Direct route to reproducing pair distribution functions with coarse-grained models via transformed atomistic cross correlations.

Coarse-grained (CG) models are often parameterized to reproduce one-dimensional structural correlation functions of an atomically detailed model along the degrees of freedom governing each interaction potential. While cross correlations between these degrees of freedom inform the optimal set of interaction parameters, the correlations generated from the higher-resolution simulations are often too complex to act as an accurate proxy for the CG correlations. Instead, the most popular methods determine the interaction parameters iteratively while assuming that individual interactions are uncorrelated. While these iterative methods have been validated for a wide range of systems, they also have disadvantages when parameterizing models for multicomponent systems or when refining previously established models to better reproduce particular structural features. In this work, we propose two distinct approaches for the direct (i.e., noniterative) parameterization of a CG model by adjusting the high-resolution cross correlations of an atomistic model in order to more accurately reflect correlations that will be generated by the resulting CG model. The derived models more accurately describe the low-order structural features of the underlying AA model while necessarily generating inherently distinct cross correlations compared with the atomically detailed reference model. We demonstrate the proposed methods for a one-site-per-molecule representation of liquid water, where pairwise interactions are incapable of reproducing the true tetrahedral solvation structure. We then investigate the precise role that distinct cross-correlation features play in determining the correct pair correlation functions, evaluating the importance of the placement of correlation features as well as the balance between features appearing in different solvation shells.

Influence of ligand architecture on oxidation reactions by high-valent nonheme manganese oxo complexes using water as a source of oxygen.

Mononuclear nonheme Mn(IV)=O complexes with two isomers of a bispidine ligand have been synthesized and characterized by various spectroscopies and density functional theory (DFT). The Mn(IV)=O complexes show reactivity in oxidation reactions (hydrogen-atom abstraction and sulfoxidation). Interestingly, one of the isomers (L(1) ) is significantly more reactive than the other (L(2) ), while in the corresponding Fe(IV)=O based oxidation reactions the L(2) -based system was previously found to be more reactive than the L(1) -based catalyst. This inversion of reactivities is discussed on the basis of DFT and molecular mechanics (MM) model calculations, which indicate that the order of reactivities are primarily due to a switch of reaction channels (σ versus π) and concomitant steric effects.

Water-soluble cruciforms and distyrylbenzenes: synthesis, characterization, and pH-dependent amine-sensing properties.

Three water-soluble fluorescent aldehyde-substituted distyrylbenzene derivatives were prepared using Heck or Horner methodologies. Water solubility was achieved through the addition of branched oligoethylene glycol side chains; these are attached via an ether bridge to the aromatic nucleus. The aldehydes are almost nonfluorescent in water, but addition of primary amines turns the fluorescence on; formation of imines results. Control of the basicity of the media allows further discrimination of the analytes employed. 1,3-Diaminopropane reacts with these aldehydes. Instead of an imine, a brightly fluorescent aminal forms. Amino acids are almost always nonreactive toward these aldehydes. Exceptions are lysine and cysteine, which form an imine and a thioaminal, respectively, discreating the aldehyde unit under fluorescence turn-on in water. The detection limit and time of completion of the sensing event were evaluated. Dialdehydes 3 and 16 were comparable on both counts. The cross-shaped 16 did react approximately twice as quickly with 1,3-diaminopropane.