Eutrophication assessment and environmental management perspectives of Tóbari: an arid subtropical coastal lagoon of the Gulf of California.

Coastal lagoons are vulnerable to eutrophication processes. In this study, we evaluate the eutrophication process in the restricted, arid subtropical Tóbari coastal lagoon, located in the eastern coast of the Gulf of California, where the main source of nutrient inputs and other pollutants is agricultural wastewater from the Yaqui Valley. The Assessment of Estuarine Trophic Status (ASSETS) model and the Trophic State Index (TRIX) were used to evaluate eutrophication. Overall, ASSETS showed that the Tóbari lagoon has a moderate eutrophication process, with seasonal symptoms of hypoxia, increased phytoplankton biomass, dominance of macroalgae (indicative of nutrient enrichment), and blooms development of potentially harmful algae species. The TRIX showed that the lagoon is mesotrophic most of the year. Challenges of environmental management detected correspond to reducing the input of nutrients and others contaminants from anthropic sources: agriculture, shrimp farming, livestock, and urban zones.

Contamination assessment and spatial distribution of heavy metals in the Sefidrud Delta coastal lagoons, Caspian Sea, N Iran.

Three coastal lagoons on the Sefidrud Delta, Caspian Sea, were investigated to evaluate heavy metal pollution in sediments. Amirkola Lagoon is located in the eastern part of the delta (abandoned delta lobe) and is aged more than 500 years, whereas Kiashahr and Zibakenar lagoons are in the western or active part delta lobe and formed in the last decades. One hundred six sediment samples and three sediment cores were taken from studied lagoons. The samples were analyzed by ICP-OES. Geo-accumulation index (Igeo), contamination factor (CF), degree of contamination (Cdeg), pollution load index (PLI), and Potential ecological risk index (RI) were employed to determine heavy metal pollution for Co, Cr, Cu, Ni, Pb, V and Zn. Nonparametric statistical analysis (Two-step cluster analysis, analysis of variance, and T-test technique) was used to discriminate the pollution sources. Based on contamination indices, the Kiashahr and Zibakenar lagoons show significant to moderate contamination with Co, Cu, Pb, Zn, and V, whereas the Amirkola Lagoon samples show the lowest metal contamination. PLI values demonstrated metal contamination in the Kiashahr and Zibakenar lagoons but no contamination in the Amirkola Lagoon. Although there was a notable rise in RI values from Amirkola to two other lagoons, all indicated low ecological risk. Statistical methods designated the unique interpretation of contaminant sources. Although the same geogenic origin of sediments in the Sefidrud Delta and lagoons deposits, Co, Zn, and Pb show anthropogenic sources in the newly-formed Kiashahr and Zibakenar lagoons.

The fate of antibiotic resistance genes in the coastal lagoon with multiple functional zones.

Coastal lagoons provide many important services to human society, but their year-round use for aquaculture introduces large amounts of sewage. The contamination of antibiotic resistance genes (ARGs) is therefore of great concern. In this study, 50 ARGs subtypes, two integrase genes (intl1, intl2), and 16S rRNA genes were detected by high-throughput quantitative PCR, and standard curves of all target genes were prepared for quantification. The occurrence and distribution of ARGs in a typical coastal lagoon (XinCun lagoon, China) were comprehensively explored. We detected 44 and 38 subtypes of ARGs in the water and sediment, respectively, and discuss the various factors influencing the fate of ARGs in the coastal lagoon. Macrolides-lincosamides-streptogramins B was the primary ARG type, and macB was the predominant subtype. Antibiotic efflux and antibiotic inactivation were the main ARG resistance mechanisms. The XinCun lagoon was divided into eight functional zones. The ARGs showed a distinct spatial distribution owing to the influence of microbial biomass and anthropogenic activity in different functional zones. Fishing rafts, abandoned fish ponds, the town sewage zone, and mangrove wetlands provided a large quantity of ARGs to the XinCun lagoon. Nutrients and heavy metals also significantly correlated with the fate of the ARGs, especially NO2--N and Cu, which cannot be ignored. It is noteworthy that lagoon-barrier systems coupled with persistent pollutant inputs result in coastal lagoons acting as a "buffer pool" for ARGs, which can then accumulate and threaten the offshore environment.

