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A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.
Zhao, Huaying; Ghirlando, Rodolfo; Alfonso, Carlos; Arisaka, Fumio; Attali, Ilan; Bain, David L; Bakhtina, Marina M; Becker, Donald F; Bedwell, Gregory J; Bekdemir, Ahmet; Besong, Tabot M D; Birck, Catherine; Brautigam, Chad A; Brennerman, William; Byron, Olwyn; Bzowska, Agnieszka; Chaires, Jonathan B; Chaton, Catherine T; Cölfen, Helmut; Connaghan, Keith D; Crowley, Kimberly A; Curth, Ute; Daviter, Tina; Dean, William L; Díez, Ana I; Ebel, Christine; Eckert, Debra M; Eisele, Leslie E; Eisenstein, Edward; England, Patrick; Escalante, Carlos; Fagan, Jeffrey A; Fairman, Robert; Finn, Ron M; Fischle, Wolfgang; de la Torre, José García; Gor, Jayesh; Gustafsson, Henning; Hall, Damien; Harding, Stephen E; Cifre, José G Hernández; Herr, Andrew B; Howell, Elizabeth E; Isaac, Richard S; Jao, Shu-Chuan; Jose, Davis; Kim, Soon-Jong; Kokona, Bashkim; Kornblatt, Jack A; Kosek, Dalibor.
Afiliação
  • Zhao H; Dynamics of Macromolecular Assembly Section, Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health, Bethesda, Maryland, 20892, United States of America.
  • Ghirlando R; Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland, 20892, United States of America.
  • Alfonso C; Analytical Ultracentrifugacion and Light Scattering Facility, Centro de Investigaciones Biológicas, CSIC, Madrid, 28040, Spain.
  • Arisaka F; Life Science Research Center, Nihon University, College of Bioresource Science, Fujisawa, 252-0880, Japan.
  • Attali I; Department of Biochemistry and Molecular Biology, Tel Aviv University, Tel Aviv, 69978, Israel.
  • Bain DL; Department of Pharmaceutical Sciences, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado, 80045, United States of America.
  • Bakhtina MM; Department of Chemistry and Biochemistry, Center for Retrovirus Research, and Center for RNA Biology, The Ohio State University, Columbus, Ohio, 43210, United States of America.
  • Becker DF; Redox Biology Center, University of Nebraska-Lincoln, Lincoln, Nebraska, 68588, United States of America.
  • Bedwell GJ; Department of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama, 35294, United States of America.
  • Bekdemir A; Supramolecular Nanomaterials and Interfaces Laboratory, Institute of Materials, École Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland.
  • Besong TM; National Centre for Macromolecular Hydrodynamics, University of Nottingham, School of Biosciences, Sutton Bonington, LE12 5RD, United Kingdom.
  • Birck C; Structural Biology Platform IGBMC, Illkirch, 67400, France.
  • Brautigam CA; Department of Biophysics, The University of Texas Southwestern Medical Center, Dallas, Texas, 75390, United States of America.
  • Brennerman W; Beckman Coulter, Inc., Life Science Division, Indianapolis, Indiana, 46268, United States of America.
  • Byron O; School of Life Sciences, University of Glasgow, Glasgow, G37TT, United Kingdom.
  • Bzowska A; Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Warsaw, 02-089, Poland.
  • Chaires JB; JG Brown Cancer Center, University of Louisville, Louisville, Kentucky, 40202, United States of America.
  • Chaton CT; Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio, 45267, United States of America.
  • Cölfen H; Physical Chemistry, University of Konstanz, 78457, Konstanz, Germany.
  • Connaghan KD; Department of Pharmaceutical Sciences, University of Colorado Denver Anschutz Medical Campus, Aurora, Colorado, 80045, United States of America.
  • Crowley KA; Program in Molecular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, 01605, United States of America.
  • Curth U; Institute for Biophysical Chemistry, Hannover Medical School, 30625, Hannover, Germany.
  • Daviter T; Institute of Structural and Molecular Biology Biophysics Centre, Birkbeck, University of London and University College London, London, WC1E 7HX, United Kingdom.
  • Dean WL; JG Brown Cancer Center, University of Louisville, Louisville, Kentucky, 40202, United States of America.
  • Díez AI; Department of Physical Chemistry, University of Murcia, Murcia, 30071, Spain.
  • Ebel C; Univ. Grenoble Alpes, IBS, F-38044, Grenoble, France; CNRS, IBS, F-38044, Grenoble, France; CEA, IBS, F-38044, Grenoble, France.
  • Eckert DM; Protein Interactions Core, Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah, 84112, United States of America.
