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Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases.
Priyam, Anurag; Woodcroft, Ben J; Rai, Vivek; Moghul, Ismail; Munagala, Alekhya; Ter, Filip; Chowdhary, Hiten; Pieniak, Iwo; Maynard, Lawrence J; Gibbins, Mark Anthony; Moon, HongKee; Davis-Richardson, Austin; Uludag, Mahmut; Watson-Haigh, Nathan S; Challis, Richard; Nakamura, Hiroyuki; Favreau, Emeline; Gómez, Esteban A; Pluskal, Tomás; Leonard, Guy; Rumpf, Wolfgang; Wurm, Yannick.
Afiliação
  • Priyam A; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Woodcroft BJ; School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Australia.
  • Rai V; Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, India.
  • Moghul I; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Munagala A; Department of Mathematics, Indian Institute of Technology Kharagpur, Kharagpur, India.
  • Ter F; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Chowdhary H; Department of Mathematics, Indian Institute of Technology Kharagpur, Kharagpur, India.
  • Pieniak I; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Maynard LJ; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Gibbins MA; Department of Computer Science, Royal Holloway University of London, Surrey, United Kingdom.
  • Moon H; Scientific Computing Facility, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
  • Davis-Richardson A; San Francisco, CA.
  • Uludag M; Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia.
  • Watson-Haigh NS; Bioinformatics Hub, School of Biological Sciences, University of Adelaide, Adelaide, Australia.
  • Challis R; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom.
  • Nakamura H; Wellcome Sanger Institute, Wellcome Genome Campus, Cambridge, CB10 1SA.
  • Favreau E; Spiber Inc, Kakuganji Tsuruoka, Yamagata, Japan.
  • Gómez EA; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Pluskal T; School of Biological and Chemical Sciences, Queen Mary University of London, London, United Kingdom.
  • Leonard G; Whitehead Institute for Biomedical Research, Cambridge, MA.
  • Rumpf W; Living Systems Institute, University of Exeter, Exeter, United Kingdom.
  • Wurm Y; The Institute for Genomic Medicine, The Abigail Wexner Research Institute at Nationwide Children's Hospital, Columbus, OH.
Mol Biol Evol ; 36(12): 2922-2924, 2019 12 01.
Article em En | MEDLINE | ID: mdl-31411700
Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Técnicas Genéticas / Biologia Computacional Tipo de estudo: Evaluation_studies Idioma: En Revista: Mol Biol Evol Assunto da revista: BIOLOGIA MOLECULAR Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Reino Unido
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Técnicas Genéticas / Biologia Computacional Tipo de estudo: Evaluation_studies Idioma: En Revista: Mol Biol Evol Assunto da revista: BIOLOGIA MOLECULAR Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Reino Unido