Pediatric chest-abdomen-pelvis and abdomen-pelvis CT images with expert organ contours.

PURPOSE: Organ autosegmentation efforts to date have largely been focused on adult populations, due to limited availability of pediatric training data. Pediatric patients may present additional challenges for organ segmentation. This paper describes a dataset of 359 pediatric chest-abdomen-pelvis and abdomen-pelvis Computed Tomography (CT) images with expert contours of up to 29 anatomical organ structures to aid in the evaluation and development of autosegmentation algorithms for pediatric CT imaging. ACQUISITION AND VALIDATION METHODS: The dataset collection consists of axial CT images in Digital Imaging and Communications in Medicine (DICOM) format of 180 male and 179 female pediatric chest-abdomen-pelvis or abdomen-pelvis exams acquired from one of three CT scanners at Children's Wisconsin. The datasets represent random pediatric cases based upon routine clinical indications. Subjects ranged in age from 5 days to 16 years, with a mean age of 7 years. The CT acquisition, contrast, and reconstruction protocols varied across the scanner models and patients, with specifications available in the DICOM headers. Expert contours were manually labeled for up to 29 organ structures per subject. Not all contours are available for all subjects, due to limited field of view or unreliable contouring due to high noise. DATA FORMAT AND USAGE NOTES: The data are available on The Cancer Imaging Archive (TCIA_ (https://www.cancerimagingarchive.net/) under the collection Pediatric-CT-SEG. The axial CT image slices for each subject are available in DICOM format. The expert contours are stored in a single DICOM RTSTRUCT file for each subject. The contour names are listed in Table 2. POTENTIAL APPLICATIONS: This dataset will enable the evaluation and development of organ autosegmentation algorithms for pediatric populations, which exhibit variations in organ shape and size across age. Automated organ segmentation from CT images has numerous applications including radiation therapy, diagnostic tasks, surgical planning, and patient-specific organ dose estimation.

Validation of a deterministic linear Boltzmann transport equation solver for rapid CT dose computation using physical dose measurements in pediatric phantoms.

PURPOSE: The risk of inducing cancer to patients undergoing CT examinations has motivated efforts for CT dose estimation, monitoring, and reduction, especially among pediatric population. The method investigated in this study is Acuros CTD (Varian Medical Systems, Palo Alto, CA), a deterministic linear Boltzmann transport equation (LBTE) solver aimed at generating rapid and reliable dose maps of CT exams. By applying organ contours, organ doses can also be obtained, thus patient-specific organ dose estimates can be provided. This study experimentally validated Acuros against measurements performed on a clinical CT system using a range of physical pediatric anthropomorphic phantoms and acquisition protocols. METHODS: The study consisted of (1) the acquisition of dose measurements on a clinical CT scanner through thermoluminescent dosimeters (TLDs), and (2) the modeling in the Acuros platform of the measurement set up, which includes the modeling of the CT scanner and of the anthropomorphic phantoms. For the measurements, 1-year-old, 5-year-old, and 10-year-old anthropomorphic phantoms of the CIRS ATOM family were used. TLDs were placed in selected organ locations such as stomach, liver, lungs, and heart. The pediatric phantoms were scanned helically with the GE Discovery 750 HD clinical scanner for several examination protocols. For the simulations in Acuros, scanner-specific input, such as bowtie filters, overrange collimation, and tube current modulation schemes, were modeled. These scanner complexities were implemented by defining discretized X-ray beams whose spectral distribution, defined in Acuros by only six energy bins, varied across fan angle, cone angle, and slice position. The images generated during the CT acquisitions were used to create the geometrical models, by applying thresholding algorithms and assigning materials to the HU values. The TLDs were contoured in the phantom models as sensitive cylindrical volumes at the locations selected for dosimeters placement, to provide dose estimates, in terms of dose per unit photon. To compare measured doses with dose estimates, a calibration factor was derived from the CTDIvol displayed by the scanner, to account for the number of photons emitted by the X-ray tube during the procedure. RESULTS: The differences of the measured and estimated doses, in terms of absolute % errors, were within 13% for 153 TLD locations, with an error of 17% at the stomach for one study with the 10-year-old phantom. Root-mean-squared-errors (RMSE) across all TLD locations for all configurations were in the range of 3%-8%, with Acuros providing dose estimates in a time range of a few seconds up to 2 min. CONCLUSIONS: An overall good agreement between measurements and simulations was achieved, with average RMSE of 6% across all cases. The results demonstrate that Acuros can model a specific clinical scanner despite the required discretization in spatial and energy domains. The proposed deterministic tool has the potential to be part of a near real-time individualized dosimetry monitoring system for CT applications, providing patient-specific organ dose estimates.