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1.
Artif Organs ; 47(10): 1581-1591, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37395735

RESUMO

BACKGROUND: Extracorporeal life support (ECLS) has extensive applications in managing patients with acute cardiac and pulmonary failure. Two primary modalities of ECLS, cardiopulmonary bypass (CPB) and extracorporeal membrane oxygenation (ECMO), include several similarities in their composition, complications, and patient outcomes. Both CPB and ECMO pose a high risk of thrombus formation and platelet activation due to the large surface area of the devices and bleeding due to system anticoagulation. Therefore, novel methods of anticoagulation are needed to reduce the morbidity and mortality associated with extracorporeal support. Nitric oxide (NO) has potent antiplatelet properties and presents a promising alternative or addition to anticoagulation with heparin during extracorporeal support. METHODS: We developed two ex vivo models of CPB and ECMO to investigate NO effects on anticoagulation and inflammation in these systems. RESULTS: Sole addition of NO as an anticoagulant was not successful in preventing thrombus formation in the ex vivo setups, therefore a combination of low-level heparin with NO was used. Antiplatelet effects were observed in the ex vivo ECMO model when NO was delivered at 80 ppm. Platelet count was preserved after 480 min when NO was delivered at 30 ppm. CONCLUSION: Combined delivery of NO and heparin did not improve haemocompatibility in either ex vivo model of CPB and ECMO. Anti-inflammatory effects of NO in ECMO systems have to be evaluated further.


Assuntos
Oxigenação por Membrana Extracorpórea , Trombose , Humanos , Oxigenação por Membrana Extracorpórea/efeitos adversos , Oxigenação por Membrana Extracorpórea/métodos , Óxido Nítrico/uso terapêutico , Ponte Cardiopulmonar/efeitos adversos , Ponte Cardiopulmonar/métodos , Anticoagulantes/farmacologia , Anticoagulantes/uso terapêutico , Heparina/farmacologia , Heparina/uso terapêutico , Trombose/etiologia , Trombose/prevenção & controle , Inflamação/etiologia , Inflamação/prevenção & controle
2.
Traffic ; 19(2): 105-110, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29159991

RESUMO

Visualization of scientific data is crucial not only for scientific discovery but also to communicate science and medicine to both experts and a general audience. Until recently, we have been limited to visualizing the three-dimensional (3D) world of biology in 2 dimensions. Renderings of 3D cells are still traditionally displayed using two-dimensional (2D) media, such as on a computer screen or paper. However, the advent of consumer grade virtual reality (VR) headsets such as Oculus Rift and HTC Vive means it is now possible to visualize and interact with scientific data in a 3D virtual world. In addition, new microscopic methods provide an unprecedented opportunity to obtain new 3D data sets. In this perspective article, we highlight how we have used cutting edge imaging techniques to build a 3D virtual model of a cell from serial block-face scanning electron microscope (SBEM) imaging data. This model allows scientists, students and members of the public to explore and interact with a "real" cell. Early testing of this immersive environment indicates a significant improvement in students' understanding of cellular processes and points to a new future of learning and public engagement. In addition, we speculate that VR can become a new tool for researchers studying cellular architecture and processes by populating VR models with molecular data.


Assuntos
Células/ultraestrutura , Compreensão/fisiologia , Software , Análise e Desempenho de Tarefas , Realidade Virtual , Humanos , Imageamento Tridimensional , Interface Usuário-Computador
3.
Cell Microbiol ; 19(12)2017 12.
Artigo em Inglês | MEDLINE | ID: mdl-28778116

RESUMO

Caveolae are composed of 2 major proteins, caveolin 1 (CAV1) and cavin 1 or polymerase transcript release factor I (CAVIN1). Here, we demonstrate that CAV1 levels modulate invasion of Group A Streptococcus (GAS) into nonphagocytic mammalian cells. GAS showed enhanced internalisation into CAV1-knockout mouse embryonic fibroblasts and CAV1 knockdown human epithelial HEp-2 cells, whereas overexpression of CAV1 in HEp-2 cells reduced GAS invasion. This effect was not dependent on the expression of the GAS fibronectin binding protein SfbI, which had previously been implicated in caveolae-mediated uptake. Nor was this effect dependent on CAVIN1, as knockout of CAVIN1 in mouse embryonic fibroblasts resulted in reduced GAS internalisation. Although CAV1 restricted GAS invasion into host cells, we observed only minimal association of invading GAS (strain M1T15448 ) with CAV1 by immunofluorescence and very low association of invading M1T15448 with caveolae by transmission electron microscopy. These observations suggest that physical interaction with caveolae is not needed for CAV1 restriction of invading GAS. An indirect mechanism of action is also consistent with the finding that changing membrane fluidity reverses the increased invasion observed in CAV1-null cells. Together, these results suggest that CAV1 protects host cells against GAS invasion by a caveola-independent mechanism.