Distribution and ecological risk of metals in an urban natural protected area in the Riviera Maya, Mexico.

Urbanization can negatively impact natural protected areas near or surrounded by cities, and such impacts include untreated wastewater discharge, leachates from dumpsters, e-waste, and road dust. In this research, we show that not only large cities with industry are prone to be polluted, but also young touristic cities with high population increase rate can suffer from urban contamination. We evaluated metal pollution in a natural protected area within a 50-year-old city without conventional industry that was likely contaminated by the urban sprawl around the protected area. We tested water, zooplankton, sediment and plant samples for metallic elements to evaluate their bioaccumulation in zooplankton, enrichment factors and geoaccumulation index values in sediments, and translocation factors in plants. Finally, we evaluated the ecological risk due to metal contamination. Metals at levels above our detection limit (20 µg/L) were not found in the water and zooplankton samples. The sediments and plants in the storm drain section of the protected area had a greater concentration of metals and wastewater indicators (coliforms) than those in the rest of the lagoon. Moreover, signs of Al, Cu, Ni, Zn, Cr, Pb, and Ti contamination were found in the plant tissues. We estimated that the ecological risk of this natural protected area surrounded by the city of Cancun (Mexico) ranged from mild to strong, with Zn being the metal of most concern. The results highlight that young touristic cities around the world will endure contamination from urban sources; signs or early warnings of contamination must be identified to prevent and resolve such issues.

Parasite Community Analysis of The Gray Snapper Lutjanus Griseus (Perciformes,Lutjanidae) in a Tropical Region of The Southern Gulf of Mexico.

The gray snapper Lutjanus griseus is a commercially important fish species along its distribution range in the western Atlantic Ocean. However, despite its importance, there is still little knowledge about its parasitic fauna for the Mexican coasts of the Gulf of Mexico. The aims of this research were to generate a list of the parasitic fauna present in juvenile gray snapper L. griseus from a coastal lagoon located in southeastern Mexico, to evaluate the infection levels of parasites and to determine the relationship between the abundance of parasites and the fish size and condition factor. Samples of L. griseus (12 - 29.2 mm) were obtained in two periods of the year (dry and rainy seasons) to examine the intra-annual variability of its parasitic fauna. A total of 17 parasite species were recorded belonging to six taxonomic groups (Myxozoa, Monogenea, Digenea, Cestoda, Nematoda and Acanthocephala). The highest levels of infection (abundance, prevalence and intensity of infection) were found for the monogeneans Euryhaliotrema griseus and Euryhaliotrema fastigatum. There were no significant correlations between the total abundance of parasites and the fish condition and size (total length) in not any of the two seasons studied, suggesting that the body size and the biological condition index of the host did not directly influence the abundance of parasites in early life stages of L. griseus. Moreover, the species of parasites found that could be zoonotic for humans through the consumption of raw or inadequately cooked fish were the nematodes Contracaecum sp. type 1, Contracaecum sp. type 2, Cucullanus pargi and Pseudoterranova sp. The presence of the monogeneans E. griseus and E. fastigatum was also highlighted because these ectoparasite species are known to cause harm to fish under culture systems. All the parasite species found in this study, except nematodes, were new records of geographic distribution.

Understanding the early ontogenetic stages of Mugil liza (Mugilidae): Morphological traits and digestive/metabolic profile of pre-juveniles after recruitment.

