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1.
Appl Environ Microbiol ; 89(2): e0200722, 2023 02 28.
Artigo em Inglês | MEDLINE | ID: mdl-36719244

RESUMO

Cupriavidus necator has the unique metabolic capability to grow under heterotrophic, autotrophic, and mixotrophic conditions. In the current work, we examined the effect of growth conditions on the metabolic responses of C. necator. In our lab-scale experiments, autotrophic growth was rapid, with a short lag phase as the exponential growth stage was initiated in 6 to 12 h. The lag phase extended significantly (>22 h) at elevated O2 and CO2 partial pressures, while the duration of the lag phase was independent of the H2 or N2 partial pressure. Under heterotrophic conditions with acetate as the organic substrate, the lag phase length was short (<12 h), but it increased with increasing acetate concentrations. When glucose and glycerol were provided as the organic substrate, the lag phase was consistently long (>12 h) regardless of the examined substrate concentrations (up to 10.0 g/L). In the transition experiments, C. necator cells showed rapid transitions from autotrophic to heterotrophic growth in less than 12 h and vice versa. Our experimental results indicate that C. necator can rapidly grow with both autotrophic and heterotrophic substrates, while the lag time substantially increases with nonacetate organic substrates (e.g., glucose or glycerol), high acetate concentrations, and high O2 and CO2 partial pressures. IMPORTANCE The current work investigated the inhibition of organic and gaseous substrates on the microbial adaption of Cupriavidus necator under several metabolic conditions commonly employed for commercial polyhydroxyalkanoate production. We also proposed a two-stage cultivation system to minimize the lag time required to change over between the heterotrophic, autotrophic, and mixotrophic pathways.


Assuntos
Cupriavidus necator , Processos Heterotróficos , Cupriavidus necator/metabolismo , Dióxido de Carbono/metabolismo , Glicerol/metabolismo , Processos Autotróficos/fisiologia , Acetatos/metabolismo
2.
Biotechnol Bioeng ; 120(9): 2509-2522, 2023 09.
Artigo em Inglês | MEDLINE | ID: mdl-37027375

RESUMO

Process intensification has been widely used for many years in the mammalian biomanufacturing industry to increase productivity, agility and flexibility while reducing production costs. The most commonly used intensified processes are operated using a perfusion or fed-batch seed bioreactor enabling a higher than usual seeding density in the fed-batch production bioreactor. Hence, as part of the growth phase is shifted to the seed bioreactor, there is a lower split ratio, which increases the criticality of the seed bioreactor and could impact production performance. Therefore, such intensified processes should be designed and characterized for robust process scale-up. This research work is focused on intensified processes with high seeding density inoculated from seed bioreactor in fed-batch mode. The impact of the feeding strategy and specific power input (P/V) in the seed bioreactor and on the production step with two different cell lines (CL1 and CL2) producing two different monoclonal antibodies was investigated. Cell culture performance in the production bioreactor has been improved due to more stressful conditions for the cells in the seed bioreactor and the impact of the production bioreactor P/V on the production performance was limited. This is the first reported study highlighting a positive impact of cellular stress in seed bioreactors on intensified production bioreactor with the introduction of the "organized stress" concept.


Assuntos
Reatores Biológicos , Técnicas de Cultura de Células , Cricetinae , Animais , Cricetulus , Células CHO , Anticorpos Monoclonais , Técnicas de Cultura Celular por Lotes
3.
Bull Math Biol ; 85(9): 84, 2023 08 14.
Artigo em Inglês | MEDLINE | ID: mdl-37580520

RESUMO

Lag phase is observed in bacterial growth during a sudden change in conditions: growth is inhibited whilst cells adapt to the environment. Bi-phasic, or diauxic growth is commonly exhibited by many species. In the presence of two sugars, cells initially grow by consuming the preferred sugar then undergo a lag phase before resuming growth on the second. Biomass increase is characterised by a diauxic growth curve: exponential growth followed by a period of no growth before a second exponential growth. Recent literature lacks a complete dynamic description, artificially modelling lag phase and employing non-physical representations of precursor pools. Here, we formulate a rational mechanistic model based on flux-regulation/proteome partitioning with a finite precursor pool that reveals core mechanisms in a compact form. Unlike earlier systems, the characteristic dynamics emerge as part of the solution, including the lag phase. Focussing on growth of Escherichia coli on a glucose-lactose mixture we show results accurately reproduce experiments. We show that for a single strain of E. coli, diauxic growth leads to optimised biomass yields. However, intriguingly, for two competing strains diauxic growth is not always the best strategy. Our description can be generalised to model multiple different microorganisms and investigate competition between species/strains.


