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1.
Cell ; 162(3): 474-5, 2015 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-26232218

RESUMO

The essential details of cellular interactions at synaptic level in the brain are still largely unknown. In this issue, Kasthuri et al. report new experimental and computational technologies for large-scale electron microscopy data collection and analysis, and through saturated reconstruction uncover synaptic connectional specificity that cannot be predicted by simple axonal-dendritic proximity.


Assuntos
Microscopia Eletrônica de Varredura/métodos , Microtomia/métodos , Neocórtex/ultraestrutura , Neurônios/ultraestrutura , Animais
2.
Cell ; 162(3): 648-61, 2015 Jul 30.
Artigo em Inglês | MEDLINE | ID: mdl-26232230

RESUMO

We describe automated technologies to probe the structure of neural tissue at nanometer resolution and use them to generate a saturated reconstruction of a sub-volume of mouse neocortex in which all cellular objects (axons, dendrites, and glia) and many sub-cellular components (synapses, synaptic vesicles, spines, spine apparati, postsynaptic densities, and mitochondria) are rendered and itemized in a database. We explore these data to study physical properties of brain tissue. For example, by tracing the trajectories of all excitatory axons and noting their juxtapositions, both synaptic and non-synaptic, with every dendritic spine we refute the idea that physical proximity is sufficient to predict synaptic connectivity (the so-called Peters' rule). This online minable database provides general access to the intrinsic complexity of the neocortex and enables further data-driven inquiries.


Assuntos
Microscopia Eletrônica de Varredura/métodos , Microtomia/métodos , Neocórtex/ultraestrutura , Neurônios/ultraestrutura , Animais , Automação , Axônios/ultraestrutura , Dendritos/ultraestrutura , Camundongos , Neocórtex/citologia , Sinapses/ultraestrutura , Vesículas Sinápticas/ultraestrutura
3.
Nat Methods ; 18(3): 309-315, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33649587

RESUMO

The microscopic visualization of large-scale three-dimensional (3D) samples by optical microscopy requires overcoming challenges in imaging quality and speed and in big data acquisition and management. We report a line-illumination modulation (LiMo) technique for imaging thick tissues with high throughput and low background. Combining LiMo with thin tissue sectioning, we further develop a high-definition fluorescent micro-optical sectioning tomography (HD-fMOST) method that features an average signal-to-noise ratio of 110, leading to substantial improvement in neuronal morphology reconstruction. We achieve a >30-fold lossless data compression at a voxel resolution of 0.32 × 0.32 × 1.00 µm3, enabling online data storage to a USB drive or in the cloud, and high-precision (95% accuracy) brain-wide 3D cell counting in real time. These results highlight the potential of HD-fMOST to facilitate large-scale acquisition and analysis of whole-brain high-resolution datasets.


Assuntos
Encéfalo/diagnóstico por imagem , Imageamento Tridimensional/métodos , Microscopia/métodos , Microtomia/métodos , Razão Sinal-Ruído , Tomografia/métodos
4.
Cell Tissue Res ; 396(1): 1-18, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38416172

RESUMO

Imaging technologies have played a pivotal role in advancing biological research by enabling visualization of biological structures and processes. While traditional electron microscopy (EM) produces two-dimensional images, emerging techniques now allow high-resolution three-dimensional (3D) characterization of specimens in situ, meeting growing needs in molecular and cellular biology. Combining transmission electron microscopy (TEM) with serial sectioning inaugurated 3D imaging, attracting biologists seeking to explore cell ultrastructure and driving advancement of 3D EM reconstruction. By comprehensively and precisely rendering internal structure and distribution, 3D TEM reconstruction provides unparalleled ultrastructural insights into cells and molecules, holding tremendous value for elucidating structure-function relationships and broadly propelling structural biology. Here, we first introduce the principle of 3D reconstruction of cells and tissues by classical approaches in TEM and then discuss modern technologies utilizing TEM and on new SEM-based as well as cryo-electron microscope (cryo-EM) techniques. 3D reconstruction techniques from serial sections, electron tomography (ET), and the recent single-particle analysis (SPA) are examined; the focused ion beam scanning electron microscopy (FIB-SEM), the serial block-face scanning electron microscopy (SBF-SEM), and automatic tape-collecting lathe ultramicrotome (ATUM-SEM) for 3D reconstruction of large volumes are discussed. Finally, we review the challenges and development prospects of these technologies in life science. It aims to provide an informative reference for biological researchers.


