Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.

Cheng, Trinity; Chin, Pei-Ju; Cha, Kenny; Petrick, Nicholas; Mikailov, Mike

Cheng, Trinity; Chin, Pei-Ju; Cha, Kenny; Petrick, Nicholas; Mikailov, Mike.

Afiliação

Cheng T; Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, MD, 20993, USA.
Chin PJ; Department of Biomedical Engineering, Whiting School of Engineering, Johns Hopkins University, Baltimore, MD, 21218, USA.
Cha K; Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, MD, 20993, USA.
Petrick N; Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, MD, 20993, USA.
Mikailov M; Center for Devices and Radiological Health, U.S. Food and Drug Administration, Silver Spring, MD, 20993, USA.

BMC Bioinformatics ; 23(1): 544, 2022 Dec 16.

Article em En | MEDLINE | ID: mdl-36526957

Assuntos

Metodologias Computacionais; Software; Algoritmos; Biologia Computacional/métodos; Alinhamento de Sequência

Palavras-chave

BLAST; High performance computing (HPC); Load balancing; Parallelization; Performance model; Profiling

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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Software / Metodologias Computacionais Tipo de estudo: Prognostic_studies / Qualitative_research Idioma: En Revista: BMC Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos

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