Genome-Wide Survey and Characterization of Fatty Acid Desaturase Gene Family in Brassica napus and Its Parental Species.

Rapeseed (Brassica napus) is an important oilseed crop worldwide, and fatty acid (FA) compositions determine the nutritional and economic value of its seed oil. Fatty acid desaturases (FADs) play a pivotal role in regulating FA compositions, but to date, no comprehensive genome-wide analysis of FAD gene family in rapeseed and its parent species has been reported. In this study, using homology searches, 84, 45, and 44 FAD genes were identified in rapeseed, Brassica rapa, and Brassica oleracea genomes, respectively. These FAD genes were unevenly located in 17 chromosomes and 2 scaffolds of rapeseed, 9 chromosomes and 1 scaffold of B. rapa, and all the chromosomes of B. oleracea. Phylogenetic analysis showed that the soluble and membrane-bound FADs in the three Brassica species were divided into four and six subfamilies, respectively. Generally, the soluble FADs contained two conserved histidine boxes, while three highly conserved histidine boxes were harbored in membrane-bound FADs. Exon-intron structure, intron phase, and motif composition and position were highly conserved in each FAD subfamily. Putative subcellular locations of FAD proteins in three Brassica species were consistent with those of corresponding known FADs. In total, 25 of simple sequence repeat (SSR) loci were found in FAD genes of the three Brassica species. Transcripts of selected FAD genes in the three species were examined in various organs/tissues or stress treatments from NCBI expressed sequence tag (EST) database. This study provides a critical molecular basis for quality improvement of rapeseed oil and facilitates our understanding of key roles of FAD genes in plant growth and development and stress response.

Omega-3 fatty acid desaturase gene family from two ω-3 sources, Salvia hispanica and Perilla frutescens: Cloning, characterization and expression.

Omega-3 fatty acid desaturase (ω-3 FAD, D15D) is a key enzyme for α-linolenic acid (ALA) biosynthesis. Both chia (Salvia hispanica) and perilla (Perilla frutescens) contain high levels of ALA in seeds. In this study, the ω-3 FAD gene family was systematically and comparatively cloned from chia and perilla. Perilla FAD3, FAD7, FAD8 and chia FAD7 are encoded by single-copy (but heterozygous) genes, while chia FAD3 is encoded by 2 distinct genes. Only 1 chia FAD8 sequence was isolated. In these genes, there are 1 to 6 transcription start sites, 1 to 8 poly(A) tailing sites, and 7 introns. The 5'UTRs of PfFAD8a/b contain 1 to 2 purine-stretches and 2 pyrimidine-stretches. An alternative splice variant of ShFAD7a/b comprises a 5'UTR intron. Their encoded proteins harbor an FA_desaturase conserved domain together with 4 trans-membrane helices and 3 histidine boxes. Phylogenetic analysis validated their identity of dicot microsomal or plastidial ω-3 FAD proteins, and revealed some important evolutionary features of plant ω-3 FAD genes such as convergent evolution across different phylums, single-copy status in algae, and duplication events in certain taxa. The qRT-PCR assay showed that the ω-3 FAD genes of two species were expressed at different levels in various organs, and they also responded to multiple stress treatments. The functionality of the ShFAD3 and PfFAD3 enzymes was confirmed by yeast expression. The systemic molecular and functional features of the ω-3 FAD gene family from chia and perilla revealed in this study will facilitate their use in future studies on genetic improvement of ALA traits in oilseed crops.

Chia (Salvia hispanica) experiment at a 30˚ N site in Sichuan Basin, China / Performance agronômica da chia (Salvia hispanica) cultivada aos 30˚ N na Bacia de Sichuan, China

ABSTRACT: The mysterious ancient Mesoamerican Indian crop chia (Salvia hispanica) is revived and expanding worldwide due to its richness of valuable nutraceuticals such as α-linolenic acid (ALA), antioxidants, food fiber, gels, and proteins. We carried out a pilot experiment on chia planting in non-frost Sichuan Basin, at Hechuan Base (30˚0′ 43″ N, 106˚7′ 41″ E, 216 m), Southwest University, Chongqing, China. The split-plot trial contained two factors, 3 spring-summer sowing times as main plots, and 6 densities as subplots, with 3 replicates. Phenological, botanical, adversity, yield, and seed quality traits were investigated. Plants were very tall, suffered from lodging, and flowered in mid-October. Sichuan Basin can be considered as a north edge for growing chia, with low yield (680 kg/hectare) because of insufficient seed filling and maturation in autumn-winter season (1000-seed weight of 1.14 g). However, its ALA content is 5 percent points higher than the seed-donor commercial bottle (65.06%/63.96% VS 59.35%/59.74% for black/white seeds), accompanied by decrease oleic and stearic acid, while linoleic acid and palmitic acid are equivalent. Considering its short-day habit, it is recommended to try sowing in middle summer (from late June to early August) to avoid too long growing period, excessive vegetative growth, and waste of field and climate resources caused by spring-summer sowing. Furthermore, winter sowing of chia with mulch cover could also be tried, with an expectation of harvesting in summer. Most importantly, only when the photoperiod-insensitive early flowering stocks are created, chia can be recommended as a low-risk crop to the farmers of this region.

RESUMO: A chia (Salvia hispanica) é cultivada em todo o mundo por sua riqueza de nutrientes nutracêuticos valiosos, tais como a-ácido linolênico (ALA), antioxidantes, fibras alimentares, géis e proteínas. Entretanto, não há informações sobre sua performance agronômica se cultivada aos 30˚N na China. Assim, realizou-se um experimento com o cultivo de chia na base Hechuan (30°0'43"N, 106°7'41"E, 216m, que não apresenta geada) da Southwest University, Chongqing, China. O delineamento em parcela subdividida contém dois fatores,três épocas de semeadura na primavera-verão como parcelas principais e seis densidades de sementes como subparcelas, com três repetições. Foram investigados os caracteres fenológicos, botânicos, de adversidade, rendimento e qualidade da semente. As plantas se tornaram altas, acamarame floresceram em meados de outubro. A bacia de Sichuan pode ser considerada como uma fronteira limítrofe norte para o crescimento da chia, com baixo rendimento (680kg ha-1) devido ao enchimento e amadurecimento insuficientes na estação outono-inverno (peso de 1000 sementes de 1,14g). No entanto, o seu conteúdo de ALA é de 5 pontos percentuais mais elevado do que a semente comercial, 65,06%/63,96% contra 59,35%/59,74% para as sementes pretas/brancas, respectivamente, acompanhado por diminuição de ácido oleico e ácido esteárico, enquanto que o ácido linoleico e o ácido palmítico são equivalentes. Considerando o seu hábito de dia curto, recomenda-se semear no meio do verão,de junho a início de agosto, para evitar um tempo de cultivo muito longo, desenvolvimento vegetativo excessivo e desperdício de recursos de campo e clima causados pela semeadura de primavera-verão. Além disso, a semeadura de inverno da chia com cobertura morta também poderia ser realizada, com expectativa de colheita no verão. Mais importante ainda, somente quando os estoques de floração precoce insensíveis ao fotoperíodo são criados, pode-se recomendar como uma cultura de baixo risco para os agricultores desta região.