Assuntos
Escherichia coli , Modelos Biológicos , Conceitos Matemáticos , Glucose , Adaptação Fisiológica
4.
Angew Chem Int Ed Engl ; 62(45): e202310727, 2023 Nov 06.
Artigo em Inglês | MEDLINE | ID: mdl-37725396

RESUMO

The prevalence of kinetically accessible states in supramolecular polymerization pathways has been exploited to control the growth of the polymer and thereby to obtain niche morphologies. Yet, these pathways themselves are not easily amenable for experimental delineation but could potentially be understood through molecular dynamics (MD) simulations. Herein, we report an extensive investigation of the self-assembly of pyrene-substituted diamide (PDA) monomers in solution, conducted using atomistic MD simulations and advanced sampling methods. We characterize such kinetic and thermodynamic states as well as the transition pathways and free energy barriers between them. PDA forms a dimeric segment with the N- to C-termini vectors of the diamide moieties arranged either in parallel or anti-parallel fashion. This characteristic, combined with the molecule's torsional flexibility and pyrene-solvent interactions, presents an ensemble of molecular configurations contributing to the kinetic state in the polymerization pathway. While this ensemble primarily comprises short oligomers containing a mix of anti-parallel and parallel dimeric segments, the thermodynamic state of the assembly is a right-handed polymer featuring parallel ones only. Our work thus offers an approach by which the landscape of any specific supramolecular polymerization can be deconstructed.

5.
Phys Biol ; 19(2)2022 01 31.
Artigo em Inglês | MEDLINE | ID: mdl-34942613

RESUMO

In studies of the unicellular eukaryoteDictyostelium discoideum, many have anecdotally observed that cell dilution below a certain 'threshold density' causes cells to undergo a period of slow growth (lag). However, little is documented about the slow growth phase and the reason for different growth dynamics below and above this threshold density. In this paper, we extend and correct our earlier work to report an extensive set of experiments, including the use of new cell counting technology, that set this slow-to-fast growth transition on a much firmer biological basis. We show that dilution below a certain density (around 104cells ml-1) causes cells to grow slower on average and exhibit a large degree of variability: sometimes a sample does not lag at all, while sometimes it takes many moderate density cell cycle times to recover back to fast growth. We perform conditioned media experiments to demonstrate that a chemical signal mediates this endogenous phenomenon. Finally, we argue that while simple models involving fluid transport of signal molecules or cluster-based signaling explain typical behavior, they do not capture the high degree of variability between samples but nevertheless favor an intra-cluster mechanism.


Assuntos
Modelos Biológicos , Transdução de Sinais , Ciclo Celular , Densidade Demográfica , Dinâmica Populacional
6.
J Evol Biol ; 34(6): 953-967, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-33555094

RESUMO

Physiological states can determine the ability of organisms to handle stress. Does this mean that the same selection pressure will lead to different evolutionary outcomes, depending on the organisms' physiological state? If yes, what will be the genomic signatures of such adaptation(s)? We used experimental evolution in Escherichia coli followed by whole-genome whole-population sequencing to investigate these questions. The sensitivity of Escherichia coli to ultraviolet (UV) radiation depends on the growth phase during which it experiences the radiation. We evolved replicate E. coli populations under two different conditions of UV exposures, namely exposure during the lag and the exponential growth phases. Initially, the UV sensitivity of the ancestor was greater during the exponential phase than the lag phase. However, at the end of 100 cycles of exposure, UV resistance evolved to similar extents in both treatments. Genome analysis showed that mutations in genes involved in DNA repair, cell membrane structure and RNA polymerase were common in both treatments. However, different functional groups were found mutated in populations experiencing lag and exponential UV treatment. In the former, genes involved in transcriptional and translational regulations and cellular transport were mutated, whereas the latter treatment showed mutations in genes involved in signal transduction and cell adhesion. Interestingly, the treatments showed no phenotypic differences in a number of novel environments. Taken together, these results suggest that selection pressures at different physiological stages can lead to differences in the genomic signatures of adaptation, which need not necessarily translate into observable phenotypic differences.