Assuntos
Caveolina 1/metabolismo , Endocitose , Células Epiteliais/imunologia , Fibroblastos/imunologia , Fatores Imunológicos/metabolismo , Streptococcus pyogenes/imunologia , Animais , Linhagem Celular , Células Epiteliais/microbiologia , Fibroblastos/microbiologia , Humanos , Camundongos Knockout
4.
Plant Physiol ; 167(4): 1402-11, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25670815

RESUMO

Despite the rhizotoxicity of aluminum (Al) being identified over 100 years ago, there is still no consensus regarding the mechanisms whereby root elongation rate is initially reduced in the approximately 40% of arable soils worldwide that are acidic. We used high-resolution kinematic analyses, molecular biology, rheology, and advanced imaging techniques to examine soybean (Glycine max) roots exposed to Al. Using this multidisciplinary approach, we have conclusively shown that the primary lesion of Al is apoplastic. In particular, it was found that 75 µm Al reduced root growth after only 5 min (or 30 min at 30 µm Al), with Al being toxic by binding to the walls of outer cells, which directly inhibited their loosening in the elongation zone. An alteration in the biosynthesis and distribution of ethylene and auxin was a second, slower effect, causing both a transient decrease in the rate of cell elongation after 1.5 h but also a longer term gradual reduction in the length of the elongation zone. These findings show the importance of focusing on traits related to cell wall composition as well as mechanisms involved in wall loosening to overcome the deleterious effects of soluble Al.


Assuntos
Alumínio/metabolismo , Glycine max/metabolismo , Reguladores de Crescimento de Plantas/metabolismo , Raízes de Plantas/efeitos dos fármacos , Alumínio/toxicidade , Transporte Biológico , Parede Celular/metabolismo , Etilenos/metabolismo , Genes Reporter , Ácidos Indolacéticos/metabolismo , Raízes de Plantas/citologia , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/metabolismo , Plântula/citologia , Plântula/efeitos dos fármacos , Plântula/crescimento & desenvolvimento , Plântula/metabolismo , Glycine max/citologia , Glycine max/efeitos dos fármacos , Glycine max/crescimento & desenvolvimento
5.
J Immunol ; 192(4): 1718-31, 2014 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-24453257

RESUMO

Genital tract carriage of group B streptococcus (GBS) is prevalent among adult women; however, the dynamics of chronic GBS genital tract carriage, including how GBS persists in this immunologically active host niche long term, are not well defined. To our knowledge, in this study, we report the first animal model of chronic GBS genital tract colonization using female mice synchronized into estrus by delivery of 17ß-estradiol prior to intravaginal challenge with wild-type GBS 874391. Cervicovaginal swabs, which were used to measure bacterial persistence, showed that GBS colonized the vaginal mucosa of mice at high numbers (10(6)-10(7) CFU/swab) for at least 90 d. Cellular and histological analyses showed that chronic GBS colonization of the murine genital tract caused significant lymphocyte and PMN cell infiltrates, which were localized to the vaginal mucosal surface. Long-term colonization was independent of regular hormone cycling. Immunological analyses of 23 soluble proteins related to chemotaxis and inflammation showed that the host response to GBS in the genital tract comprised markers of innate immune activation including cytokines such as GM-CSF and TNF-α. A nonhemolytic isogenic mutant of GBS 874391, Δcyle9, was impaired for colonization and was associated with amplified local PMN responses. Induction of DNA neutrophil extracellular traps, which was observed in GBS-infected human PMNs in vitro in a hemolysin-dependent manner, appeared to be part of this response. Overall, this study defines key infection dynamics in a novel murine model of chronic GBS genital tract colonization and establishes previously unknown cellular and soluble defense responses to GBS in the female genital tract.