The family Mugilidae consists mainly of diadromous species, whose reproduction occurs in offshore waters. Pre-juveniles shift their diet in the surf zone (zooplanktophagous to iliophagous). Later, during their recruitment into estuaries, huge changes take place in their digestive system. However, digestive and metabolic characteristics and some morphological traits at recruitment are unknown for Mugilidae. We performed comparative studies on early and late pre-juveniles of Mugil liza recruited in Mar Chiquita Coastal Lagoon (37°32'-37°45'S, 57°19'-57°26'W, Argentina). We determined digestive enzyme activities (intestine), energy reserves (liver/muscle), total/standard length, total weight, intestinal coefficient, hepatosomatic index and retroperitoneal fat. Pre-juveniles exhibited amylase, maltase, sucrase, lipase, trypsin and aminopeptidase-N (APN) activities, which were maintained over a wide range of pH and temperature, and exhibited Michaelis-Menten kinetics. In late pre-juveniles, amylase (422 ± 131 µmol maltose min-1 mgprot-1 ), sucrase (86 ± 14 mg glucose min-1 mgprot-1 ), trypsin (84 ± 9 µmoles min-1 mgprot-1 ) and APN (0.58 ± 0.08 µmoles min-1 mgprot-1 ) activities were higher (42%, 28%, 35% and 28%, respectively) than in the early stage. Also, the intestinal coefficient was higher in late (3.04) compared to early (2.06) pre-juveniles. Moreover, the liver appeared to be a main site of glycogen and triglyceride storage in late pre-juveniles, muscle being the site of storage in early pre-juveniles, exhibiting higher glycogen, free glucose and protein concentrations (92%, 82%, 32%, respectively). The results suggest that pre-juveniles of M. liza exhibit an adequate digestive battery to perform complete hydrolysis of various dietary substrates, availability of energy reserves and morphological characteristics to support their feeding habit and growth after recruitment. Our results represent an important contribution to knowledge of the ecology and digestive physiology of pre-juveniles of Mugilidae in the wild.

Spatiotemporal shoreline dynamics of Marismas Nacionales, Pacific coast of Mexico, based on a remote sensing and GIS mapping approach.

Within the last few decades, tropical coastal systems such as beaches, dunes, and mangrove forests have experienced high annual rates of loss worldwide due to natural and anthropogenic impacts. Historical remote sensing data have been used to map and monitor these fragile systems, as well as to track specific events through time. The purpose of this study was to examine coastal trends along Marismas Nacionales in Mexico, which is the largest wetland complex of the western coast of the Pacific Ocean. The opening of the Cuautla Canal in 1976 and the construction of several hydroelectric power dams have severely impacted this wetland system. Shoreline variability was estimated based on representative remote sensing images over half a century (1970 to 2019). Results indicate that, after 49 years, 805 ha of beach deposits have been lost in the Cuautla Canal and at the beach ridge region that should otherwise be an accretional coastal zone. Conversely, the southern section of the study site shows 406 ha of constant accretion during the same period due to the presence of the unobstructed San Pedro River. Our study highlights the adverse effects of engineering projects, such as inlets and hydroelectric dams throughout tropical coastal systems that have strongly depended on freshwater input from upstream rivers.

Hypoxia and nutrient dynamics affected by marine aquaculture in a monsoon-regulated tropical coastal lagoon.

The Laoyehai (lagoon) is located at the east coast of Hainan Island in the South China Sea and has been subject to perturbations from human activities, notably marine aquaculture, and has eutrophic surface and hypoxic near-bottom waters. A lack of knowledge of hydrodynamic and biogeochemical processes is a challenge to the sustainable management of lagoon at the ecosystem level in science. Five field campaigns, including three during the southwest monsoon and two in the northeast monsoon periods, were carried out at the Laoyehai in 2008-2011. The aim of this study is to investigate the impacts of dynamic processes of hydrography and human activities on nutrient geochemistry and their relationships to the system eutrophication and hypoxia in the lagoon. In this coastal system, high levels of ammonium relative to nitrate are found, elevated phosphate skews the DIN/DIP relative to the Redfield ratio, and the dissolved silicate concentration is high because of submarine groundwater discharge. The organic fraction in the Laoyehai accounts for a large proportion of the total nutrients associated with the release of wastes from marine aquaculture. The hypoxia of near-bottom waters in the Laoyehai is created and maintained by heterotrophic processes that are fueled by organic matter, which are exacerbated by poor water exchange as a consequence of the geomorphology and weak tidal circulation.

Do pharmaceuticals bioaccumulate in marine molluscs and fish from a coastal lagoon?