  • Eisele LE; Wadsworth Center, New York State Department of Health, Albany, New York, 12208, United States of America.
  • Eisenstein E; Institute for Bioscience and Biotechnology Research, Fischell Department of Bioengineering, University of Maryland, Rockville, Maryland, 20850, United States of America.
  • England P; Institut Pasteur, Centre of Biophysics of Macromolecules and Their Interactions, Paris, 75724, France.
  • Escalante C; Department of Physiology and Biophysics, School of Medicine, Virginia Commonwealth University, Richmond, Virginia, 23220, United States of America.
  • Fagan JA; Materials Science and Engineering Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland, 20899, United States of America.
  • Fairman R; Department of Biology, Haverford College, Haverford, Pennsylvania, 19041, United States of America.
  • Finn RM; Laboratory of Chromatin Biochemistry, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany.
  • Fischle W; Laboratory of Chromatin Biochemistry, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany.
  • de la Torre JG; Department of Physical Chemistry, University of Murcia, Murcia, 30071, Spain.
  • Gor J; Department of Structural and Molecular Biology, Darwin Building, University College London, London, WC1E 6BT, United Kingdom.
  • Gustafsson H; Diabetes Biophysics, Novo Nordisk A/S, Måløv, 2760, Denmark.
  • Hall D; Research School of Chemistry, Section on Biological Chemistry, The Australian National University, Acton, ACT 0200, Australia.
  • Harding SE; National Centre for Macromolecular Hydrodynamics, University of Nottingham, School of Biosciences, Sutton Bonington, LE12 5RD, United Kingdom.
  • Cifre JG; Department of Physical Chemistry, University of Murcia, Murcia, 30071, Spain.
  • Herr AB; Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio, 45267, United States of America.
  • Howell EE; Biochemistry, Cell and Molecular Biology Department, University of Tennessee, Knoxville, Tennessee, 37996-0840, United States of America.
  • Isaac RS; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, 94158, United States of America; Tetrad Graduate Program, University of California San Francisco, San Francisco, California, 94158, United States of America.
  • Jao SC; Institute of Biological Chemistry, Academia Sinica, Taipei, 115, Taiwan; Biophysics Core Facility, Scientific Instrument Center, Academia Sinica, Taipei, 115, Taiwan.
  • Jose D; Institute of Molecular Biology and Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon, 97403, United States of America.
  • Kim SJ; Department of Chemistry, Mokpo National University, Muan, 534-729, Korea.
  • Kokona B; Department of Biology, Haverford College, Haverford, Pennsylvania, 19041, United States of America.
  • Kornblatt JA; Enzyme Research Group, Concordia University, Montreal, Quebec, H4B 1R6, Canada.
  • Kosek D; Department of Physical and Macromolecular Chemistry, Faculty of Science, Charles University in Prague, Prague, 12843, Czech Republic.
PLoS One ; 10(5): e0126420, 2015.
Article em En | MEDLINE | ID: mdl-25997164
ABSTRACT
Analytical ultracentrifugation (AUC) is a first principles based method to determine absolute sedimentation coefficients and buoyant molar masses of macromolecules and their complexes, reporting on their size and shape in free solution. The purpose of this multi-laboratory study was to establish the precision and accuracy of basic data dimensions in AUC and validate previously proposed calibration techniques. Three kits of AUC cell assemblies containing radial and temperature calibration tools and a bovine serum albumin (BSA) reference sample were shared among 67 laboratories, generating 129 comprehensive data sets. These allowed for an assessment of many parameters of instrument performance, including accuracy of the reported scan time after the start of centrifugation, the accuracy of the temperature calibration, and the accuracy of the radial magnification. The range of sedimentation coefficients obtained for BSA monomer in different instruments and using different optical systems was from 3.655 S to 4.949 S, with a mean and standard deviation of (4.304 ± 0.188) S (4.4%). After the combined application of correction factors derived from the external calibration references for elapsed time, scan velocity, temperature, and radial magnification, the range of s-values was reduced 7-fold with a mean of 4.325 S and a 6-fold reduced standard deviation of ± 0.030 S (0.7%). In addition, the large data set provided an opportunity to determine the instrument-to-instrument variation of the absolute radial positions reported in the scan files, the precision of photometric or refractometric signal magnitudes, and the precision of the calculated apparent molar mass of BSA monomer and the fraction of BSA dimers. These results highlight the necessity and effectiveness of independent calibration of basic AUC data dimensions for reliable quantitative studies.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Ultracentrifugação Tipo de estudo: Prognostic_studies Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2015 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Ultracentrifugação Tipo de estudo: Prognostic_studies Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2015 Tipo de documento: Article País de afiliação: Estados Unidos