Assuntos
Proteínas Hemolisinas/metabolismo , Infecções do Sistema Genital/imunologia , Streptococcus agalactiae/imunologia , Vagina/imunologia , Animais , Biomarcadores , Movimento Celular/imunologia , Citocinas/metabolismo , Modelos Animais de Doenças , Estradiol/metabolismo , Feminino , Fator Estimulador de Colônias de Granulócitos e Macrófagos/metabolismo , Humanos , Inflamação/imunologia , Camundongos , Camundongos Endogâmicos C57BL , Neutrófilos/imunologia , Infecções do Sistema Genital/microbiologia , Infecções Estreptocócicas/imunologia , Infecções Estreptocócicas/microbiologia , Streptococcus agalactiae/metabolismo , Fator de Necrose Tumoral alfa/metabolismo , Vagina/microbiologia
6.
BMC Microbiol ; 14: 314, 2014 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-25495654

RESUMO

BACKGROUND: Forestomach fermentation in Australian marsupials such as wallabies and kangaroos, though analogous to rumen fermentation, results in lower methane emissions. Insights into hydrogenotrophy in these systems could help in devising strategies to reduce ruminal methanogenesis. Reductive acetogenesis may be a significant hydrogen sink in these systems and previous molecular analyses have revealed a novel diversity of putative acetogens in the tammar wallaby forestomach. RESULTS: Methanogen-inhibited enrichment cultures prepared from tammar wallaby forestomach contents consumed hydrogen and produced primarily acetate. Functional gene (formyltetrahydrofolate synthetase and acetyl-CoA synthase) analyses revealed a restricted diversity of Clostridiales species as the putative acetogens in the cultures. A new acetogen (growth on H2/CO2 with acetate as primary end product) designated isolate TWA4, was obtained from the cultures. Isolate TWA4 classified within the Lachnospiraceae and demonstrated >97% rrs identity to previously isolated kangaroo acetogens. Isolate TWA4 was a potent hydrogenotroph and demonstrated excellent mixotrophic growth (concomitant consumption of hydrogen during heterotrophic growth) with glycerol. Mixotrophic growth of isolate TWA4 on glycerol resulted in increased cell densities and acetate production compared to autotrophic growth. Co-cultures with an autotrophic methanogen Methanobrevibacter smithii revealed that isolate TWA4 performed reductive acetogenesis under high hydrogen concentration (>5 mM), but not at low concentrations. Under heterotrophic growth conditions, isolate TWA4 did not significantly stimulate methanogenesis in a co-culture with M. smithii contrary to the expectation for organisms growing fermentatively. CONCLUSIONS: The unique properties of tammar wallaby acetogens might be contributing factors to reduced methanogen numbers and methane emissions from tammar wallaby forestomach fermentation, compared to ruminal fermentation. The macropod forestomach may be a useful source of acetogens for future strategies to reduce methane emissions from ruminants, particularly if these strategies also include some level of methane suppression and/or acetogen stimulation, for example by harnessing mixotrophic growth capabilities.


Assuntos
Acetatos/metabolismo , Bactérias Anaeróbias/isolamento & purificação , Bactérias Anaeróbias/metabolismo , Bactérias Gram-Positivas/isolamento & purificação , Bactérias Gram-Positivas/metabolismo , Macropodidae/microbiologia , Estômago/microbiologia , Animais , Bactérias Anaeróbias/classificação , Bactérias Anaeróbias/genética , DNA Bacteriano/química , DNA Bacteriano/genética , Genes de RNAr , Glicerol/metabolismo , Bactérias Gram-Positivas/classificação , Bactérias Gram-Positivas/genética , Hidrogênio/metabolismo , Dados de Sequência Molecular , Análise de Sequência de DNA
7.
J Immunol ; 188(2): 781-92, 2012 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-22184725

RESUMO

Early transcriptional activation events that occur in bladder immediately following bacterial urinary tract infection (UTI) are not well defined. In this study, we describe the whole bladder transcriptome of uropathogenic Escherichia coli (UPEC) cystitis in mice using genome-wide expression profiling to define the transcriptome of innate immune activation stemming from UPEC colonization of the bladder. Bladder RNA from female C57BL/6 mice, analyzed using 1.0 ST-Affymetrix microarrays, revealed extensive activation of diverse sets of innate immune response genes, including those that encode multiple IL-family members, receptors, metabolic regulators, MAPK activators, and lymphocyte signaling molecules. These were among 1564 genes differentially regulated at 2 h postinfection, highlighting a rapid and broad innate immune response to bladder colonization. Integrative systems-level analyses using InnateDB (http://www.innatedb.com) bioinformatics and ingenuity pathway analysis identified multiple distinct biological pathways in the bladder transcriptome with extensive involvement of lymphocyte signaling, cell cycle alterations, cytoskeletal, and metabolic changes. A key regulator of IL activity identified in the transcriptome was IL-10, which was analyzed functionally to reveal marked exacerbation of cystitis in IL-10-deficient mice. Studies of clinical UTI revealed significantly elevated urinary IL-10 in patients with UPEC cystitis, indicating a role for IL-10 in the innate response to human UTI. The whole bladder transcriptome presented in this work provides new insight into the diversity of innate factors that determine UTI on a genome-wide scale and will be valuable for further data mining. Identification of protective roles for other elements in the transcriptome will provide critical new insight into the complex cascade of events that underpin UTI.


