G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.
Bioinformatics
; 35(21): 4422-4423, 2019 11 01.
Article
em En
| MEDLINE
| ID: mdl-31070714
ABSTRACT
SUMMARY:
G-OnRamp provides a user-friendly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC Assembly Hubs and JBrowse/Apollo genome browsers with evidence tracks derived from sequence alignments, ab initio gene predictors, RNA-Seq data and repeat finders. G-OnRamp can be used to visualize large genomics datasets and to perform collaborative genome annotation projects in both research and educational settings. AVAILABILITY AND IMPLEMENTATION The virtual machine images and tutorials are available on the G-OnRamp web site (http//g-onramp.org/deployments). The source code is available under an Academic Free License version 3.0 through the goeckslab GitHub repository (https//github.com/goeckslab). SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
Eucariotos
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2019
Tipo de documento:
Article
País de afiliação:
Estados Unidos