Integration of genomic and ecological methods inform management of an undescribed, yet highly exploited, sardine species.

Assessing genetic diversity within species is key for conservation strategies in the context of human-induced biotic changes. This is important in marine systems, where many species remain undescribed while being overfished, and conflicts between resource-users and conservation agencies are common. Combining niche modelling with population genomics can contribute to resolving those conflicts by identifying management units and understanding how past climatic cycles resulted in current patterns of genetic diversity. We addressed these issues on an undescribed but already overexploited species of sardine of the genus Harengula. We find that the species distribution is determined by salinity and depth, with a continuous distribution along the Brazilian mainland and two disconnected oceanic archipelagos. Genomic data indicate that such biogeographic barriers are associated with two divergent intraspecific lineages. Changes in habitat availability during the last glacial cycle led to different demographic histories among stocks. One coastal population experienced a 3.6-fold expansion, whereas an island-associated population contracted 3-fold, relative to the size of the ancestral population. Our results indicate that the island population should be managed separately from the coastal population, and that a Marine Protected Area covering part of the island population distribution can support the viability of this lineage.

Mice on menu: opportunistic feeding behaviour of the Amazonian silver arowana Osteoglossum bicirrhosum.

Two silver arowana, Osteoglossum bicirrhosum, one male (49.5 cm standard length, LS ) and one female (52.5 cm LS ) that had fed on small-eared colilargo or small-eared pygmy rice rat Oligoryzomys microtis, were sampled during the rising water period in the Brazilian Amazon. The identified prey were 6 and 8 cm long and occupied the entire stomachs of both individuals. This opportunistic feeding behaviour appears to be a strategy for this fish to acquire nutrients during times when its usual aquatic prey is dispersed throughout the flooded forest.

Algorithm exploitation: Humans are keen to exploit benevolent AI.

We cooperate with other people despite the risk of being exploited or hurt. If future artificial intelligence (AI) systems are benevolent and cooperative toward us, what will we do in return? Here we show that our cooperative dispositions are weaker when we interact with AI. In nine experiments, humans interacted with either another human or an AI agent in four classic social dilemma economic games and a newly designed game of Reciprocity that we introduce here. Contrary to the hypothesis that people mistrust algorithms, participants trusted their AI partners to be as cooperative as humans. However, they did not return AI's benevolence as much and exploited the AI more than humans. These findings warn that future self-driving cars or co-working robots, whose success depends on humans' returning their cooperativeness, run the risk of being exploited. This vulnerability calls not just for smarter machines but also better human-centered policies.

Assessing drivers of tropical and subtropical marine fish collapses of Brazilian Exclusive Economic Zone.

Overfishing is a concerning threat that can lead to the collapse of fish stocks. We assessed the combinations of factors, including biological traits, types of exploitation and responses to sea temperature and salinity changes, that drive species to collapse in the Brazilian Exclusive Economic Zone (EEZ) tropical and subtropical regions. We applied a catch-based method of stock classification and a catch time series of 61 years from 132 exploited fish species. Species were categorized as Collapsed, Overexploited, Fully Exploited or in Development, and we used a GAM analysis to understand their categorization over time. Furthermore, a Redundancy Analysis was developed to assess the species characteristics that best predicted each exploitation category. Twelve species were classified as Collapsed, 55 as Overexploited, 46 as Fully Exploited and 19 as in Development. Tropical and subtropical exploited species collapses in Brazil were best explained by a complex combination of a negative impact of warmer sea temperatures, fishery exploitation and specific life-history traits. A synergistic interaction between these factors could bring species to collapse. We hypothesize that the exploitation of species with vulnerable traits may alter how these species respond to temperature and, therefore, lead them to collapse given that intense exploitation may affect their ability to respond to temperature increases. Measures to mitigate climate change impacts should take into consideration incentives to decrease the exploitation of vulnerable species and, specifically, consider species with more sensitive biological traits. Such measures are also important to minimize the socioeconomic impacts on the people that depend on these species.

The largest fish in the world's biggest river: Genetic connectivity and conservation of Arapaima gigas in the Amazon and Araguaia-Tocantins drainages.

Arapaima, pirarucu or paiche (Arapaima gigas) is one of the largest freshwater fish in the world, and has a long history of commercial exploitation in the Amazon region. To estimate levels of genetic variability and historical and recent connectivity in Arapaima, we examined variation in eleven microsatellite DNA markers in individuals from 22 localities in Brazil, Colombia, and Peru. The results of analysis of molecular variance, Bayesian clustering and discriminant analysis of principal components showed that Arapaima in our samples represents two major populations, one in the Amazonas and one in the Araguaia-Tocantins River basins. The Amazonas population is further structured by isolation-by-distance with the hydrologically largely unconnected Amapá locality representing the eastern-most extreme of this continuum; gene flow predominates at distances of less than 1500 km with localities separated by over 2000 km dominated by genetic drift and effectively forming different populations. We saw no evidence of multiple species of Arapaima in the Amazonas basin, and analysis of pairwise genetic divergence (FST) with Mantel tests and correlograms indicated that this largest population exhibits a large-scale pattern of isolation-by-distance, with which results from MIGRATE-N agreed. The degree and significance of genetic divergence indicates that most sampled localities represent demographically independent sub-populations, although we did identify several recent migration events between both proximal and more distant localities. The levels of genetic diversity were heterogeneous across sites, including low genetic diversity, effective population sizes, and evidence of genetic bottlenecks in several places. On average the levels of gene diversity and rarefied allelic richness were higher for localities along the Amazonas mainstem than in the tributaries, despite these being the areas of highest fishing pressure, while the lowest values were found in tributary headwaters, where landscape modification is a significant threat. We recommend that managers consider the regional and local threats to these populations and tailor strategies accordingly, strategies which should ensure the ability of young A. gigas to disperse through floodplain corridors to maintain genetic diversity among otherwise sedentary adult sub-populations.