Assuntos
Imageamento Tridimensional , Microtomia , Imageamento Tridimensional/métodos , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Microtomia/métodos , Microscopia Crioeletrônica
5.
J Microsc ; 289(2): 107-127, 2023 02.
Artigo em Inglês | MEDLINE | ID: mdl-36399637

RESUMO

The correlative imaging workflow is a method of combining information and data across modes (e.g. SEM, X-ray CT, FIB-SEM), scales (cm to nm) and dimensions (2D-3D-4D), providing a more holistic interpretation of the research question. Often, subsurface objects of interest (e.g. inclusions, pores, cracks, defects in multilayered samples) are identified from initial exploratory nondestructive 3D tomographic imaging (e.g. X-ray CT, XRM), and those objects need to be studied using additional techniques to obtain, for example, 2D chemical or crystallographic data. Consequently, an intermediate sample preparation step needs to be completed, where a targeted amount of sample surface material is removed, exposing and revealing the object of interest. At present, there is not one singular technique for removing varied thicknesses at high resolution and on a range of scales from cm to nm. Here, we review the manual and automated options currently available for targeted sample material removal, with a focus on those methods which are readily accessible in most laboratories. We summarise the approaches for manual grinding and polishing, automated grinding and polishing, microtome/ultramicrotome, and broad-beam ion milling (BBIM), with further review of other more specialist techniques including serial block face electron microscopy (SBF-SEM), and ion milling and laser approaches such as FIB-SEM, Xe plasma FIB-SEM, and femtosecond laser/LaserFIB. We also address factors which may influence the decision on a particular technique, including the composition, shape and size of the samples, sample mounting limitations, the amount of surface material to be removed, the accuracy and/or resolution of peripheral parts, the accuracy and/or resolution of the technique/instrumentation, and other more general factors such as accessibility to instrumentation, costs, and the time taken for experimentation. It is hoped that this study will provide researchers with a range of options for removal of specific amounts of sample surface material to reach subsurface objects of interest in both correlative and non-correlative workflows.


Assuntos
Técnicas Histológicas , Imageamento Tridimensional , Microscopia Eletrônica de Varredura , Fluxo de Trabalho , Imageamento Tridimensional/métodos , Técnicas Histológicas/métodos , Microtomia
6.
J Biol Chem ; 296: 100168, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33298522

RESUMO

Antibodies against Aß amyloid are indispensable research tools and potential therapeutics for Alzheimer's disease. They display several unusual properties, such as specificity for aggregated forms of the peptide, the ability to distinguish polymorphic aggregate structures, and the ability to recognize generic aggregation-related epitopes formed by unrelated amyloid sequences. Understanding the mechanisms underlying these unusual properties and the structures of their corresponding epitopes is crucial for the understanding why antibodies display different therapeutic activities and for the development of more effective therapeutic agents. Here we employed a novel "epitomic" approach to map the fine structure of the epitopes of 28 monoclonal antibodies against amyloid-beta using immunoselection of random sequences from a phage display library, deep sequencing, and pattern analysis to define the critical sequence elements recognized by the antibodies. Although most of the antibodies map to major linear epitopes in the amino terminal 1 to 14 residues of Aß, the antibodies display differences in the target sequence residues that are critical for binding and in their individual preferences for nontarget residues, indicating that the antibodies bind to alternative conformations of the sequence by different mechanisms. Epitomic analysis also identifies discontinuous, nonoverlapping sequence Aß segments that may constitute the conformational epitopes that underlie the aggregation specificity of antibodies. Aggregation-specific antibodies recognize sequences that display a significantly higher predicted propensity for forming amyloid than antibodies that recognize the monomer, indicating that the ability of random sequences to aggregate into amyloid is a critical element of their binding mechanism.