The bioaccumulation of 20 pharmaceuticals in cockle (Cerastodema glaucum), noble pen shell (Pinna nobilis), sea snail (Murex trunculus), golden grey mullet (Liza aurata) and black goby (Gobius niger) was evaluated, considering their distribution throughout the Mar Menor lagoon and their variations in spring and autumn 2010. The analytical procedure was adapted for the different matrices as being sensitive and reproducible. Eighteen out of the 20 compounds analysed were found at low ngg(-1) in these species throughout the lagoon. Hydrochlorothiazide and carbamazepine were detected in all species considered. The bioaccumulation of pharmaceuticals was heterogeneous in the lagoon, with a higher number of pharmaceuticals being detected in fish (18) than in wild molluscs (8), particularly in golden grey mullet muscle (16). В-blockers and psychiatric drugs were preferentially bioccumulated in fish and hydrochlorothiazide was also confirmed in caged clams. The higher detection frequency and concentrations found in golden grey mullet suggested that mugilids could be used as an indicator of contamination by pharmaceuticals in coastal areas. To the best of our knowledge, this is the first study that shows data about hydrochlorothiazide, levamisole and codeine in wild marine biota.

Before-after environmental impact assessment of an artificial channel opening on a south-western Atlantic choked lagoon system.

This study aimed to evaluate the human induced impact of a channel opening in a choked lagoon and attempted to establish the cause-effect links for the observed changes. The same lagoon system was sampled before and after the channel opening event, and the differences in fish and crustacean assemblages and environmental variables between these periods analysed. The opening of the artificial channel resulted in salinity increases, leading to a shift in species composition, favouring marine species and reducing abundance and diversity of previously dominant freshwater species. Furthermore, saltwater entrance into the choked lagoon caused an unexpected decrease in species richness and biomass, plus deterioration of ecosystem processes, reducing fishing capacity. The effects of salinity on the ecosystem vary depending on the ecosystem's composition and capacity to overcome salinity changes, thus specific monitoring projects are important strategies for developing coastal lagoon conservation management.

Dissolved Copper, Nickel and Lead in Tampamachoco Lagoon and Tuxpan River Estuary in the SW Gulf of Mexico.

In order to estimate the effects of a thermal power plant, physicochemical parameters and the concentrations of copper, nickel and lead were evaluated in water from both Tampamachoco Lagoon and the estuary of the Tuxpan River. Average salinities were 33.66 ups in the lagoon area, 32.77 ups in the channel that joins the lagoon and the river, and 24.74 ups in the river estuary. Total average metal concentrations were 21.95 for Cu, 29.67 for Ni and 4.31 µ/L for Pb. Sampling point 1 and samples from the bottom water of the lagoon present the highest salinities and concentrations of suspended matter, TOC, Cu, Ni and Pb.These high values may be associated with the infiltration of sea water either from plant operation or from the channel that connects the lagoon with the sea.

Seasonal distribution of pharmaceuticals in marine water and sediment from a Mediterranean coastal lagoon (SE Spain).

The seasonal variations in the occurrence and distribution of pharmaceuticals were evaluated in seawater and sediment of Mar Menor lagoon from spring 2010 to winter 2011. A total of 20 pharmaceuticals in seawater and 14 in sediments were found at concentrations from low ngL(-)(1) up to 168ngL(-)(1) (azithromycin) in seawater and from low ngg(-1) up to 50.3ngg(-1) (xylazine) in sediments. Azithromycin, xylazine and metoprolol were the most ubiquitous compounds in seawater since they were found in all seawater samples collected. Seven compounds were quantified in both matrices: clarithromycin, erythromycin, hydrochlorothiazide, irbesartan, losartan, salicylic acid and valsartan. Seasonal distribution profiles revealed different sources of pollutants associated to both, El Albujón watercourse (which receives the input of a WWTP) and other non-controlled discharges, into the lagoon. In summer the highest concentrations in seawater for most of the pharmaceuticals were detected close to main touristic nuclei, probably as consequence of sources such as the excretion from bathers and/or other non-controlled discharges, these being significantly higher than in autumn and winter for antibiotics. On the contrary, the mean concentration of lorazepam was significantly higher in colder seasons than in warmer ones. Sulfamethoxazole, erythromycin and especially clarithromycin showed hazard quotients higher than 1 in seawater at some areas of this lagoon indicating a potential risk to aquatic organisms in such specific areas.

Genome sequences of Vibrio diabolicus and Algoriphagus sp. isolated from the San Elijo coastal lagoons in San Diego.

We report two draft genome sequences related to the genera Vibrio and Algoriphagus, isolated from water samples at the San Elijo Lagoon Ecological Reserve, which is one of the largest remaining coastal wetlands in San Diego, California. The initial whole genome-based comparison illustrates the uniqueness of these species.