Assuntos
Evolução Biológica , Escherichia coli/genética , Genoma Bacteriano , Tolerância a Radiação/genética , Raios Ultravioleta , Escherichia coli/efeitos da radiação , Aptidão Genética , Seleção Genética
7.
Biotechnol Appl Biochem ; 68(4): 823-831, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32776353

RESUMO

Tyrosinase starts melanogenesis and determines its course, catalyzing the oxidation by molecular oxygen of tyrosine to dopa, and that of dopa to dopaquinone. Then, nonenzymatic coupling reactions lead to dopachrome, which evolves toward melanin. Recently, it has been reported that d-tyrosine acts as tyrosinase inhibitor and depigmenting agent. The action of tyrosinase on the enantiomers of tyrosine (l-tyrosine and d-tyrosine) and dopa (l-dopa and d-dopa) was studied for the first time focusing on quantitative transient phase kinetics. Post-steady-state transient phase studies revealed that l-dopachrome is formed more rapidly than d-dopachrome. This is due to the lower values of Michaelis constants for l-enantiomers than for d-enantiomers, although the maximum rates are equal for both enantiomers. A deeper analysis of the inter-steady-state transient phase of monophenols demonstrated that the enantiomer d-tyrosine causes a longer lag period and a lower steady-state rate, than l-tyrosine at the same concentration. Therefore, d-melanogenesis from d-tyrosine occurs more slowly than does l-melanogenesis from l-tyrosine, which suggests the apparent inhibition of melanin biosynthesis by d-tyrosine. As conclusion, d-tyrosine acts as a real substrate of tyrosinase, with low catalytic efficiency and, therefore, delays the formation of d-melanin.


Assuntos
Di-Hidroxifenilalanina/química , Proteínas Fúngicas/química , Melaninas/síntese química , Monofenol Mono-Oxigenase/química , Tirosina/química , Catálise , Cinética , Melaninas/química , Oxirredução , Estereoisomerismo
8.
Anal Biochem ; 593: 113595, 2020 03 15.
Artigo em Inglês | MEDLINE | ID: mdl-31987861

RESUMO

Steady-state enzyme kinetics typically relies on the measurement of 'initial rates', obtained when the substrate is not significantly consumed and the amount of product formed is negligible. Although initial rates are usually faster than those measured later in the reaction time-course, sometimes the speed of the reaction appears instead to increase with time, reaching a steady level only after an initial delay or 'lag phase'. This behavior needs to be interpreted by the experimentalists. To assist interpretation, this article analyzes the many reasons why, during an enzyme assay, the observed rate can be slow in the beginning and then progressively accelerate. The possible causes range from trivial artifacts to instances in which deeper mechanistic or biophysical factors are at play. We provide practical examples for most of these causes, based firstly on experiments conducted with ornithine δ-aminotransferase and with other pyridoxal-phosphate dependent enzymes that have been studied in our laboratory. On the side to this survey, we provide evidence that the product of the ornithine δ-aminotransferase reaction, glutamate 5-semialdehyde, cyclizes spontaneously to pyrroline 5-carboxylate with a rate constant greater than 3 s-1.


