Genomic insights into the postintroduction failure of the Asian icefish Protosalanx chinensis in China.

Biological introductions provide a natural ecological experiment unfolding in a recent historical timeframe to elucidate how evolutionary processes (such as founder effects, genetic diversity and adaptation) shape the genomic landscape of populations postintroduction. The Asian icefish, Protosalanx chinensis, is an economically important fishery resource, deliberately introduced into dozens of provinces across China for decades. However, while invading and disturbing the local ecosystem, many introduced populations declined, disappearing mysteriously in a very short time. The way in which various evolutionary forces integrate to result in invasion failure of an introduced population remains unknown. Here, we performed whole-genome sequencing of 10 species from the Salangidae family and 70 Asian icefish (Protosalanx chinensis) individuals from 7 geographic populations in China, aiming to characterize the evolutionary fate of introduced populations. Our results show that compared to other Salangidae species, P. chinensis has low genetic diversity, potentially due to the long-lasting decline in population size. In a recently introducted population, Lugu lake, severe sampling effects and a strong bottleneck further deteriorated the genomic landscape. Although the introduced population showed signs of reduced genetic load, the purging selection efficiency was low. Our selective sweep analysis revealed site frequency changes in candidate genes, including gata1a and hoxd4b, which could be associated with a decrease in dissolved oxygen in the deep-water plateau lake. These findings caution against the widespread introduction of P. chinensis in China and lay the groundwork for future use of this economically species.

Diversity of life history and population connectivity of threadfin fish Eleutheronema tetradactylum along the coastal waters of Southern China.

Understanding the diversity of life history, life stage connectivity and population is essential to determine the spatial scale over which fish populations operate. Otolith microchemistry analysis is a powerful tool to elucidate the life history and population connectivity of fish, providing important insights to the natal origin and population structure. In this study, we used laser ablation inductively coupled plasma mass spectrometry to analyze the chemical composition of otoliths throughout the entire lifetime of endangered fourfinger threadfin species, Eleutheronema tetradactylum. We reconstructed the life history of E. tetradactylum from Southern China collected from different locations over a spatial scale of 1200 km. Sr:Ca and Ba:Ca ratios profiles from otolith core-to-edge analysis suggested two contrasting life history patterns. Based on the differences in early life stages, we identified some fish spending their first year in an estuarine environment with subsequent movement to marine coastal systems, while some fish remaining in the coastal systems throughout their entire early life history stages. The non-metric multi-dimensional scaling showed a strong overlap in otolith core elemental composition, indicating a large-scale connectivity in the life history of E. tetradactylum. The immature fish from different natal origins mixed to a large extent when they fed and overwintered in the extensive offshore waters. Clustering of near core chemistry pointed to three possible sources of nursery for the threadfin fish. This study demonstrated the diversity of life history patterns of E. tetradactylum in Southern Chinese waters. Restoration in egg and larvae densities in coastal waters and estuaries may enhance their population abundances.

Loss of Coilia nasus habitats in Chinese freshwater lakes: An otolith microchemistry assessment.

Loss of valued diadromous fishes and their habitats is one of the most critical problems in aquatic habitat connection and resource management worldwide. In China, the Poyang, Dongting, Gaobao, Gucheng, Dongping, and Taihu lakes were known to be historical migratory spawning sites of the anadromous estuarine tapertail anchovy Coilia nasus. However, except for Poyang Lake, it is believed that these lakes are no longer used by anadromous fish owing to overfishing, water pollution, and loss of connectivity. To confirm this assumption, we used an electron probe microanalyzer to analyze elemental strontium (Sr) and calcium (Ca) microchemical patterns in the otoliths of C. nasus individuals sampled from these lakes, in accordance with our previous analysis of the otolithic patterns of the same species sampled from habitat areas characterized by different salinity gradients. The results of line transect analysis of Sr/Ca ratios and Sr X-ray intensity maps of the otoliths indicated that all individuals from Dongting, Gaobao, Gucheng, Taihu, and Dongping lakes were characterized by a freshwater-resident life history. In contrast, individuals from Poyang Lake exhibited both freshwater-resident and anadromous life histories. The findings of this pilot study suggest that anadromous C. nasus can be found in Poyang Lake but are unlikely to be found in Dongting, Gaobao, Gucheng, Dongping, or Taihu lakes, despite these lakes being historical distribution areas or even spawning sites. This anchovy can possibly be used as a good model species for understanding the aforementioned global problem. Given that C. nasus is a commercially important species, restoration of its natural habitats and maintenance of their connections are recommended for its management and conservation.