Ecotoxicological and health risks associated with sediment-bound polycyclic aromatic hydrocarbons in peri-urban closed and open coastal lagoons.

Coastal urbanisation has ramifications for the sustainable development of developing nations. There are often unquantified ecological and health risks associated with urbanisation. Sixteen polycyclic aromatic hydrocarbons (PAHs) were analysed in surface sediment from three peri-urban coastal lagoons in southern Ghana. We found significant spatial variations of sediment PAHs. These variations were attributed to physiography of the lagoons and diverse anthropogenic activities surrounding them. Total PAHs ranged from 20.81 to 24,801.38 µg/kg (dry weight), underscoring a low to very high pollution level. Diagnostic ratios revealed both pyrogenic and petrogenic origins. Over 50 % of individual PAHs were of moderate ecological risk to benthic organisms, and cancer risk to humans was above the World Health Organisation's recommended safety limit (1 × 10-6). These ecological and health risks should be wake-up call for a more integrated urban planning approach to coastal urbanisation as coastal communities largely depend on natural ecosystems for food and livelihood opportunities.

Environmental assessment of toxic heavy metals in bottom sediments of the Sharm Obhur, Jeddah, Saudi Arabia.

The concentrations, spatial distributions, pollution level, and health risks of heavy metals in sediments of the Sharm Obhur, Northern Jeddah, Saudi Arabia were evaluated. Average concentrations were found to be: Cr > Zn > Ni > Cu > As>Pb with the highest concentrations found near the head of the sharm, and decreasing towards the mouth. Environmental indices, together with the statistical analyses, showed that the sharm experiences a low to moderate degree of pollution. Sampling sites with heavy metal contamination are concentrated near the head and the southern coast of the sharm, where intensive human activities associated with a boat dock, construction, and recreation are common. The mean carcinogenic risk (CR) values of As, Cr and Ni are at permissible level suggesting unlikely adverse impacts of heavy metals on human health. Despite acceptable CR values; however, serious non-carcinogenic and carcinogenic health threats from metals may yet be an issue particularly for sensitive populations such as children.

Spatial distribution of PAHs, nickel, and vanadium in sediments from a large coastal lagoon near a petroleum extraction area in the southern Gulf of Mexico.

One of the world's crucial areas for crude oil exploration and extraction is the southern Gulf of Mexico, where Terminos Lagoon (TL) is located. Sediments from the TL region were used to assess the spatial patterns, origins, and ecotoxicological risks associated with 16 priority polycyclic aromatic hydrocarbons (PAHs; 3.1-248.9 ng⸳g-1 dry weight basis, dw) and trace metals (Ni = 11.0-104.0 mg⸳kg-1; V = 2.0-35.0 mg⸳kg-1 dw) linked to anthropogenic activities. Although origin indices based on PAHs and metals concentrations indicate no crude oil pollution in the region, sources of pyrogenic PAHs were identified. A chemometric approach demonstrated associations between organic matter and PAHs, and that metal accumulation depends mostly by the input of lithogenic materials. Ecotoxicological risk estimations showed a higher risk of possible adverse effects in sites near swamps and mangrove zones, highlighting the need of future monitoring. This study provides a reference for policymakers to conserve Mexico's largest coastal lagoon and other oil-impacted coastal areas worldwide.

Ciliate diversity in rodrigo de freitas lagoon (Rio de Janeiro, Brazil) from an integrative standpoint.