Assuntos
Ensaios Enzimáticos/métodos , Enzimas/química , Artefatos , Cinética , Ornitina-Oxo-Ácido Transaminase/química , Especificidade por Substrato
9.
J Plant Res ; 133(5): 649-664, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-32621067

RESUMO

Two alien species in Europe, Impatiens glandulifera and I. balfourii, are closely related, have similar growth rates and reproductive capacities, and are very attractive to pollinators. Nevertheless, only I. glandulifera is a highly invasive alien species in Europe, while I. balfourii is non-invasive. We assumed that the varying levels of invasiveness are driven by differences in the floating ability of their seeds, which may determine the invasion success of riparian alien plants, such as the Impatiens species. By mimicking two types of aquatic conditions, we determined seed floating ability for each species from younger and older populations. We also analyzed four seed traits: seed viability, surface, shape and coat structure. Seeds of the non-invasive I. balfourii float less well than seeds of the invasive I. glandulifera. We also found that the seeds of I. balfourii from the younger population have a higher floating ability in comparison with that of the seeds from the older population. The results for I. glandulifera were the opposite, with decreased floating ability in the younger population. These differences were associated with seed surface, shape and coat structure. These results indicate that the floating ability of I. balfourii seeds may increase over time following its introduction into a given area, while in the case of I. glandulifera, this ability may gradually decrease. Therefore, the former species, currently regarded as a poor disperser, has the potential to become invasive in the future, whereas the latter does not seem to benefit from further investments in the floating ability of its seeds.


Assuntos
Impatiens , Espécies Introduzidas , Sementes , Europa (Continente) , Impatiens/crescimento & desenvolvimento , Água
10.
Ecotoxicol Environ Saf ; 202: 110891, 2020 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-32593097

RESUMO

Organophosphate ester contaminants, including organophosphate pesticides (OPPs) and organophosphate flame retardants (OPFRs) are ubiquitous in surface water and pose a significant risk to aquatic organisms, thus it is important to develop effective methods for long-term monitoring of these emerging compounds. Polar organic chemical integrative sampler (POCIS) has become a promising monitoring tool for waterborne contaminants, yet recent studies found that the commonly used polyethersulfone (PES) membrane strongly sorbed some moderately hydrophobic compounds, resulting in long lag-phase for chemical accumulation in POCIS. In the present study, 0.45-µm nylon membranes was selected as POCIS diffusion-limiting membrane to design a new POCIS-Nylon configuration for analyzing moderately hydrophobic OPPs and OPFRs in water. The POCIS-Nylon had negligible lag-phase due to low sorption of OPPs and OPFRs to nylon membrane. Meanwhile, linear accumulation time and sensitivity for target contaminants using POCIS-Nylon retained similar to the traditional POCIS. Water velocity and chemical concentration had little impact on sampling rate (Rs), validating that the POCIS-Nylon was suitable for various water conditions. Finally, the occurrence of OPPs and OPFRs in urban waterways of Guangzhou, China was evaluated using the POCIS-Nylon with Rs values that were calibrated in the laboratory. The average concentration of OPPs was 4.97 ± 1.35 ng/L (range: 2.64 ± 1.28-6.54 ± 0.18 ng/L) and the average concentration of OPFRs was 400 ± 88 ng/L (range: 316 ± 24-615 ± 36 ng/L) across nine sampling sites. The present study provides a way to resolve the inherent challenge of accumulating hydrophobic substances by POCIS.


Assuntos
Monitoramento Ambiental/métodos , Nylons/química , Poluentes Químicos da Água/análise , Calibragem , China , Retardadores de Chama/análise , Interações Hidrofóbicas e Hidrofílicas , Compostos Orgânicos/química , Organofosfatos/análise , Polímeros , Sulfonas
11.
Sensors (Basel) ; 20(12)2020 Jun 18.
Artigo em Inglês | MEDLINE | ID: mdl-32570941