Assuntos
Cistite/genética , Cistite/imunologia , Infecções por Escherichia coli/genética , Infecções por Escherichia coli/imunologia , Imunidade Inata , Interleucina-10/biossíntese , Transcriptoma/imunologia , Escherichia coli Uropatogênica/imunologia , Animais , Técnicas de Cocultura , Cistite/prevenção & controle , Modelos Animais de Doenças , Infecções por Escherichia coli/prevenção & controle , Feminino , Proteínas de Fímbrias/genética , Proteínas de Fímbrias/metabolismo , Humanos , Imunidade Inata/genética , Interleucina-10/sangue , Interleucina-10/deficiência , Interleucina-10/metabolismo , Camundongos , Camundongos da Linhagem 129 , Camundongos Endogâmicos C57BL , Camundongos Endogâmicos CBA , Camundongos Knockout , Transdução de Sinais/genética , Transdução de Sinais/imunologia , Transcriptoma/genética , Células U937 , Escherichia coli Uropatogênica/genética , Escherichia coli Uropatogênica/patogenicidade , Urotélio/imunologia , Urotélio/microbiologia , Urotélio/patologia
8.
Physiol Plant ; 148(4): 538-48, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23368900

RESUMO

Maintaining a high rate of water uptake is crucial for maximum longevity of cut stems. Physiological gel/tylosis formation decreases water transport efficiency in the xylem. The primary mechanism of action for post-harvest Cu(2+) treatments in improving cut flower and foliage longevity has been elusive. The effect of Cu(2+) on wound-induced xylem vessel occlusion was investigated for Acacia holosericea A. Cunn. ex G. Don. Experiments were conducted using a Cu(2+) pulse (5 h, 2.2 mM) and a Cu(2+) vase solution (0.5 mM) vs a deionized water (DIW) control. Development of xylem blockage in the stem-end region 10 mm proximal to the wounded stem surface was examined over 21 days by light and transmission electron microscopy. Xylem vessels of stems stood into DIW were occluded with gels secreted into vessel lumens via pits from surrounding axial parenchyma cells. Gel secretion was initiated within 1-2 days post-wounding and gels were detected in the xylem from day 3. In contrast, Cu(2+) treatments disrupted the surrounding parenchyma cells, thereby inhibiting gel secretion and maintaining the vessel lumens devoid of occlusions. The Cu(2+) treatments significantly improved water uptake by the cut stems as compared to the control.


Assuntos
Acacia/fisiologia , Cobre/toxicidade , Géis/metabolismo , Caules de Planta/fisiologia , Água/fisiologia , Xilema/fisiologia , Acacia/efeitos dos fármacos , Acacia/ultraestrutura , Biomassa , Caules de Planta/citologia , Caules de Planta/efeitos dos fármacos , Caules de Planta/crescimento & desenvolvimento , Caules de Planta/ultraestrutura , Xilema/citologia , Xilema/efeitos dos fármacos , Xilema/ultraestrutura
9.
Physiol Plant ; 147(4): 453-64, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22892034

RESUMO

The phytotoxicity of Mn is important globally due to its increased solubility in acid or waterlogged soils. Short-term (≤24 h) solution culture studies with 150 µM Mn were conducted to investigate the in situ distribution and speciation of Mn in apical tissues of hydrated roots of cowpea [Vigna unguiculata (L.) Walp. cv. Red Caloona] using synchrotron-based techniques. Accumulation of Mn was rapid; exposure to 150 µM Mn for only 5 min resulting in substantial Mn accumulation in the root cap and associated mucigel. The highest tissue concentrations of Mn were in the root cap, with linear combination fitting of the data suggesting that ≥80% of this Mn(II) was associated with citrate. Interestingly, although the primary site of Mn toxicity is typically the shoots, concentrations of Mn in the stele of the root were not noticeably higher than in the surrounding cortical tissues in the short-term (≤24 h). The data provided here from the in situ analyses of hydrated roots exposed to excess Mn are, to our knowledge, the first of this type to be reported for Mn and provide important information regarding plant responses to high Mn in the rooting environment.


