OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species.
Nucleic Acids Res
; 47(W1): W52-W58, 2019 07 02.
Article
em En
| MEDLINE
| ID: mdl-31053848
ABSTRACT
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new features that facilitate the comparative analysis of orthologous clusters among up to 12 species. Additionally, this update offers improvements to data visualization and interpretation, including an occurrence pattern table for interrogating the overlap of each orthologous group for the queried species. Within the occurrence table, the functional annotations and summaries of the disjunctions and intersections of clusters between the chosen species can be displayed through an interactive Venn diagram. To facilitate a broader range of comparisons, a larger number of species, including vertebrates, metazoa, protists, fungi, plants and bacteria, have been added in OrthoVenn2. Finally, a stand-alone version is available to perform large dataset comparisons and to visualize results locally without limitation of species number. In summary, OrthoVenn2 is an efficient and user-friendly web server freely accessible at https//orthovenn2.bioinfotoolkits.net.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Software
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Genoma
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Biologia Computacional
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Genômica
Limite:
Animals
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Humans
Idioma:
En
Revista:
Nucleic Acids Res
Ano de publicação:
2019
Tipo de documento:
Article
País de afiliação:
China