RESUMO

Bacterial growth in batch cultures occurs in four phases (lag, exponential/log, stationary and death phase) that differ distinctly in number of different bacteria, biochemistry and physiology. Knowledge regarding the growth phase and its kinetics is essential for bacterial research, especially in taxonomic identification and monitoring drug interactions. However, the conventional methods by which to assess microbial growth are based only on cell counting or optical density, without any insight into the biochemistry of cells or processes. Both Raman and Fourier transform infrared (FTIR) spectroscopy have shown potential to determine the chemical changes occurring between different bacterial growth phases. Here, we extend the application of spectroscopy and for the first time combine both Raman and FTIR microscopy in a multimodal approach to detect changes in the chemical compositions of bacteria within the same phase (intra-phase). We found a number of spectral markers associated with nucleic acids (IR: 964, 1082, 1215 cm-1; RS: 785, 1483 cm-1), carbohydrates (IR: 1035 cm-1; RS: 1047 cm-1) and proteins (1394 cm-1, amide II) reflecting not only inter-, but also intra-phase changes in bacterial chemistry. Principal component analysis performed simultaneously on FTIR and Raman spectra enabled a clear-cut, time-dependent discrimination between intra-lag phase bacteria probed every 30 min. This demonstrates the unique capability of multimodal vibrational spectroscopy to probe the chemistry of bacterial growth even at the intra-phase level, which is particularly important for the lag phase, where low bacterial numbers limit conventional analytical approaches.


Assuntos
Bactérias , Carboidratos , Proteínas , Bactérias/crescimento & desenvolvimento , Análise de Componente Principal , Espectroscopia de Infravermelho com Transformada de Fourier , Análise Espectral Raman , Vibração
12.
Curr Genet ; 65(3): 721-727, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30666394

RESUMO

When faced with environmental changes, microbes enter a lag phase during which cell growth is arrested, allowing cells to adapt to the new situation. The discovery of the lag phase started the field of gene regulation and led to the unraveling of underlying mechanisms. However, the factors determining the exact duration and dynamics of the lag phase remain largely elusive. Naively, one would expect that cells adapt as quickly as possible, so they can resume growth and compete with other organisms. However, recent studies show that the lag phase can last from several hours up to several days. Moreover, some cells within the same population take much longer than others, despite being genetically identical. In addition, the lag phase duration is also influenced by the past, with recent exposure to a given environment leading to a quicker adaptation when that environment returns. Genome-wide screens in Saccharomyces cerevisiae on carbon source shifts now suggest that the length of the lag phase, the heterogeneity in lag times of individual cells, and the history-dependent behavior are not determined by the time it takes to induce a few specific genes related to uptake and metabolism of a new carbon source. Instead, a major shift in general metabolism, and in particular a switch between fermentation and respiration, is the major bottleneck that determines lag duration. This suggests that there may be a fitness trade-off between complete adaptation of a cell's metabolism to a given environment, and a short lag phase when the environment changes.


Assuntos
Adaptação Fisiológica , Regulação Fúngica da Expressão Gênica , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomyces cerevisiae/metabolismo , Carbono/metabolismo , Fermentação , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
13.
Appl Environ Microbiol ; 85(14)2019 07 15.
Artigo em Inglês | MEDLINE | ID: mdl-31076436

RESUMO

Bacterial adaptation is characterized by a lag phase during which cells do not multiply or modify their physiology to cope with the constraints of their environment. Our aim was to determine a sequence of events during the lag phase of growth at low temperature and pH for three Bacillus cereus strains. The onsets of expression of two genes, one of which is essential for stress adaptation (cshA, coding for a RNA helicase) and one of which is involved in the transition between lag phase and exponential phase (abrB, coding for a transition regulator), were determined using fluorescent transcriptional reporter systems. Regardless of the stressing conditions and the tested strains, the cshA promoter was active very early, while the biomass increased and always did so before the first cell division. At 12°C and pH 7.0, the onset of cshA promoter activity occurred at between 3 h and 7 h, while the bacterial counts started to increase at between 12 h and 13 h. At pH 5.0 and at 20°C or 30°C, the onset of cshA promoter activity occurred before 1 h and earlier than at pH 7.0. In contrast, the onset of abrB promoter activity depended on the strain and the stressing conditions. In the ATCC 14579 strain, the onset of abrB promoter activity always started at between 30 min and 3 h, before biomass increased and cell division occurred. For the other strains, it took place along with the first cell division at 12°C but did so much later during growth under the other tested conditions.IMPORTANCE The spore-forming bacterium B. cereus is a major cause of foodborne outbreaks in Europe. Some B. cereus strains can grow at low temperatures and low pH in many processed foods. Modeling of the bacterial lag time is hampered by a lack of knowledge of the timing of events occurring during this phase. In this context, the identification of lag phase markers, not currently available, could be a real advance for the better prediction of lag time duration. Currently, no molecular markers of this phase are available. By determining that cshA was always expressed early during the lag phase, we provide a molecular marker of the early adaptation process of B. cereus cells when exposed to low temperature and pH.


