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COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities.
Wannigama, Dhammika Leshan; Amarasiri, Mohan; Hongsing, Parichart; Hurst, Cameron; Modchang, Charin; Chadsuthi, Sudarat; Anupong, Suparinthon; Phattharapornjaroen, Phatthranit; Rad S M, Ali Hosseini; Fernandez, Stefan; Huang, Angkana T; Vatanaprasan, Porames; Jay, Dylan John; Saethang, Thammakorn; Luk-In, Sirirat; Storer, Robin James; Ounjai, Puey; Devanga Ragupathi, Naveen Kumar; Kanthawee, Phitsanuruk; Sano, Daisuke; Furukawa, Takashi; Sei, Kazunari; Leelahavanichkul, Asada; Kanjanabuch, Talerngsak; Hirankarn, Nattiya; Higgins, Paul G; Kicic, Anthony; Singer, Andrew C; Chatsuwan, Tanittha; Trowsdale, Sam; Abe, Shuichi; McLellan, Alexander D; Ishikawa, Hitoshi.
Afiliação
  • Wannigama DL; Department of Infectious Diseases and Infection Control, Yamagata Prefectural Central Hospital, Yamagata, Japan.
  • Amarasiri M; Department of Microbiology, Faculty of Medicine, Chulalongkorn University, King Chulalongkorn Memorial Hospital, Thai Red Cross Society, Bangkok, Thailand.
  • Hongsing P; Center of Excellence in Antimicrobial Resistance and Stewardship, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
  • Hurst C; School of Medicine, Faculty of Health and Medical Sciences, The University of Western Australia, Nedlands, WA, Australia.
  • Modchang C; Biofilms and Antimicrobial Resistance Consortium of ODA receiving countries, The University of Sheffield, Sheffield, UK.
  • Chadsuthi S; Pathogen Hunter's Research Collaborative Team, Department of Infectious Diseases and Infection Control, Yamagata Prefectural Central Hospital, Yamagata, Japan.
  • Anupong S; Laboratory of Environmental Hygiene, Department of Health Science, School of Allied Health Sciences, Graduate School of Medical Sciences, Kitasato University, Kitasato, Sagamihara-Minami, Kanagawa 252-0373, Japan.
  • Phattharapornjaroen P; Mae Fah Luang University Hospital, Chiang Rai, Thailand.
  • Rad S M AH; School of Integrative Medicine, Mae Fah Luang University, Chiang Rai, Thailand.
  • Fernandez S; Molly Wardaguga Research Centre, Charles Darwin University, Brisbane, QLD, Australia.
  • Huang AT; Statistics, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.
  • Vatanaprasan P; Biophysics Group, Department of Physics, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
  • Jay DJ; Centre of Excellence in Mathematics, MHESI, Bangkok 10400, Thailand.
  • Saethang T; Thailand Center of Excellence in Physics, Ministry of Higher Education, Science, Research and Innovation, 328 Si Ayutthaya Road, Bangkok 10400, Thailand.
  • Luk-In S; Department of Physics, Faculty of Science, Naresuan University, Phitsanulok 65000, Thailand.
  • Storer RJ; Biophysics Group, Department of Physics, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.
  • Ounjai P; Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
  • Devanga Ragupathi NK; Institute of Clinical Sciences, Department of Surgery, Sahlgrenska Academy, Gothenburg University, 40530 Gothenburg, Sweden.
  • Kanthawee P; Department of Microbiology and Immunology, University of Otago, Dunedin, Otago 9010, New Zealand.
  • Sano D; Center of Excellence in Immunology and Immune-Mediated Diseases, Chulalongkorn University, Bangkok 10330, Thailand.
  • Furukawa T; Department of Virology, U.S. Army Medical Directorate, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
  • Sei K; Department of Virology, U.S. Army Medical Directorate, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
  • Leelahavanichkul A; Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
  • Kanjanabuch T; Pathogen Hunter's Research Collaborative Team, Department of Infectious Diseases and Infection Control, Yamagata Prefectural Central Hospital, Yamagata, Japan.
  • Hirankarn N; Department of Computer Science, Faculty of Science, Kasetsart University, Bangkok, Thailand.
  • Higgins PG; Department of Clinical Microbiology and Applied Technology, Faculty of Medical Technology, Mahidol University, Bangkok, Thailand.
  • Kicic A; Office of Research Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.
  • Singer AC; Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand.
  • Chatsuwan T; School of Medicine, Faculty of Health and Medical Sciences, The University of Western Australia, Nedlands, WA, Australia.
  • Trowsdale S; Department of Chemical and Biological Engineering, The University of Sheffield, Sheffield, UK.
  • Abe S; Department of Clinical Microbiology, Christian Medical College, Vellore, India.
  • McLellan AD; Public Health major, School of Health Science, Mae Fah Luang University, Chiang Rai, Thailand.
  • Ishikawa H; Department of Frontier Sciences for Advanced Environment, Graduate School of Environmental Studies, Tohoku University, Sendai, Miyagi, Japan.
iScience ; 26(7): 107019, 2023 Jul 21.
Article em En | MEDLINE | ID: mdl-37351501
ABSTRACT
Equitable SARS-CoV-2 surveillance in low-resource communities lacking centralized sewers is critical as wastewater-based epidemiology (WBE) progresses. However, large-scale studies on SARS-CoV-2 detection in wastewater from low-and middle-income countries is limited because of economic and technical reasons. In this study, wastewater samples were collected twice a month from 186 urban and rural subdistricts in nine provinces of Thailand mostly having decentralized and non-sewered sanitation infrastructure and analyzed for SARS-CoV-2 RNA variants using allele-specific RT-qPCR. Wastewater SARS-CoV-2 RNA concentration was used to estimate the real-time incidence and time-varying effective reproduction number (Re). Results showed an increase in SARS-CoV-2 RNA concentrations in wastewater from urban and rural areas 14-20 days earlier than infected individuals were officially reported. It also showed that community/food markets were "hot spots" for infected people. This approach offers an opportunity for early detection of transmission surges, allowing preparedness and potentially mitigating significant outbreaks at both spatial and temporal scales.
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Texto completo: 1 Base de dados: MEDLINE Tipo de estudo: Screening_studies Idioma: En Revista: IScience Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Japão
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Base de dados: MEDLINE Tipo de estudo: Screening_studies Idioma: En Revista: IScience Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Japão