MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database.

Leray, Matthieu; Ho, Shian-Lei; Lin, I-Jeng; Machida, Ryuji J

Leray, Matthieu; Ho, Shian-Lei; Lin, I-Jeng; Machida, Ryuji J.

Afiliação

Leray M; Smithsonian Tropical Research Institute, Smithsonian Institution, Panama City, Republic of Panama.
Ho SL; Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan.
Lin IJ; Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan.
Machida RJ; Biodiversity Research Centre, Academia Sinica, Taipei, Taiwan.

Bioinformatics ; 34(21): 3753-3754, 2018 11 01.

Article em En | MEDLINE | ID: mdl-29878054

ABSTRACT

ABSTRACT

Summary:

We present MIDORI server, a user-friendly web platform that uses a curated reference dataset, MIDORI, for high throughput taxonomic classification of unknown metazoan mitochondrial-encoded gene sequences. Currently three methods of taxonomic assignments RDP Classifier, SPINGO and SINTAX, are implemented. Availability and implementation The web server is freely available at {http//reference-midori.info/server.php}.

Assuntos

Computadores; Bases de Dados Genéticas; Genes Mitocondriais; Software; Animais; Biologia Computacional; Bases de Dados Factuais; Internet

Texto completo

Imprimir

XML

PubMed Links

Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Computadores / Bases de Dados Genéticas / Genes Mitocondriais Limite: Animals Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Panamá

Texto completo

Imprimir

XML

PubMed Links

Buscar no Google