Evidence of polygamy in the socially monogamous Amazonian fish Arapaima gigas (Schinz, 1822) (Osteoglossiformes, Arapaimidae)

Arapaima gigas is one of the largest freshwater fishes of the world. It is socially monogamous, forming pairs, constructing a nest and providing parental care. We performed a paternity analysis under three scenarios in captive, semi-natural and natural areas using 10 microsatellite markers. As a positive control, we analyzed three pairs and their offspring isolated individually in artificial breeding ponds (a priori very high probability of monogamy). We then analyzed two samples of offspring from large artificial ponds with multiple adults but only one reproductive pair (a priori high probability of monogamy), two samples from semi-natural breeding station with multiple adults but only one reproductive pair (a priori high probability of monogamy), and a sample from a natural lake with multiple adults, some potentially breeding (a priori medium probability of monogamy). Analysis of patterns of Mendelian heredity suggested an extra-pair contribution for all broods except the positive controls. Similarly, results based on multilocus analysis estimated at least two sib-groups per nest. These results reject monogamy as a system of breeding in Arapaima gigas. From a management perspective, this behavior may be exploited to maintain genetic diversity in captive and as well in wild populations of Arapaima gigas.

O pirarucu Arapaima gigas é um dos maiores peixes de água doce do mundo. É socialmente monogâmico, forma casais, constrói ninhos e fornece cuidado parental. Com o objetivo de acessar o sistema de acasalamento do pirarucu, analisamos três cenários: em áreas de cativeiro, semi-naturais e naturais, utilizando 10 marcadores microssatélites. Como controle positivo, analisamos três casais e suas ninhadas isolados em açudes individuais (probabilidade a priori muito alta de monogamia). A seguir, analisamos duas amostras de ninhadas de um açude com vários adultos, mas somente um casal reprodutivo (probabilidade a priori alta de monogamia), duas amostras de estação de criação semi-natural com vários adultos mas somente um casal reprodutivo (probabilidade a priori alta de monogamia), e uma amostra de lago natural com vários adultos alguns potencialmente em fase de reprodução (probabilidade a priori média de monogamia). Análises de padrões mendelianos de hereditariedade sugerem contribuição extra-par para todas as ninhadas, exceto as do controle positivo. Similarmente, resultados baseados em análises multilocus realizadas no programa KINALYZER estimaram pelo menos dois grupos-irmãos por ninhada. Nossos resultados rejeitam a monogamia como sistema de acasalamento em Arapaima gigas. Da perspectiva de manejo, esse comportamento pode ser explorado para manter a diversidade genética em cativeiro assim como em populações naturais de Arapaima gigas.

Evidence of multiple paternity and cooperative parental care in the so called monogamous silver arowana Osteoglossum bicirrhosum (Osteoglossiformes: Osteoglossidae)

Monogamy is rare in fishes and is usually associated with elaborate parental care. When parental care is present in fishes, it is usually the male that is responsible, and it is believed that there is a relationship between the high energetic investment and the certainty of paternity (except in the case of sneaker males). Osteoglossum bicirrhosum is considered a monogamous fish, and has particular behavioral traits that permit the study of mating systems and parental care, such as male mouthbrooding. We investigated the genetic relationships of males with the broods found in their oral cavities in Osteoglossum samples collected in a natural environment in the lower Purus river basin, Amazonas, Brazil. Fourteen broods were analyzed for parentage (268 young and 14 adult males) using eight microsatellite loci. The results indicate that eleven broods show a monogamous system. In one brood, however, approximately 50% of the young were genetically compatible with being offspring of another male, and in another two broods, none of the subsampled young were compatible with the genotypes of the brooding male. The result of this first brood may be explained by the extra-parental contribution of a sneaker male, whereas cooperative parental care may explain the result in the other two broods. Monogamia é rara em peixes e está geralmente associada a cuidado parental elaborado. Quando cuidado parental está presente em peixes, usualmente o macho é responsável, e acredita-se que exista uma relação entre investimento energético elevado e a certeza da paternidade (exceto no caso de machos oportunistas). Osteoglossum bicirrhosum é considerado monogâmico e possui determinadas características comportamentais que permitem o estudo de sistemas de acasalamento e cuidado parental, como incubação bucal dos ovos e filhotes pelos machos. Quatorze ninhadas (268 filhotes e 14 machos adultos) foram coletadas em ambiente natural na bacia do baixo rio Purus, Amazonas, Brasil e analisadas para parentesco utilizando oito loci de microssatélites. Os resultados sugeriram, para onze ninhadas, um sistema de acasalamento monogâmico. Em uma ninhada, no entanto, cerca de 50% dos jovens eram geneticamente compatíveis como sendo descendentes de outro macho, e em outras duas ninhadas nenhum dos filhotes amostrados eram filhos dos machos que estavam realizando o cuidado. O resultado da primeira ninhada pode ser explicado pela contribuição extra-par de um macho oportunista, enquanto que o cuidado parental cooperativo pode explicar os resultados nas outras duas ninhadas.