The Rodrigo de Freitas Lagoon is a highly eutrophic lacustrine system and has one of the longest histories of exploration and anthropic alteration in Brazil. Despite its relevance, limited studies explored the diversity of micro-eukaryotes in the lagoon. Ciliates (Alveolata, Ciliophora) are overlooked in environmental microbiology, especially in tropical and subtropical ecosystems, resulting in limited knowledge about their diversity and functional relevance in South American habitats, particularly in coastal lagoons. To fill this gap, here we investigated the diversity of ciliates in a brackish coastal lagoon in an urban area of Rio de Janeiro, Brazil, applying and comparing the performance of morphological and metabarcoding approaches. The metabarcoding analysis, based on high-throughput sequencing of the hipervariable region V4 of the 18S rRNA genes detected 37 molecular operational taxonomic units (MOTUs) assigned to Ciliophora, representing only about a half (56.9%) of the diversity detected by microscopy, which counted 65 ciliate morphotypes. The most representative classes in both approaches were Spirotrichea and Oligohymenophorea. The metabarcoding analysis revealed that 35.3% of the ciliate MOTUs had less than 97% similarity to available sequences in the NCBI database, indicating that more than one-third of these MOTUs potentially represents still not represented or undescribed ciliate species in current databases. Our findings indicate that metabarcoding techniques can significantly enhance the comprehension of ciliate diversity in tropical environments, but the scarcity of reference sequences of brackish ciliates in molecular databases represents a challenge to the taxonomic assignment of the MOTUs. This study provides new insights into the diversity of ciliates in a threatened coastal lagoon, revealing a vast array of still unknown and rare ciliate taxonomic units in tropical environments.

Genetic Variability in Mediterranean Coastal Ecosystems: Insights into Ostrea spp. (Bivalvia: Ostreidae).

Oysters are sessile, filter-feeding bivalve molluscs widely distributed in estuarine and coastal habitats worldwide. They constitute a valuable resource for fisheries and extensive aquaculture and provide essential ecological services. Yet, their genetic diversity and distribution remain understudied. The variability in shell morphology complicates species classification, which is influenced by environmental and genetic factors. Although molecular phylogenetics research has refined oyster taxonomy and identified approximately 100 extant species, numerous taxonomic uncertainties persist. In the present study, we aimed to document the occurrence of small flat oysters of the genus Ostrea along the Mediterranean coastal areas of Liguria and Sardinia (Italy). Specifically, 16S rRNA sequence data were used to identify Ostrea species. Our findings offer novel insights into the O. stentina species complex and O. neostentina, a new species in the Mediterranean coastal areas of Italy. The study data further our understanding of Ostrea species diversity, distribution, and evolutionary patterns.

Bivalve shell growth from molecular to sclerochronological scale: Environment and intrinsic factors control increment deposition.

Biomineralisation of bivalve shells raises questions at the level of genes to the final calcified product. For the first time, gene expression has been studied in association with growth increment deposition in the mussel Mytilus galloprovincialis. A short-term experiment highlighted that biomineralisation genes exhibit a rhythm of expression consistent with the observed tidal increment formation. Long-term mark-recapture experiments were conducted in three Mediterranean environments and revealed that the mussel shells harbour complex incrementation regimes, consisting of daily, tidal and a mixed periodicity of ∼1.7 growth increment.d-1 formed. The latter is likely related to the local tidal regime, although the mussels were continuously submerged and exposed to a small tidal range. The pattern of growth increments shifted from mixed to daily in Mediterranean lagoon, and to tidal at sea, probably linked to biological clocks. Based on our results and the literature, a hypothetical model for mussel shell increment formation in various habitats is proposed.

Linking centennial scale anthropogenic changes and sedimentary records as lessons for urban coastal management.

Coastal eutrophication and urban flooding are increasingly important components of global change. Although increased seawater renewal by barrier openings and channelizing are common mitigation measures in coastal lagoons worldwide, their effects on these ecosystems are not fully understood. Here, we evaluated the relationships between human interventions in the watershed, artificial connections to the sea, and the sediment burial rates in an urban coastal lagoon (Maricá lagoon, Southeastern Brazil). Sediment accretion along with nutrient and carbon burial rates were determined in two sediment cores representing the past ∼120 years (210Pb dating) and associated with anthropogenic changes as indicated by historical records and geoinformation analyses. Lagoon infilling and eutrophication, expressed by the average sediment accretion, TP, TN, and OC burial rates, respectively, increased ∼9-18, 13-15, 11-14 and 11-12-fold from the earliest (<1950) to the most recent (2000-2017) period. These multi-proxy records confirm mechanistic links between deforestation, urbanization, and untreated sewage discharges. In addition, our findings reveal artificial connections to the sea may contribute to lagoonal eutrophication and infilling, particularly when not integrated with sewage treatment and forest conservation or reforestation in the watershed. Therefore, increased seawater renewal by physical interventions commonly considered as mitigation measures may in contrast cause severe degradation in coastal lagoons, causing harmful consequences that should be not neglected when implementing management practices.