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Pressure control using stochastic cell rescaling.
Bernetti, Mattia; Bussi, Giovanni.
Afiliação
  • Bernetti M; Scuola Internazionale Superiore di Studi Avanzati, Via Bonomea 265, Trieste 34136, Italy.
  • Bussi G; Scuola Internazionale Superiore di Studi Avanzati, Via Bonomea 265, Trieste 34136, Italy.
J Chem Phys ; 153(11): 114107, 2020 Sep 21.
Article em En | MEDLINE | ID: mdl-32962386
ABSTRACT
Molecular dynamics simulations require barostats to be performed at a constant pressure. The usual recipe is to employ the Berendsen barostat first, which displays a first-order volume relaxation efficient in equilibration but results in incorrect volume fluctuations, followed by a second-order or a Monte Carlo barostat for production runs. In this paper, we introduce stochastic cell rescaling, a first-order barostat that samples the correct volume fluctuations by including a suitable noise term. The algorithm is shown to report volume fluctuations compatible with the isobaric ensemble and its anisotropic variant is tested on a membrane simulation. Stochastic cell rescaling can be straightforwardly implemented in the existing codes and can be used effectively in both equilibration and production phases.
Assuntos

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Modelos Químicos Tipo de estudo: Health_economic_evaluation Idioma: En Revista: J Chem Phys Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Itália

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Modelos Químicos Tipo de estudo: Health_economic_evaluation Idioma: En Revista: J Chem Phys Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Itália