Assuntos
Fabaceae/efeitos dos fármacos , Manganês/farmacocinética , Manganês/toxicidade , Raízes de Plantas/crescimento & desenvolvimento , Relação Dose-Resposta a Droga , Fabaceae/crescimento & desenvolvimento , Fabaceae/metabolismo , Microscopia de Fluorescência , Raízes de Plantas/efeitos dos fármacos , Raízes de Plantas/metabolismo , Síncrotrons , Espectroscopia por Absorção de Raios X
10.
Antonie Van Leeuwenhoek ; 104(4): 533-46, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23959164

RESUMO

Planctomycetes are ubiquitous in marine environment and were reported to occur in association with multicellular eukaryotic organisms such as marine macroalgae and invertebrates. Here, we investigate planctomycetes associated with the marine sponge Niphates sp. from the sub-tropical Australian coast by assessing their diversity using culture-dependent and -independent approaches based on the 16S rRNA gene. The culture-dependent approach resulted in the isolation of a large collection of diverse planctomycetes including some novel lineages of Planctomycetes from the sponge as well as sediment and seawater of Moreton Bay where this sponge occurs. The characterization of these novel planctomycetes revealed that cells of one unique strain do not possess condensed nucleoids, a phenotype distinct from other planctomycetes. In addition, a culture-independent clone library approach identified unique planctomycete 16S rRNA gene sequences closely related to other sponge-derived sequences. The analysis of tissue of the sponge Niphates sp. showed that the mesohyl of the sponge is almost devoid of microbial cells, indicating this species is in the group of 'low microbial abundant' (LMA) sponges. The unique planctomycete 16S rRNA gene sequences identified in this study were phylogenetically closely related to sequences from LMA sponges in other published studies. This study has revealed new insights into the diversity of planctomycetes in the marine environment and the association of planctomycetes with marine sponges.


Assuntos
Bactérias/classificação , Bactérias/genética , Poríferos/microbiologia , Animais , Austrália , Bactérias/ultraestrutura , Baías/microbiologia , Sedimentos Geológicos/microbiologia , Filogenia , Poríferos/ultraestrutura , RNA Ribossômico 16S , Água do Mar/microbiologia
11.
Proc Natl Acad Sci U S A ; 107(29): 12883-8, 2010 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-20566852

RESUMO

Endocytosis is a process by which extracellular material such as macromolecules can be incorporated into cells via a membrane-trafficking system. Although universal among eukaryotes, endocytosis has not been identified in Bacteria or Archaea. However, intracellular membranes are known to compartmentalize cells of bacteria in the phylum Planctomycetes, suggesting the potential for endocytosis and membrane trafficking in members of this phylum. Here we show that cells of the planctomycete Gemmata obscuriglobus have the ability to uptake proteins present in the external milieu in an energy-dependent process analogous to eukaryotic endocytosis, and that internalized proteins are associated with vesicle membranes. Occurrence of such ability in a bacterium is consistent with autogenous evolution of endocytosis and the endomembrane system in an ancestral noneukaryote cell.


Assuntos
Bactérias/citologia , Bactérias/metabolismo , Proteínas de Bactérias/metabolismo , Endocitose , Bactérias/ultraestrutura , Evolução Biológica , Compartimento Celular , DNA Bacteriano/metabolismo , Metabolismo Energético , Proteínas de Fluorescência Verde , Processamento de Proteína Pós-Traducional , Vesículas Transportadoras/ultraestrutura
12.
Infect Immun ; 80(9): 3145-60, 2012 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-22733575

RESUMO

The most common causes of urinary tract infections (UTIs) are Gram-negative pathogens such as Escherichia coli; however, Gram-positive organisms, including Streptococcus agalactiae, or group B streptococcus (GBS), also cause UTI. In GBS infection, UTI progresses to cystitis once the bacteria colonize the bladder, but the host responses triggered in the bladder immediately following infection are largely unknown. Here, we used genome-wide expression profiling to map the bladder transcriptome of GBS UTI in mice infected transurethrally with uropathogenic GBS that was cultured from a 35-year-old women with cystitis. RNA from bladders was applied to Affymetrix Gene-1.0ST microarrays; quantitative reverse transcriptase PCR (qRT-PCR) was used to analyze selected gene responses identified in array data sets. A surprisingly small significant-gene list of 172 genes was identified at 24 h; this compared to 2,507 genes identified in a side-by-side comparison with uropathogenic E. coli (UPEC). No genes exhibited significantly altered expression at 2 h in GBS-infected mice according to arrays despite high bladder bacterial loads at this early time point. The absence of a marked early host response to GBS juxtaposed with broad-based bladder responses activated by UPEC at 2 h. Bioinformatics analyses, including integrative system-level network mapping, revealed multiple activated biological pathways in the GBS bladder transcriptome that regulate leukocyte activation, inflammation, apoptosis, and cytokine-chemokine biosynthesis. These findings define a novel, minimalistic type of bladder host response triggered by GBS UTI, which comprises collective antimicrobial pathways that differ dramatically from those activated by UPEC. Overall, this study emphasizes the unique nature of bladder immune activation mechanisms triggered by distinct uropathogens.


