Vapor Instantaneous Interfaces on the Interfacial Structure and Dynamics of Polymer Melt Systems.

Polymers are used in a wide range of applications that involve chemical and physical processes taking place at surfaces or interfaces which influence the interaction between the polymer material and the substance that comes into contact with it. Polymer surfaces are usually modified either chemically or physically for specific applications such as facilitating wetting, reducing friction, and enhancing adhesion. The variety and complexity of surface and interfacial processes requires a molecular-level understanding of the structural and dynamical properties of the surface/interface layer to help in the design of materials with desired functional properties. Using molecular dynamics (MD) simulations, we investigate the structure and dynamics at the surface of polymer films. We find that the density profiles of the films as a function of distance relative to an instantaneous surface have a structure indicative of a layering at the polymer/vapor interface similar to the typical layered structure observed at the polymer/substrate interface. However, the interfacial molecules at the polymer/vapor interface have a higher mobility compared to that in the bulk while the mobility of the molecules is lower at the polymer/substrate interface. Time correlation of the instantaneous polymer/vapor interface shows that surface fluctuations are strongly temperature dependent and are directly related to the mobility of polymer chains near the interface.

Carbon Nanotube Based Groundwater Remediation: The Case of Trichloroethylene.

Adsorption of chlorinated organic contaminants (COCs) on carbon nanotubes (CNTs) has been gaining ground as a remedial platform for groundwater treatment. Applications depend on our mechanistic understanding of COC adsorption on CNTs. This paper lays out the nature of competing interactions at play in hybrid, membrane, and pure CNT based systems and presents results with the perspective of existing gaps in design strategies. First, current remediation approaches to trichloroethylene (TCE), the most ubiquitous of the COCs, is presented along with examination of forces contributing to adsorption of analogous contaminants at the molecular level. Second, we present results on TCE adsorption and remediation on pure and hybrid CNT systems with a stress on the specific nature of substrate and molecular architecture that would contribute to competitive adsorption. The delineation of intermolecular interactions that contribute to efficient remediation is needed for custom, scalable field design of purification systems for a wide range of contaminants.

Molecular structure of poly(methyl methacrylate) surface II: Effect of stereoregularity examined through all-atom molecular dynamics.

Utilizing all-atom molecular dynamics (MD), we have analyzed the effect of tacticity and temperature on the surface structure of poly(methyl methacrylate) (PMMA) at the polymer-vacuum interface. We quantify these effects primarily through orientation, measured as the tilt with respect to the surface normal, and the surface number densities of the α-methyl, ester-methyl, carbonyl, and backbone methylene groups. Molecular structure on the surface is a complex interplay between orientation and number densities and is challenging to capture through sum frequency generation (SFG) spectroscopy alone. Independent quantification of the number density and orientation of chemical groups through all-atom MD presents a comprehensive model of stereoregular PMMA on the surface. SFG analysis presented in part I of this joint publication measures the orientation of molecules that are in agreement with MD results. We observe the ester-methyl groups as preferentially oriented, irrespective of tacticity, followed by the α-methyl and carbonyl groups. SFG spectroscopy also points to ester-methyl being dominant on the surface. The backbone methylene groups show a very broad angular distribution, centered along the surface plane. The surface number density ratios of ester-methyl to α-methyl groups show syndiotactic PMMA having the lowest value. Isotactic PMMA has the highest ratios of ester- to α-methyl. These subtle trends in the relative angular orientation and number densities that influence the variation of surface structure with tacticity are highlighted in this article. A more planar conformation of the syndiotactic PMMA along the surface (x-y plane) can be visualized through the trajectories from all-atom MD. Results from conformation tensor calculations for chains with any of their segments contributing to the surface validate the visual observation.