Assuntos
Doença de Alzheimer/metabolismo , Peptídeos beta-Amiloides/metabolismo , Anticorpos Monoclonais/metabolismo , Mapeamento de Epitopos/métodos , Epitopos/metabolismo , Fragmentos de Peptídeos/metabolismo , Placa Amiloide/metabolismo , Doença de Alzheimer/diagnóstico , Doença de Alzheimer/patologia , Sequência de Aminoácidos , Peptídeos beta-Amiloides/química , Anticorpos Monoclonais/química , Sítios de Ligação , Encéfalo/metabolismo , Encéfalo/patologia , Epitopos/química , Humanos , Microtomia , Neurônios/metabolismo , Neurônios/patologia , Fragmentos de Peptídeos/química , Biblioteca de Peptídeos , Placa Amiloide/patologia , Agregados Proteicos , Análise Serial de Proteínas , Ligação Proteica
7.
Anal Bioanal Chem ; 414(23): 6947-6954, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35953724

RESUMO

Cholesterol is essential to all animal life, and its dysregulation is observed in many diseases. For some of these, the precise determination of cholesterol's histological location and absolute abundance at cellular length scales within tissue samples would open the door to a more fundamental understanding of the role of cholesterol in disease onset and progression. We have developed a fast and simple method for absolute quantification of cholesterol within brain samples based on the sensitive detection and mapping of cholesterol by silver-assisted laser desorption ionization mass spectrometry imaging (AgLDI MSI) from thin tissue sections. Reproducible calibration curves were generated by depositing a range of cholesterol-D7 concentrations on brain homogenate tissue sections combined with the homogeneous spray deposition of a non-animal steroid reference standard detectable by AgLDI MSI to minimize experimental variability. Results obtained from serial brain sections gave consistent cholesterol quantitative values in very good agreement with those obtained with other mass spectrometry-based methods.


Assuntos
Microtomia , Prata , Colesterol , Lasers , Prata/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos
8.
Adv Exp Med Biol ; 1388: 113-127, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36104618

RESUMO

The origin of histology-the study of microscopic anatomy-is intimately connected with the development of the light microscope and improvements in lens design and manufacture.However, knowledge of the ultrastructure of the cell was hampered by the very nature of light microscopy, which, due to the physical properties of the visible electromagnetic spectrum, could never provide the magnification and resolution for study of the granules seen in cells, which we now know as the organelles. When the electron microscope was developed in the 1930s, a beam of electrons replaced light as the source of illumination, and the inner details of the cell could be observed directly. With thin sections obtained by transmission electron microscopy, cell biologists could embark on the task of reconstructing 3D microstructure via the painstaking stacking of the individual slices.The three-dimensional visualization of the mitochondrion was particularly challenging, as its convoluted structure could be interpreted in several ways based on differences observed by George Palade at the Rockefeller Institute for Medical Research (NYC), and Fritiof Sjöstrand at the Karolinska Institutet (Stockholm). Palade's interpretation was eventually accepted as correct due to its alignment with the findings of biochemists investigating the cascade of molecular interactions known as the Krebs cycle, responsible for the production of cellular energy in the form of adenosine triphosphate (ATP). However, it can also be argued that Palade's visualization via a physical model of the mitochondrion, which he built with sheets of wax, photographed, and published in 1953, better enabled colleagues to comprehend its unique inner structures known as cristae.To teach undergraduate science students about this pivotal moment in cell biology and add to their understanding of the reconstruction process, a pedagogical exercise was created in which students are provided with outline drawings of various organic objects cut in random planes of section. Working individually at first, and then in groups, they are tasked with collaborating to devise an accurate description of the shape and texture of the object. After their observations are presented to the class, they are shown a photo of the object prior to its sectioning to determine if their observations were correct.


Assuntos
Momordica charantia , Humanos , Masculino , Microscopia Eletrônica de Transmissão , Microtomia , Mitocôndrias/ultraestrutura , Membranas Mitocondriais
9.
PLoS Biol ; 16(8): e2003816, 2018 08.
Artigo em Inglês | MEDLINE | ID: mdl-30125271

RESUMO

Dendrodendritic synaptic interactions between olfactory bulb mitral and granule cells represent a key neuronal mechanism of odor discrimination. Dendritic release of gamma-aminobutyric acid (GABA) from granule cells contributes to stimulus-dependent, rapid, and accurate odor discrimination, yet the physiological mechanisms governing this release and its behavioral relevance are unknown. Here, we show that granule cells express the voltage-gated sodium channel α-subunit NaV1.2 in clusters distributed throughout the cell surface including dendritic spines. Deletion of NaV1.2 in granule cells abolished spiking and GABA release as well as inhibition of synaptically connected mitral cells (MCs). As a consequence, mice required more time to discriminate highly similar odorant mixtures, while odor discrimination learning remained unaffected. In conclusion, we show that expression of NaV1.2 in granule cells is crucial for physiological dendritic GABA release and rapid discrimination of similar odorants with high accuracy. Hence, our data indicate that neurotransmitter-releasing dendritic spines function just like axon terminals.


