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A molecular-based identification resource for the arthropods of Finland.
Roslin, Tomas; Somervuo, Panu; Pentinsaari, Mikko; Hebert, Paul D N; Agda, Jireh; Ahlroth, Petri; Anttonen, Perttu; Aspi, Jouni; Blagoev, Gergin; Blanco, Santiago; Chan, Dean; Clayhills, Tom; deWaard, Jeremy; deWaard, Stephanie; Elliot, Tyler; Elo, Riikka; Haapala, Sami; Helve, Eero; Ilmonen, Jari; Hirvonen, Petri; Ho, Chris; Itämies, Juhani; Ivanov, Vladislav; Jakovlev, Jevgeni; Juslén, Aino; Jussila, Reijo; Kahanpää, Jere; Kaila, Lauri; Kakko, Ari; Kakko, Iiro; Karhu, Ali; Karjalainen, Sami; Kjaerandsen, Jostein; Koskinen, Janne; Laasonen, Erkki M; Laasonen, Leena; Laine, Erkka; Lampila, Petri; Levesque-Beaudin, Valerie; Lu, Liuqiong; Lähteenaro, Meri; Majuri, Pekka; Malmberg, Sampsa; Manjunath, Ramya; Martikainen, Petri; Mattila, Jaakko; McKeown, Jaclyn; Metsälä, Petri; Miklasevskaja, Margarita; Miller, Meredith.
Afiliação
  • Roslin T; Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
  • Somervuo P; Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland.
  • Pentinsaari M; Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland.
  • Hebert PDN; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Agda J; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Ahlroth P; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Anttonen P; Finnish Environment Institute (SYKE), Helsinki, Finland.
  • Aspi J; Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle, Germany.
  • Blagoev G; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
  • Blanco S; Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland.
  • Chan D; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Clayhills T; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • deWaard J; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • deWaard S; Parainen, Finland.
  • Elliot T; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Elo R; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Haapala S; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Helve E; Zoological Museum, Biodiversity Unit, University of Turku, Turku, Finland.
  • Ilmonen J; Zoology Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.
  • Hirvonen P; Oulu, Finland.
  • Ho C; Espoo, Finland.
  • Itämies J; Metsähallitus, Parks & Wildlife Finland, Vantaa, Finland.
  • Ivanov V; Porvoo, Finland.
  • Jakovlev J; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Juslén A; Oulu, Finland.
  • Jussila R; Ecology and Genetics Research Unit, University of Oulu, Oulu, Finland.
  • Kahanpää J; Vantaa, Finland.
  • Kaila L; Finnish Museum of Natural History 'Luomus', University of Helsinki, Helsinki, Finland.
  • Jari-PekkaKaitila; Paattinen, Finland.
  • Kakko A; Zoology Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.
  • Kakko I; Zoology Unit, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland.
  • Karhu A; Kerava, Finland.
  • Karjalainen S; Oulu, Finland.
  • Kjaerandsen J; Forssa Museum of Natural History, Forssa, Finland.
  • Koskinen J; Viinijärvi, Finland.
  • Laasonen EM; Kirkkonummi, Finland.
  • Laasonen L; The Arctic University Museum of Norway, UiT -The Arctic University of Norway, Langnes, Tromsø, Norway.
  • Laine E; Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland.
  • Lampila P; Department of Environmental and Biological Sciences, University of Eastern Finland, Joensuu, Finland.
  • Levesque-Beaudin V; Helsinki, Finland.
  • Lu L; Helsinki, Finland.
  • Lähteenaro M; Jyväskylä, Finland.
  • Majuri P; Helsinki, Finland.
  • Malmberg S; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Manjunath R; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
  • Martikainen P; Division of Systematics, Department of Zoology, Stockholm University, Stockholm, Sweden.
  • Mattila J; Department of Entomology, Swedish Museum of Natural History, Stockholm, Sweden.
  • McKeown J; Liminka, Finland.
  • Metsälä P; Espoo, Finland.
  • Miklasevskaja M; Centre for Biodiversity Genomics, University of Guelph, Guelph, ON, Canada.
Mol Ecol Resour ; 22(2): 803-822, 2022 Feb.
Article em En | MEDLINE | ID: mdl-34562055
ABSTRACT
To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the improvement in identification accuracy enabled by the current reference library, we ran 1000 Finnish insect and spider species through the Barcode of Life Data system (BOLD) identification engine. Of these, 91% were correctly assigned to a unique species when compared to the new reference library alone, 85% were correctly identified when compared to BOLD with the new material included, and 75% with the new material excluded. To capitalize on this resource, we used the new reference material to train a probabilistic taxonomic assignment tool, FinPROTAX, scoring high success. For the full-length barcode region, the accuracy of taxonomic assignments at the level of classes, orders, families, subfamilies, tribes, genera, and species reached 99.9%, 99.9%, 99.8%, 99.7%, 99.4%, 96.8%, and 88.5%, respectively. The FinBOL arthropod reference library and FinPROTAX are available through the Finnish Biodiversity Information Facility (www.laji.fi) at https//laji.fi/en/theme/protax. Overall, the FinBOL investment represents a massive capacity-transfer from the taxonomic community of Finland to all sectors of society.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Artrópodes Tipo de estudo: Diagnostic_studies / Prognostic_studies Limite: Animals País/Região como assunto: Europa Idioma: En Revista: Mol Ecol Resour Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Suécia

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Artrópodes Tipo de estudo: Diagnostic_studies / Prognostic_studies Limite: Animals País/Região como assunto: Europa Idioma: En Revista: Mol Ecol Resour Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Suécia