Assuntos
Bacillus cereus/genética , Proteínas de Bactérias/genética , Expressão Gênica , Proteínas de Membrana/genética , Adaptação Fisiológica/genética , Bacillus cereus/crescimento & desenvolvimento , Bacillus cereus/fisiologia , Proteínas de Bactérias/metabolismo , Temperatura Baixa , Marcadores Genéticos , Concentração de Íons de Hidrogênio , Proteínas de Membrana/metabolismo
14.
Exp Eye Res ; 182: 74-84, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-30905716

RESUMO

CB2R receptors have demonstrated beneficial effects in wound healing in several models. We therefore investigated a potential role of CB2R receptors in corneal wound healing. We examined the functional contribution of CB2R receptors to the course of wound closure in an in vivo murine model. We additionally examined corneal expression of CB2R receptors in mouse and the consequences of their activation on cellular signaling, migration and proliferation in cultured bovine corneal epithelial cells (CECs). Using a novel mouse model, we provide evidence that corneal injury increases CB2R receptor expression in cornea. The CB2R agonist JWH133 induces chemorepulsion in cultured bovine CECs but does not alter CEC proliferation. The signaling profile of CB2R activation is activating MAPK and increasing cAMP accumulation, the latter perhaps due to Gs-coupling. Lipidomic analysis in bovine cornea shows a rise in acylethanolamines including the endocannabinoid anandamide 1 h after injury. In vivo, CB2R deletion and pharmacological block result in a delayed course of wound closure. In summary, we find evidence that CB2R receptor promoter activity is increased by corneal injury and that these receptors are required for the normal course of wound closure, possibly via chemorepulsion.


Assuntos
Lesões da Córnea/metabolismo , Receptores de Canabinoides/fisiologia , Cicatrização/fisiologia , Animais , Canabinoides/farmacologia , Movimento Celular/fisiologia , Proliferação de Células/fisiologia , Células Cultivadas , Quimiotaxia/fisiologia , Modelos Animais de Doenças , Células Epiteliais/efeitos dos fármacos , Células Epiteliais/fisiologia , Epitélio Corneano/metabolismo , Camundongos , Receptores de Canabinoides/metabolismo , Transdução de Sinais/fisiologia
15.
J Ind Microbiol Biotechnol ; 46(6): 843-853, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30806872

RESUMO

The economic viability of bio-production processes is often limited by damage to the microbial cell membrane and thus there is a demand for strategies to increase the robustness of the cell membrane. Damage to the microbial membrane is also a common mode of action by antibiotics. Membrane-impermeable DNA-binding dyes are often used to assess membrane integrity in conjunction with flow cytometry. We demonstrate that in situ assessment of the membrane permeability of E. coli to SYTOX Green is consistent with flow cytometry, with the benefit of lower experimental intensity, lower cost, and no need for a priori selection of sampling times. This method is demonstrated by the characterization of four membrane engineering strategies (deletion of aas, deletion of cfa, increased expression of cfa, and deletion of bhsA) for their effect on octanoic acid tolerance, with the finding that deletion of bhsA increased tolerance and substantially decreased membrane leakage.