Assuntos
Axônios/fisiologia , Dendritos/fisiologia , Canal de Sódio Disparado por Voltagem NAV1.2/genética , Odorantes/análise , Bulbo Olfatório/fisiologia , Percepção Olfatória/fisiologia , Potenciais de Ação/fisiologia , Animais , Axônios/ultraestrutura , Dendritos/ultraestrutura , Aprendizagem por Discriminação/fisiologia , Expressão Gênica , Camundongos , Camundongos Endogâmicos C57BL , Microtomia , Canal de Sódio Disparado por Voltagem NAV1.2/metabolismo , Neurotransmissores/metabolismo , Bulbo Olfatório/citologia , RNA Interferente Pequeno/genética , RNA Interferente Pequeno/metabolismo , Células Receptoras Sensoriais/fisiologia , Células Receptoras Sensoriais/ultraestrutura , Sinapses/fisiologia , Transmissão Sináptica/fisiologia , Técnicas de Cultura de Tecidos , Ácido gama-Aminobutírico/metabolismo
10.
J Microsc ; 281(2): 138-156, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-32737879

RESUMO

The introduction of cryo-techniques to the focused ion-beam scanning electron microscope (FIB-SEM) has brought new opportunities to study frozen, hydrated samples from the field of Life Sciences. Cryo-techniques have long been employed in electron microscopy. Thin electron transparent sections are produced by cryo-ultramicrotomy for observation in a cryo-transmission electron microscope (TEM). Cryo-TEM is presently reaching the imaging of macromolecular structures. In parallel, cryo-fractured surfaces from bulk materials have been investigated by cryo-SEM. Both cryo-TEM and cryo-SEM have provided a wealth of information, despite being 2D techniques. Cryo-TEM tomography does provide 3D information, but the thickness of the volume has a maximum of 200-300 nm, which limits the 3D information within the context of specific structures. FIB-milling enables imaging additional planes by creating cross-sections (e.g. cross-sectioning or site-specific X-sectioning) perpendicular to the cryo-fracture surface, thus adding a third imaging dimension to the cryo-SEM. This paper discusses how to produce suitable cryo-FIB-SEM cross-section results from frozen, hydrated Life Science samples with emphasis on 'common knowledge' and reoccurring observations. LAY DESCRIPTION: Life Sciences studies life down to the smallest details. Visualising the smallest details requires electron microscopy, which utilises high-vacuum chambers. One method to maintain the integrity of Life Sciences samples under vacuum conditions is freezing. Frozen samples can remain in a suspended state. As a result, research can be carried out without having to change the chemistry or internal physical structure of the samples. Two types of electron microscopes equipped with cryo-sample handling facilities are used to investigate samples: The scanning electron microscope (SEM) which investigates surfaces and the transmission electron microscope (TEM) which investigates thin electron transparent sections (called lamellae). A third method of investigation combines a SEM with a focused ion beam (FIB) to form a cryo-FIB-SEM, which is the basis of this paper. The electron beam images the cryo-sample surface while the ion beam mills into the surface to expose the interior of the sample. The latter is called cross-sectioning and the result provides a way of investigating the 3rd dimension of the sample. This paper looks at the making of cross-sections in this manner originating from knowledge and experience gained with this technique over many years. This information is meant for newcomers, and experienced researchers in cryo-microscopy alike.


Assuntos
Disciplinas das Ciências Biológicas , Tomografia com Microscopia Eletrônica , Microscopia Crioeletrônica , Microscopia Eletrônica , Microtomia
11.
Anal Bioanal Chem ; 413(10): 2683-2694, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32930817

