StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs.

Pratt, Alyssa A; Torrance, Ellis L; Kasun, George W; Stedman, Kenneth M; de la Higuera, Ignacio

Pratt, Alyssa A; Torrance, Ellis L; Kasun, George W; Stedman, Kenneth M; de la Higuera, Ignacio.

Afiliação

Pratt AA; Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
Torrance EL; Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon, USA.
Kasun GW; Department of Computer Science, Oregon State University, Corvallis, Oregon, USA.
Stedman KM; Department of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
de la Higuera I; Department of Biology, University of North Carolina Greensboro, Greensboro, North Carolina, USA.

Microbiol Resour Announc ; 10(26): e0042421, 2021 Jul.

Article em En | MEDLINE | ID: mdl-34197205

ABSTRACT

ABSTRACT

Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of replication in circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses.

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Texto completo: 1 Base de dados: MEDLINE Tipo de estudo: Diagnostic_studies Idioma: En Revista: Microbiol Resour Announc Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos

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