Assuntos
Infecções por Escherichia coli/imunologia , Interações Hospedeiro-Patógeno , Infecções Estreptocócicas/imunologia , Infecções Urinárias/imunologia , Infecções Urinárias/microbiologia , Adulto , Animais , Escherichia coli/imunologia , Feminino , Perfilação da Expressão Gênica , Humanos , Camundongos , Camundongos Endogâmicos C57BL , Análise em Microsséries , Reação em Cadeia da Polimerase em Tempo Real , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Streptococcus agalactiae/imunologia , Fatores de Tempo
13.
Plant Physiol ; 156(2): 663-73, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21525332

RESUMO

The phytotoxicity of trace metals is of global concern due to contamination of the landscape by human activities. Using synchrotron-based x-ray fluorescence microscopy and x-ray absorption spectroscopy, the distribution and speciation of copper (Cu), nickel (Ni), and zinc (Zn) was examined in situ using hydrated roots of cowpea (Vigna unguiculata) exposed to 1.5 µm Cu, 5 µm Ni, or 40 µm Zn for 1 to 24 h. After 24 h of exposure, most Cu was bound to polygalacturonic acid of the rhizodermis and outer cortex, suggesting that binding of Cu to walls of cells in the rhizodermis possibly contributes to the toxic effects of Cu. When exposed to Zn, cortical concentrations remained comparatively low with much of the Zn accumulating in the meristematic region and moving into the stele; approximately 60% to 85% of the total Zn stored as Zn phytate within 3 h of exposure. While Ni concentrations were high in both the cortex and meristem, concentrations in the stele were comparatively low. To our knowledge, this is the first report of the in situ distribution and speciation of Cu, Ni, and Zn in hydrated (and fresh) plant tissues, providing valuable information on the potential mechanisms by which they are toxic.


Assuntos
Cobre/toxicidade , Fabaceae/efeitos dos fármacos , Níquel/toxicidade , Raízes de Plantas/efeitos dos fármacos , Água/farmacologia , Zinco/toxicidade , Cobre/metabolismo , Fabaceae/crescimento & desenvolvimento , Microscopia de Fluorescência , Níquel/metabolismo , Raízes de Plantas/crescimento & desenvolvimento , Espectroscopia por Absorção de Raios X , Zinco/metabolismo
14.
Traffic ; 10(2): 131-6, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19054388

RESUMO

The zebrafish is a powerful vertebrate system for cell and developmental studies. In this study, we have optimized methods for fast freezing and processing of zebrafish embryos for electron microscopy (EM). We show that in the absence of primary chemical fixation, excellent ultrastructure, preservation of green fluorescent protein (GFP) fluorescence, immunogold labelling and electron tomography can be obtained using a single technique involving high-pressure freezing and embedding in Lowicryl resins at low temperature. As well as being an important new tool for zebrafish research, the maintenance of GFP fluorescence after fast freezing, freeze substitution and resin embedding will be of general use for correlative light and EM of biological samples.


Assuntos
Criopreservação/métodos , Microscopia/métodos , Tomografia/métodos , Peixe-Zebra/embriologia , Animais
15.
Mol Microbiol ; 77(3): 701-15, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20545867

RESUMO

Anaerobic ammonium-oxidizing (anammox) bacteria are divided into three compartments by bilayer membranes (from out- to inside): paryphoplasm, riboplasm and anammoxosome. It is proposed that the anammox reaction is performed by proteins located in the anammoxosome and on its membrane giving rise to a proton-motive-force and subsequent ATP synthesis by membrane-bound ATPases. To test this hypothesis, we investigated the location of membrane-bound ATPases in the anammox bacterium 'Candidatus Kuenenia stuttgartiensis'. Four ATPase gene clusters were identified in the K. stuttgartiensis genome: one typical F-ATPase, two atypical F-ATPases and a prokaryotic V-ATPase. K. stuttgartiensis transcriptomic and proteomic analysis and immunoblotting using antisera directed at catalytic subunits of the ATPase gene clusters indicated that only the typical F-ATPase gene cluster most likely encoded a functional ATPase under these cultivation conditions. Immunogold localization showed that the typical F-ATPase was predominantly located on both the outermost and anammoxosome membrane and to a lesser extent on the middle membrane. This is consistent with the anammox physiology model, and confirms the status of the outermost cell membrane as cytoplasmic membrane. The occurrence of ATPase in the anammoxosome membrane suggests that anammox bacteria have evolved a prokaryotic organelle; a membrane-bounded compartment with a specific cellular function: energy metabolism.