RESUMO

In the past decades, matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) has been applied to a broad range of biological samples, e.g., forensics and preclinical samples. The use of MALDI-MSI for the analysis of bone tissue has been limited due to the insulating properties of the material but more importantly the absence of a proper sample preparation protocol for undecalcified bone tissue. Undecalcified sections are preferred to retain sample integrity as much as possible or to study the tissue-bone bio interface in particular. Here, we optimized the sample preparation protocol of undecalcified bone samples, aimed at both targeted and untargeted applications for forensic and preclinical applications, respectively. Different concentrations of gelatin and carboxymethyl cellulose (CMC) were tested as embedding materials. The composition of 20% gelatin and 7.5% CMC showed to support the tissue best while sectioning. Bone tissue has to be sectioned with a tungsten carbide knife in a longitudinal fashion, while the sections need to be supported with double-sided tapes to maintain the morphology of the tissue. The developed sectioning method was shown to be applicable on rat and mouse as well as human bone samples. Targeted (methadone and EDDP) as well as untargeted (unknown lipids) detection was demonstrated. DHB proved to be the most suitable matrix for the detection of methadone and EDDP in positive ion mode. The limit of detection (LOD) is estimated to approximately 50 pg/spot on bone tissue. The protocol was successfully applied to detect the presence of methadone and EDDP in a dosed rat femur and a dosed human clavicle. The best matrices for the untargeted detection of unknown lipids in mouse hind legs in positive ion mode were CHCA and DHB based on the number of tissue-specific peaks and signal-to-noise ratios. The developed and optimized sample preparation method, applicable on animal and human bones, opens the door for future forensic and (pre)clinical investigations.


Assuntos
Osso e Ossos/química , Lipídeos/análise , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Inclusão do Tecido/métodos , Animais , Carboximetilcelulose Sódica/química , Medicina Legal/métodos , Gelatina/química , Masculino , Microtomia/métodos , Ratos Wistar
12.
Anal Bioanal Chem ; 413(10): 2709-2719, 2021 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-33206215

RESUMO

We report a multiplexed imaging mass spectrometry method which spatially localizes and selectively accesses the extracellular matrix on formalin-fixed paraffin-embedded tissue sections. The extracellular matrix (ECM) consists of (1) fibrous proteins, post-translationally modified (PTM) via N- and O-linked glycosylation, as well as hydroxylation on prolines and lysines, and (2) glycosaminoglycan-decorated proteoglycans. Accessing all these components poses a unique analytical challenge. Conventional peptide analysis via trypsin inefficiently captures ECM peptides due to their low abundance, intra- and intermolecular cross-linking, and PTMs. In previous studies, we have developed matrix-assisted laser desorption ionization imaging mass spectrometry (MALDI-IMS) techniques to capture collagen peptides via collagenase type III digestion, both alone and after N-glycan removal via PNGaseF digest. However, in fibrotic tissues, the buildup of ECM components other than collagen-type proteins, including elastin and glycosaminoglycans, limits efficacy of any single enzyme to access the complex ECM. Here, we have developed a novel serial enzyme strategy to define the extracellular matrix, including PTMs, from a single tissue section for MALDI-IMS applications. Graphical Abstract.


Assuntos
Matriz Extracelular/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Valva Aórtica/química , Colágeno/análise , Elastina/análise , Proteínas da Matriz Extracelular/análise , Formaldeído , Humanos , Microtomia , Inclusão em Parafina , Polissacarídeos/análise , Fixação de Tecidos
13.
Proc Natl Acad Sci U S A ; 115(41): 10239-10244, 2018 10 09.
Artigo em Inglês | MEDLINE | ID: mdl-30224483

RESUMO

Biodegradable polymers open the way to treatment of heart disease using transient implants (bioresorbable vascular scaffolds, BVSs) that overcome the most serious complication associated with permanent metal stents-late stent thrombosis. Here, we address the long-standing paradox that the clinically approved BVS maintains its radial strength even after 9 mo of hydrolysis, which induces a ∼40% decrease in the poly l-lactide molecular weight (Mn). X-ray microdiffraction evidence of nonuniform hydrolysis in the scaffold reveals that regions subjected to tensile stress during crimping develop a microstructure that provides strength and resists hydrolysis. These beneficial morphological changes occur where they are needed most-where stress is localized when a radial load is placed on the scaffold. We hypothesize that the observed decrease in Mn reflects the majority of the material, which is undeformed during crimping. Thus, the global measures of degradation may be decoupled from the localized, degradation-resistant regions that confer the ability to support the artery for the first several months after implantation.