Assuntos
Caprilatos/toxicidade , Permeabilidade da Membrana Celular/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Citometria de Fluxo/métodos , Bioengenharia/métodos , Caprilatos/metabolismo , Membrana Celular/efeitos dos fármacos , Membrana Celular/metabolismo , Escherichia coli/metabolismo , Compostos Orgânicos/metabolismo
16.
J Ind Microbiol Biotechnol ; 46(1): 33-43, 2019 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-30413923

RESUMO

Lactose conversion by lactic acid bacteria is of high industrial relevance and consistent starter culture quality is of outmost importance. We observed that Lactococcus lactis using the high-affinity lactose-phosphotransferase system excreted galactose towards the end of the lactose consumption phase. The excreted galactose was re-consumed after lactose depletion. The lacS gene, known to encode a lactose permease with affinity for galactose, a putative galactose-lactose antiporter, was upregulated under the conditions studied. When transferring cells from anaerobic to respiration-permissive conditions, lactose-assimilating strains exhibited a long and non-reproducible lag phase. Through systematic preculture experiments, the presence of galactose in the precultures was correlated to short and reproducible lag phases in respiration-permissive main cultivations. For starter culture production, the presence of galactose during propagation of dairy strains can provide a physiological marker for short culture lag phase in lactose-grown cultures.


Assuntos
Galactose/metabolismo , Lactococcus lactis/metabolismo , Lactose/metabolismo , Reatores Biológicos , Meios de Cultura/química , Regulação Bacteriana da Expressão Gênica , Microbiologia Industrial , Proteínas de Membrana Transportadoras/genética , Proteínas de Membrana Transportadoras/metabolismo , RNA Bacteriano/genética , RNA Bacteriano/isolamento & purificação , beta-Galactosidase/metabolismo
17.
Molecules ; 24(22)2019 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-31744042

RESUMO

Six γ-oxa-ε-lactones, 4-phenyl-3,4-dihydro-2H-1,5-benzodioxepin-2-one (5a) and its five derivatives with methoxy groups in different positions of A and B rings (5b-f), were synthesized from corresponding flavanones. Three of the obtained lactones (5b,c,f) have not been previously described in the literature. Structures of all synthesized compounds were confirmed by complete spectroscopic analysis with the assignments of signals on 1H and 13C-NMR spectra to the corresponding atoms. In most cases, lactones 5a-f exerted an inhibitory effect on the growth of selected pathogenic bacteria (Escherichia coli, Bacillus subtilis, and Staphylococcus aureus), filamentous fungi (Fusarium graminearum, Aspergillus niger, and Alternaria sp.), and yeast (Candida albicans). The broadest spectrum of activity was observed for unsubstituted lactone 5a, which was particularly active against filamentous fungi and yeast. Lactones with methoxy groups in the 3' (5c) and 4' (5d) position of B ring were more active towards bacteria whereas lactone substituted in the 7 position of the A ring (5e) exhibited higher antifungal activity. In most cases, the introduction of lactone function increased the activity of the compound compared to its flavonoid precursors, chalcones 3a-e, and flavanones 4a-f.


Assuntos
Anti-Infecciosos/síntese química , Anti-Infecciosos/farmacologia , Técnicas de Química Sintética , Flavanonas/química , Lactonas/síntese química , Lactonas/farmacologia , Antibacterianos/síntese química , Antibacterianos/química , Antibacterianos/farmacologia , Anti-Infecciosos/química , Antifúngicos/síntese química , Antifúngicos/química , Antifúngicos/farmacologia , Lactonas/química , Testes de Sensibilidade Microbiana , Estrutura Molecular , Relação Estrutura-Atividade
18.
Extremophiles ; 22(4): 617-628, 2018 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-29594464

RESUMO

Heavy metal tolerance of two marine strains of Yarrowia lipolytica was tested on solid yeast extract peptone dextrose agar plates. Based on minimum inhibitory concentration esteems, it is inferred that the two strains of Y. lipolytica were tolerant to heavy metals such as Pb(II), Cr(III), Zn(II), Cu(II), As(V), and Ni(II) ions. The impact of various heavy metal concentrations on the growth kinetics of Y. lipolytica was likewise assessed. With increased heavy metal concentration, the specific growth rate was reduced with delayed doubling time. Furthermore, biofilm development of both yeasts on the glass surfaces and in microtitre plates was assessed in presence of different heavy metals. In microtitre plates, a short lag phase of biofilm formation was noticed without the addition of heavy metals in yeast nitrogen base liquid media. A lag phase was extended over increasing metal concentrations of media. Heavy metals like Cr(VI), Cd(II), and As(V) are contrastingly influenced on biofilms' formation of microtitre plates. Other heavy metals did not much influence on biofilms development. Thus, biofilm formation is a strategy of Y. lipolytica under stress of heavy metals has significance in bioremediation process for recovery of heavy metals from contaminated environment.