Assuntos
Adenosina Trifosfatases/metabolismo , Bactérias/enzimologia , Proteínas de Bactérias/metabolismo , Membrana Celular/enzimologia , Compostos de Amônio Quaternário/metabolismo , Adenosina Trifosfatases/genética , Anaerobiose , Bactérias/genética , Bactérias/metabolismo , Proteínas de Bactérias/genética , Membrana Celular/genética , Membrana Celular/metabolismo , Dados de Sequência Molecular , Transporte Proteico
16.
Curr Microbiol ; 63(4): 392-401, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21850475

RESUMO

Yeasts associate with numerous insects, and they can assist the metabolic processes within their hosts. Two distinct yeasts were identified by PCR within the planthopper Perkinsiella saccharicida, the vector of Fiji disease virus to sugarcane. The utility of both microbes for potential paratransgenic approaches to control Fiji leaf gall (FLG) was assessed. Phylogenetic analysis showed one of the microbes is related to yeast-like symbionts from the planthoppers: Laodelphax striatellus, Nilaparvata lugens, and Sogetella furcifera. The second yeast was a member of the Candida genus, a group that has been identified in beetles and recently described in planthoppers. Microscopy revealed the presence of yeast in the fat body of P. saccharicida. The Candida yeast was cultured, and transformation was accomplished by electroporation of Candida albicans codon optimized plasmids, designed to integrate into the genome via homologous recombination. Transgenic lines conferred resistance to the antibiotic nourseothricin and expression of green fluorescent protein was observed in a proportion of the yeast cells. Stably transformed yeast lines could not be isolated as the integrative plasmids presumably replicated within the yeast without integration into the genome. If stable transformation can be achieved, then this yeast may be useful as an agent for a paratransgenic control of FLG.


Assuntos
Hemípteros/microbiologia , Doenças das Plantas/prevenção & controle , Doenças das Plantas/virologia , Reoviridae/fisiologia , Saccharum/virologia , Leveduras/isolamento & purificação , Animais , Hemípteros/fisiologia , Hemípteros/virologia , Insetos Vetores/microbiologia , Insetos Vetores/fisiologia , Insetos Vetores/virologia , Dados de Sequência Molecular , Controle Biológico de Vetores , Filogenia , Folhas de Planta/virologia , Reoviridae/genética , Simbiose , Leveduras/classificação , Leveduras/genética , Leveduras/fisiologia
17.
Proc Natl Acad Sci U S A ; 105(11): 4524-9, 2008 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-18334638

RESUMO

Nitrogen is quantitatively the most important nutrient that plants acquire from the soil. It is well established that plant roots take up nitrogen compounds of low molecular mass, including ammonium, nitrate, and amino acids. However, in the soil of natural ecosystems, nitrogen occurs predominantly as proteins. This complex organic form of nitrogen is considered to be not directly available to plants. We examined the long-held view that plants depend on specialized symbioses with fungi (mycorrhizas) to access soil protein and studied the woody heathland plant Hakea actites and the herbaceous model plant Arabidopsis thaliana, which do not form mycorrhizas. We show that both species can use protein as a nitrogen source for growth without assistance from other organisms. We identified two mechanisms by which roots access protein. Roots exude proteolytic enzymes that digest protein at the root surface and possibly in the apoplast of the root cortex. Intact protein also was taken up into root cells most likely via endocytosis. These findings change our view of the spectrum of nitrogen sources that plants can access and challenge the current paradigm that plants rely on microbes and soil fauna for the breakdown of organic matter.


Assuntos
Arabidopsis/metabolismo , Nitrogênio/metabolismo , Proteaceae/metabolismo , Proteínas/metabolismo , Arabidopsis/crescimento & desenvolvimento , Microscopia Eletrônica , Raízes de Plantas/enzimologia , Raízes de Plantas/ultraestrutura , Proteaceae/crescimento & desenvolvimento , Proteaceae/ultraestrutura , Proteínas/química
18.
J Infect Dis ; 201(6): 866-70, 2010 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-20132033

RESUMO

Group B Streptococcus (GBS) causes urinary tract infections, but the pathogenic mechanisms underlying GBS urinary tract infections are unknown. We investigated whether uropathogenic GBS can bind to bladder uroepithelium to initiate urinary tract infection. Uropathogenic GBS isolated from a patient with acute cystitis bound to human T24 bladder uroepithelial cells in close association with F-actin in statistically significantly higher numbers compared with nonuropathogenic GBS. In vivo modeling using transurethrally infected mice revealed superior fitness of uropathogenic GBS for bladder colonization and potent uropathogenic GBS-specific up-regulation of interleukin 1alpha during infection. Thus, binding of uropathogenic GBS to uroepithelium and vigorous induction of interleukin 1alpha represents the initial stages of GBS urinary tract infection.