Assuntos
Implantes Absorvíveis , Poliésteres/química , Alicerces Teciduais/química , Hidrólise , Teste de Materiais , Microscopia Eletrônica de Varredura , Microtomia , Peso Molecular , Difração de Raios X
14.
Int J Mol Sci ; 22(8)2021 Apr 20.
Artigo em Inglês | MEDLINE | ID: mdl-33924132

RESUMO

Immuno-electron microscopy (Immuno-EM) is a powerful tool for identifying molecular targets with ultrastructural details in biological specimens. However, technical barriers, such as the loss of ultrastructural integrity, the decrease in antigenicity, or artifacts in the handling process, hinder the widespread use of the technique by biomedical researchers. We developed a method to overcome such challenges by combining light and electron microscopy with immunolabeling based on Tokuyasu's method. Using cryo-sectioned biological specimens, target proteins with excellent antigenicity were first immunolabeled for confocal analysis, and then the same tissue sections were further processed for electron microscopy, which provided a well-preserved ultrastructure comparable to that obtained using conventional electron microscopy. Moreover, this method does not require specifically designed correlative light and electron microscopy (CLEM) devices but rather employs conventional confocal and electron microscopes; therefore, it can be easily applied in many biomedical studies.


Assuntos
Microscopia Crioeletrônica , Secções Congeladas , Microscopia de Fluorescência , Microtomia , Encéfalo/citologia , Encéfalo/metabolismo , Encéfalo/ultraestrutura , Linhagem Celular , Células Cultivadas , Microscopia Crioeletrônica/instrumentação , Microscopia Crioeletrônica/métodos , Humanos , Microscopia de Fluorescência/instrumentação , Microscopia de Fluorescência/métodos , Microtomia/métodos
15.
Int J Mol Sci ; 22(13)2021 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-34281187

RESUMO

Thirty-five years ago, precision-cut liver slices (PCLS) were described as a promising tool and were expected to become the standard in vitro model to study liver disease as they tick off all characteristics of a good in vitro model. In contrast to most in vitro models, PCLS retain the complex 3D liver structures found in vivo, including cell-cell and cell-matrix interactions, and therefore should constitute the most reliable tool to model and to investigate pathways underlying chronic liver disease in vitro. Nevertheless, the biggest disadvantage of the model is the initiation of a procedure-induced fibrotic response. In this review, we describe the parameters and potential of PCLS cultures and discuss whether the initially described limitations and pitfalls have been overcome. We summarize the latest advances in PCLS research and critically evaluate PCLS use and progress since its invention in 1985.


Assuntos
Fígado/patologia , Microtomia/métodos , Técnicas de Cultura de Tecidos/métodos , Animais , Humanos , Fígado/citologia , Fígado/metabolismo , Hepatopatias/metabolismo , Hepatopatias/patologia , Modelos Biológicos , Guias de Prática Clínica como Assunto
16.
Int J Mol Sci ; 22(5)2021 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-33800802

RESUMO

Multiphoton microscopy has recently passed the milestone of its first 30 years of activity in biomedical research. The growing interest around this approach has led to a variety of applications from basic research to clinical practice. Moreover, this technique offers the advantage of label-free multiphoton imaging to analyze samples without staining processes and the need for a dedicated system. Here, we review the state of the art of label-free techniques; then, we focus on two-photon autofluorescence as well as second and third harmonic generation, describing physical and technical characteristics. We summarize some successful applications to a plethora of biomedical research fields and samples, underlying the versatility of this technique. A paragraph is dedicated to an overview of sample preparation, which is a crucial step in every microscopy experiment. Afterwards, we provide a detailed review analysis of the main quantitative methods to extract important information and parameters from acquired images using second harmonic generation. Lastly, we discuss advantages, limitations, and future perspectives in label-free multiphoton microscopy.


Assuntos
Microscopia de Fluorescência por Excitação Multifotônica/métodos , Absorção de Radiação , Anisotropia , Análise de Fourier , Microscopia de Polarização/métodos , Microtomia/métodos , Imagem Óptica/métodos , Fotodegradação , Fótons , Microscopia de Geração do Segundo Harmônico/métodos , Manejo de Espécimes/métodos , Fixação de Tecidos/métodos , Análise de Ondaletas
17.
Int J Mol Sci ; 22(9)2021 May 04.
Artigo em Inglês | MEDLINE | ID: mdl-34064311

