CONDOP: an R package for CONdition-Dependent Operon Predictions.
Bioinformatics
; 32(20): 3199-3200, 2016 10 15.
Article
em En
| MEDLINE
| ID: mdl-27296981
ABSTRACT
The use of high-throughput RNA sequencing to predict dynamic operon structures in prokaryotic genomes has recently gained popularity in bioinformatics. We provide the R implementation of a novel method that uses transcriptomic features extracted from RNA-seq transcriptome profiles to develop ensemble classifiers for condition-dependent operon predictions. The CONDOP package provides a deeper insight into RNA-seq data analysis and allows scientists to highlight the operon organization in the context of transcriptional regulation with a few lines of code. AVAILABILITY AND IMPLEMENTATION CONDOP is implemented in R and is freely available at CRAN. CONTACT vittorio.fortino@helsinki.fiSupplementary information Supplementary data are available at Bioinformatics online.
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Base de dados:
MEDLINE
Assunto principal:
Óperon
/
Software
/
Análise de Sequência de RNA
Tipo de estudo:
Prognostic_studies
/
Risk_factors_studies
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2016
Tipo de documento:
Article
País de afiliação:
Finlândia