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Statistical image processing quantifies the changes in cytoplasmic texture associated with aging in Caenorhabditis elegans oocytes.
Imakubo, Momoko; Takayama, Jun; Okada, Hatsumi; Onami, Shuichi.
Afiliação
  • Imakubo M; Department of Computational Science, Graduate School of System Informatics, Kobe University, Kobe, Hyogo, 657-8501, Japan.
  • Takayama J; Laboratory for Developmental Dynamics, RIKEN Center for Biosystems Dynamics Research, Kobe, Hyogo, 650-0047, Japan.
  • Okada H; Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo, 650-0047, Japan.
  • Onami S; Laboratory for Developmental Dynamics, RIKEN Quantitative Biology Center, Kobe, Hyogo, 650-0047, Japan.
BMC Bioinformatics ; 22(1): 73, 2021 Feb 17.
Article em En | MEDLINE | ID: mdl-33596821
BACKGROUND: Oocyte quality decreases with aging, thereby increasing errors in fertilization, chromosome segregation, and embryonic cleavage. Oocyte appearance also changes with aging, suggesting a functional relationship between oocyte quality and appearance. However, no methods are available to objectively quantify age-associated changes in oocyte appearance. RESULTS: We show that statistical image processing of Nomarski differential interference contrast microscopy images can be used to quantify age-associated changes in oocyte appearance in the nematode Caenorhabditis elegans. Max-min value (mean difference between the maximum and minimum intensities within each moving window) quantitatively characterized the difference in oocyte cytoplasmic texture between 1- and 3-day-old adults (Day 1 and Day 3 oocytes, respectively). With an appropriate parameter set, the gray level co-occurrence matrix (GLCM)-based texture feature Correlation (COR) more sensitively characterized this difference than the Max-min Value. Manipulating the smoothness of and/or adding irregular structures to the cytoplasmic texture of Day 1 oocyte images reproduced the difference in Max-min Value but not in COR between Day 1 and Day 3 oocytes. Increasing the size of granules in synthetic images recapitulated the age-associated changes in COR. Manual measurements validated that the cytoplasmic granules in oocytes become larger with aging. CONCLUSIONS: The Max-min value and COR objectively quantify age-related changes in C. elegans oocyte in Nomarski DIC microscopy images. Our methods provide new opportunities for understanding the mechanism underlying oocyte aging.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Caenorhabditis elegans Tipo de estudo: Risk_factors_studies Limite: Animals Idioma: En Revista: BMC Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Japão

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Caenorhabditis elegans Tipo de estudo: Risk_factors_studies Limite: Animals Idioma: En Revista: BMC Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Japão