RESUMO

Dephosphorylation of target proteins at serine/threonine residues is one of the most crucial mechanisms regulating their activity and, consequently, the cellular functions. The role of phosphatases in synaptic plasticity, especially in long-term depression or depotentiation, has been reported. We studied serine/threonine phosphatase activity during the protein synthesis blocker (PSB)-induced impairment of long-term potentiation (LTP). Established protein phosphatase 2B (PP2B, calcineurin) inhibitor cyclosporin A prevented the LTP early phase (E-LTP) decline produced by pretreatment of hippocampal slices with cycloheximide or anisomycin. For the first time, we directly measured serine/threonine phosphatase activity during E-LTP, and its significant increase in PSB-treated slices was demonstrated. Nitric oxide (NO) donor SNAP also heightened phosphatase activity in the same manner as PSB, and simultaneous application of anisomycin + SNAP had no synergistic effect. Direct measurement of the NO production in hippocampal slices by the NO-specific fluorescent probe DAF-FM revealed that PSBs strongly stimulate the NO concentration in all studied brain areas: CA1, CA3, and dentate gyrus (DG). Cyclosporin A fully abolished the PSB-induced NO production in the hippocampus, suggesting a close relationship between nNOS and PP2B activity. Surprisingly, cyclosporin A alone impaired short-term plasticity in CA1 by decreasing paired-pulse facilitation, which suggests bi-directionality of the influences of PP2B in the hippocampus. In conclusion, we proposed a minimal model of signaling events that occur during LTP induction in normal conditions and the PSB-treated slices.


Assuntos
Região CA1 Hipocampal/metabolismo , Região CA3 Hipocampal/metabolismo , Calcineurina/genética , Potenciação de Longa Duração/genética , Potenciais Sinápticos/genética , Animais , Anisomicina/farmacologia , Região CA1 Hipocampal/citologia , Região CA1 Hipocampal/efeitos dos fármacos , Região CA3 Hipocampal/citologia , Região CA3 Hipocampal/efeitos dos fármacos , Calcineurina/metabolismo , Inibidores de Calcineurina/farmacologia , Cicloeximida/farmacologia , Ciclosporina/farmacologia , Giro Denteado/citologia , Giro Denteado/efeitos dos fármacos , Giro Denteado/metabolismo , Regulação da Expressão Gênica , Potenciação de Longa Duração/efeitos dos fármacos , Masculino , Microtomia , Plasticidade Neuronal/efeitos dos fármacos , Plasticidade Neuronal/genética , Óxido Nítrico/química , Óxido Nítrico/farmacologia , Óxido Nítrico Sintase Tipo I/genética , Óxido Nítrico Sintase Tipo I/metabolismo , Biossíntese de Proteínas/efeitos dos fármacos , Biossíntese de Proteínas/genética , Inibidores da Síntese de Proteínas/farmacologia , Ratos , Ratos Wistar , S-Nitroso-N-Acetilpenicilamina/química , S-Nitroso-N-Acetilpenicilamina/farmacologia , Potenciais Sinápticos/efeitos dos fármacos , Técnicas de Cultura de Tecidos
18.
Am J Respir Cell Mol Biol ; 62(6): 681-691, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-31991090

RESUMO

Chronic lung diseases (CLDs), such as chronic obstructive pulmonary disease, interstitial lung disease, and lung cancer, are among the leading causes of morbidity globally and impose major health and financial burdens on patients and society. Effective treatments are scarce, and relevant human model systems to effectively study CLD pathomechanisms and thus discover and validate potential new targets and therapies are needed. Precision-cut lung slices (PCLS) from healthy and diseased human tissue represent one promising tool that can closely recapitulate the complexity of the lung's native environment, and recently, improved methodologies and accessibility to human tissue have led to an increased use of PCLS in CLD research. Here, we discuss approaches that use human PCLS to advance our understanding of CLD development, as well as drug discovery and validation for CLDs. PCLS enable investigators to study complex interactions among different cell types and the extracellular matrix in the native three-dimensional architecture of the lung. PCLS further allow for high-resolution (live) imaging of cellular functions in several dimensions. Importantly, PCLS can be derived from diseased lung tissue upon lung surgery or transplantation, thus allowing the study of CLDs in living human tissue. Moreover, CLDs can be modeled in PCLS derived from normal lung tissue to mimic the onset and progression of CLDs, complementing studies in end-stage diseased tissue. Altogether, PCLS are emerging as a remarkable tool to further bridge the gap between target identification and translation into clinical studies, and thus open novel avenues for future precision medicine approaches.