Assuntos
Biofilmes , Metais Pesados/toxicidade , Yarrowia/efeitos dos fármacos , Adaptação Fisiológica , Organismos Aquáticos/efeitos dos fármacos , Organismos Aquáticos/fisiologia , Yarrowia/fisiologia
19.
Am J Bot ; 105(3): 348-363, 2018 03.
Artigo em Inglês | MEDLINE | ID: mdl-29719043

RESUMO

PREMISE OF THE STUDY: Polyploidy or whole-genome duplication (WGD) pervades the evolutionary history of angiosperms. Despite extensive progress in our understanding of WGD, the role of these events in promoting diversification is still not well understood. We seek to clarify the possible association between WGD and diversification rates in flowering plants. METHODS: Using a previously published phylogeny spanning all land plants (31,749 tips) and WGD events inferred from analyses of the 1000 Plants (1KP) transcriptome data, we analyzed the association of WGDs and diversification rates following numerous WGD events across the angiosperms. We used a stepwise AIC approach (MEDUSA), a Bayesian mixture model approach (BAMM), and state-dependent diversification analyses (MuSSE) to investigate patterns of diversification. Sister-clade comparisons were used to investigate species richness after WGDs. KEY RESULTS: Based on the density of 1KP taxon sampling, 106 WGDs were unambiguously placed on the angiosperm phylogeny. We identified 334-530 shifts in diversification rates. We found that 61 WGD events were tightly linked to changes in diversification rates, and state-dependent diversification analyses indicated higher speciation rates for subsequent rounds of WGD. Additionally, 70 of 99 WGD events showed an increase in species richness compared to the sister clade. CONCLUSIONS: Forty-six of the 106 WGDs analyzed appear to be closely associated with upshifts in the rate of diversification in angiosperms. Shifts in diversification do not appear more likely than random within a four-node lag phase following a WGD; however, younger WGD events are more likely to be followed by an upshift in diversification than older WGD events.


Assuntos
Evolução Biológica , Duplicação Gênica , Genoma de Planta , Magnoliopsida/genética , Filogenia , Poliploidia , Teorema de Bayes , Evolução Molecular , Especiação Genética , Genômica/métodos , Modelos Genéticos , Especificidade da Espécie , Transcriptoma
20.
Appl Microbiol Biotechnol ; 102(8): 3779-3791, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29516146

RESUMO

Non-Saccharomyces yeast species, naturally found in grape must, may impact wine quality positively or negatively. In this study, a mixture of five non-Saccharomyces species (Torulaspora delbrueckii, Metschnikowia spp., Starmerella bacillaris (formerly called Candida zemplinina), Hanseniaspora uvarum, Pichia kluyveri), mimicking the composition of the natural non-Saccharomyces community found in grape must, was used for alcoholic fermentation. The impact of CO2 saturation of the grape juice was studied first on this mixture alone, and then in the presence of Saccharomyces cerevisiae. Two isogenic strains of this species were used: the first with a short and the second a long fermentation lag phase. This study demonstrated that saturating grape juice with CO2 had interesting potential as an oenological technique, inhibiting undesirable species (S. bacillaris and H. uvarum) and stimulating non-Saccharomyces of interest (T. delbrueckii and P. kluyveri). This stimulating effect was particularly marked when CO2 saturation was associated with the presence of S. cerevisiae with long fermentation lag phase. The direct consequence of this association was an enhancement of 3-SH levels in the resulting wine.


Assuntos
Dióxido de Carbono/farmacologia , Microbiologia de Alimentos/métodos , Vitis/microbiologia , Vinho/microbiologia , Leveduras/efeitos dos fármacos , Leveduras/metabolismo , Fermentação , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/metabolismo , Leveduras/crescimento & desenvolvimento
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