Assuntos
Interleucina-1alfa/biossíntese , Infecções Estreptocócicas/microbiologia , Streptococcus agalactiae/patogenicidade , Bexiga Urinária/microbiologia , Infecções Urinárias/microbiologia , Adulto , Animais , Ensaio de Imunoadsorção Enzimática , Epitélio/microbiologia , Feminino , Humanos , Interleucina-1alfa/genética , Camundongos , Camundongos Endogâmicos C57BL , Microscopia Confocal , Microscopia Eletrônica de Varredura , Pessoa de Meia-Idade , Infecções Estreptocócicas/imunologia , Bexiga Urinária/patologia , Infecções Urinárias/imunologia , Urina/microbiologia
19.
Elife ; 102021 04 27.
Artigo em Inglês | MEDLINE | ID: mdl-33904409

RESUMO

Genetic tags allow rapid localization of tagged proteins in cells and tissues. APEX, an ascorbate peroxidase, has proven to be one of the most versatile and robust genetic tags for ultrastructural localization by electron microscopy (EM). Here, we describe a simple method, APEX-Gold, which converts the diffuse oxidized diaminobenzidine reaction product of APEX into a silver/gold particle akin to that used for immunogold labelling. The method increases the signal-to-noise ratio for EM detection, providing unambiguous detection of the tagged protein, and creates a readily quantifiable particulate signal. We demonstrate the wide applicability of this method for detection of membrane proteins, cytoplasmic proteins, and cytoskeletal proteins. The method can be combined with different EM techniques including fast freezing and freeze substitution, focussed ion beam scanning EM, and electron tomography. Quantitation of expressed APEX-fusion proteins is achievable using membrane vesicles generated by a cell-free expression system. These membrane vesicles possess a defined quantum of signal, which can act as an internal standard for determination of the absolute density of expressed APEX-fusion proteins. Detection of fusion proteins expressed at low levels in cells from CRISPR-edited mice demonstrates the high sensitivity of the APEX-Gold method.


Assuntos
Tomografia com Microscopia Eletrônica/métodos , Técnicas Genéticas , Imageamento Tridimensional/métodos , Animais , Ascorbato Peroxidases , Congelamento , Ouro , Camundongos , Proteínas
20.
Mol Microbiol ; 73(6): 1009-19, 2009 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-19708922

RESUMO

Anammox bacteria are members of the phylum Planctomycetes that oxidize ammonium anaerobically and produce a significant part of the atmosphere's dinitrogen gas. They contain a unique bacterial organelle, the anammoxosome, which is the locus of anammox catabolism. While studying anammox cell and anammoxosome division with transmission electron microscopy including electron tomography, we observed a cell division ring in the outermost compartment of dividing anammox cells. In most Bacteria, GTP hydrolysis drives the tubulin-analogue FtsZ to assemble into a ring-like structure at the cell division site where it functions as a scaffold for the molecular machinery that performs cell division. However, the genome of the anammox bacterium 'Candidatus Kuenenia stuttgartiensis' does not encode ftsZ. Genomic analysis of open reading frames with potential GTPase activity indicated a possible novel cell division ring gene: kustd1438, which was unrelated to ftsZ. Immunogold localization specifically localized kustd1438 to the cell division ring. Genomic analyses of other members of the phyla Planctomycetes and Chlamydiae revealed no putative functional homologues of kustd1438, suggesting that it is specific to anammox bacteria. Electron tomography also revealed that the bacterial organelle was elongated along with the rest of the cell and divided equally among daughter cells during the cell division process.


Assuntos
Bactérias/ultraestrutura , Fenômenos Fisiológicos Bacterianos , Proteínas de Bactérias/metabolismo , Divisão Celular , Substâncias Macromoleculares , Organelas/ultraestrutura , Compostos de Amônio Quaternário/metabolismo , Anaerobiose , Bactérias/metabolismo , Tomografia com Microscopia Eletrônica , Ordem dos Genes , Genes Bacterianos , Microscopia Eletrônica de Transmissão , Microscopia Imunoeletrônica , Organelas/metabolismo , Oxirredução
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