Assuntos
Pneumopatias/patologia , Pulmão/patologia , Microtomia/métodos , Manejo de Espécimes/métodos , Animais , Modelos Animais de Doenças , Descoberta de Drogas , Avaliação Pré-Clínica de Medicamentos , Humanos , Fibrose Pulmonar Idiopática/patologia , Neoplasias Pulmonares/patologia , Camundongos , Doença Pulmonar Obstrutiva Crônica/patologia
19.
Am J Physiol Cell Physiol ; 319(5): C858-C876, 2020 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-32783659

RESUMO

Human skeletal muscle is a heterogeneous tissue composed of multiple fiber types that express unique contractile and metabolic properties. While analysis of mixed fiber samples predominates and holds value, increasing attention has been directed toward studying proteins segregated by fiber type, a methodological distinction termed "fiber type-specific." Fiber type-specific protein studies have the advantage of uncovering key molecular effects that are often missed in mixed fiber homogenate studies but also require greater time and resource-intensive methods, particularly when applied to human muscle. This review summarizes and compares current methods used for fiber type-specific protein analysis, highlighting their advantages and disadvantages for human muscle studies, in addition to recent advances in these techniques. These methods can be grouped into three categories based on the initial processing of the tissue: 1) muscle-specific fiber homogenates, 2) cross sections of fiber bundles, and 3) isolated single fibers, with various subtechniques for performing fiber type identification and protein quantification. The relative implementation for each unique methodological approach is analyzed from 83 fiber type-specific studies of proteins in live human muscle found in the literature to date. These studies have investigated several proteins involved in a wide range of cellular functions that are important to muscle tissue. The second half of this review summarizes key findings from this ensemble of fiber type-specific human protein studies. We highlight examples of where this analytical approach has helped to improve understanding of important physiological topics such as insulin sensitivity, muscle hypertrophy, muscle fatigue, and adaptation to different exercise programs.


Assuntos
Hipertrofia/fisiopatologia , Fadiga Muscular/fisiologia , Fibras Musculares de Contração Rápida/fisiologia , Fibras Musculares de Contração Lenta/fisiologia , Proteínas Musculares/genética , Doenças Musculares/fisiopatologia , Misturas Complexas/química , Exercício Físico/fisiologia , Expressão Gênica , Humanos , Hipertrofia/genética , Hipertrofia/metabolismo , Resistência à Insulina/fisiologia , Microtomia/métodos , Proteínas Musculares/classificação , Proteínas Musculares/metabolismo , Doenças Musculares/genética , Doenças Musculares/metabolismo , Especificidade de Órgãos , Resistência Física/fisiologia
20.
Hum Mol Genet ; 27(8): 1396-1410, 2018 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-29432535

RESUMO

Among the many types of neurons expressing protein kinase C (PKC) enzymes, cerebellar Purkinje neurons are particularly reliant on appropriate PKC activity for maintaining homeostasis. The importance of PKC enzymes in Purkinje neuron health is apparent as mutations in PRKCG (encoding PKCγ) cause cerebellar ataxia. PRKCG has also been identified as an important node in ataxia gene networks more broadly, but the functional role of PKC in other forms of ataxia remains unexplored, and the mechanisms by which PKC isozymes regulate Purkinje neuron health are not well understood. Here, we investigated how PKC activity influences neurodegeneration in inherited ataxia. Using mouse models of spinocerebellar ataxia type 1 (SCA1) and 2 (SCA2) we identify an increase in PKC-mediated substrate phosphorylation in two different forms of inherited cerebellar ataxia. Normalizing PKC substrate phosphorylation in SCA1 and SCA2 mice accelerates degeneration, suggesting that the increased activity observed in these models is neuroprotective. We also find that increased phosphorylation of PKC targets limits Purkinje neuron membrane excitability, suggesting that PKC activity may support Purkinje neuron health by moderating excitability. These data suggest a functional role for PKC enzymes in ataxia gene networks, and demonstrate that increased PKC activity is a protective modifier of degeneration in inherited cerebellar ataxia.


Assuntos
Ataxina-1/genética , Ataxina-2/genética , Proteína Quinase C/genética , Células de Purkinje/enzimologia , Ataxias Espinocerebelares/genética , Animais , Ataxina-1/metabolismo , Ataxina-2/metabolismo , Cerebelo/enzimologia , Cerebelo/patologia , Modelos Animais de Doenças , Regulação da Expressão Gênica , Humanos , Camundongos , Camundongos Transgênicos , Microtomia , Fosforilação , Cultura Primária de Células , Proteína Quinase C/metabolismo , Células de Purkinje/patologia , Transdução de Sinais , Ataxias Espinocerebelares/enzimologia , Ataxias Espinocerebelares/patologia , Ataxias Espinocerebelares/prevenção & controle , Técnicas de Cultura de Tecidos
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