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Whole genome de novo sequencing and genome annotation of the world popular cultivated edible mushroom, Lentinula edodes.
Shim, Donghwan; Park, Sin-Gi; Kim, Kangmin; Bae, Wonsil; Lee, Gir Won; Ha, Byeong-Suk; Ro, Hyeon-Su; Kim, Myungkil; Ryoo, Rhim; Rhee, Sung-Keun; Nou, Ill-Sup; Koo, Chang-Duck; Hong, Chang Pyo; Ryu, Hojin.
Afiliação
  • Shim D; Department of Forest Genetic Resources, National Institute of Forest Science, Suwon 16631, Republic of Korea.
  • Park SG; Theragen Etex Bio Institute, Suwon 16229, Republic of Korea.
  • Kim K; Division of Biotechnology, College of Environmental and Bioresource Sciences, Chonbuk National University, Iksan 54596, Republic of Korea.
  • Bae W; Department of Biology, Chungbuk National University, Cheongju 28644, Republic of Korea.
  • Lee GW; Theragen Etex Bio Institute, Suwon 16229, Republic of Korea.
  • Ha BS; Division of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju 52828, Republic of Korea.
  • Ro HS; Division of Applied Life Science and Research Institute of Life Sciences, Gyeongsang National University, Jinju 52828, Republic of Korea.
  • Kim M; Division of Wood Chemistry & Microbiology, National Institute of Forest Science, Seoul 02455, Republic of Korea.
  • Ryoo R; Division of Wood Chemistry & Microbiology, National Institute of Forest Science, Seoul 02455, Republic of Korea.
  • Rhee SK; Department of Microbiology, Chungbuk National University, Cheongju 28644, Republic of Korea.
  • Nou IS; Department of Horticulture, Sunchon National University, Suncheon, Republic of Korea.
  • Koo CD; Department of Forest Science, Chungbuk National University, Cheongju 28644, Republic of Korea.
  • Hong CP; Theragen Etex Bio Institute, Suwon 16229, Republic of Korea. Electronic address: changpyo.hong@theragenetex.com.
  • Ryu H; Department of Biology, Chungbuk National University, Cheongju 28644, Republic of Korea. Electronic address: hjryu96@gmail.com.
J Biotechnol ; 223: 24-5, 2016 Apr 10.
Article em En | MEDLINE | ID: mdl-26924240
ABSTRACT
Lentinula edodes, the popular shiitake mushroom, is one of the most important cultivated edible mushrooms. It is used as a food and for medicinal purposes. Here, we present the 46.1 Mb draft genome of L. edodes, comprising 13,028 predicted gene models. The genome assembly consists of 31 scaffolds. Gene annotation provides key information about various signaling pathways and secondary metabolites. This genomic information should help establish the molecular genetic markers for MAS/MAB and increase our understanding of the genome structure and function.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genoma Fúngico / Análise de Sequência de DNA / Cogumelos Shiitake Tipo de estudo: Prognostic_studies Idioma: En Revista: J Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2016 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Genoma Fúngico / Análise de Sequência de DNA / Cogumelos Shiitake Tipo de estudo: Prognostic_studies Idioma: En Revista: J Biotechnol Assunto da revista: BIOTECNOLOGIA Ano de publicação: 2016 Tipo de documento: Article