PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes.
Bioinformatics
; 38(18): 4412-4414, 2022 09 15.
Article
em En
| MEDLINE
| ID: mdl-35916725
ABSTRACT
MOTIVATION As pan-genome approaches are largely employed for bacterial comparative genomics and evolution analyses, but still difficult to be carried out by non-bioinformatician biologists, there is a need for an innovative tool facilitating the exploration of bacterial pan-genomes. RESULTS:
PanExplorer is a web application providing various genomic analyses and reports, giving intuitive views that enable a better understanding of bacterial pan-genomes. As an example, we produced the pan-genome for 121 Anaplasmataceae strains (including 30 Ehrlichia, 15 Anaplasma, 68 Wolbachia). AVAILABILITY AND IMPLEMENTATION PanExplorer is written in Perl CGI and relies on several JavaScript libraries for visualization (hotmap.js, MauveViewer, CircosJS). It is freely available at http//panexplorer.southgreen.fr. The source code has been released in a GitHub repository https//github.com/SouthGreenPlatform/PanExplorer. A documentation section is available on PanExplorer website.
Texto completo:
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Base de dados:
MEDLINE
Assunto principal:
Genoma Bacteriano
/
Bibliotecas
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2022
Tipo de documento:
Article
País de afiliação:
França