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Direct metagenomic and amplicon-based Nanopore sequencing of French human monkeypox from clinical specimen.
Kwasiborski, Aurelia; Hourdel, Véronique; Balière, Charlotte; Hoinard, Damien; Grassin, Quentin; Feher, Maxence; De La Porte Des Vaux, Clémentine; Cresta, Mélanie; Vanhomwegen, Jessica; Manuguerra, Jean-Claude; Batéjat, Christophe; Caro, Valérie.
Afiliação
  • Kwasiborski A; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Hourdel V; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Balière C; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Hoinard D; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Grassin Q; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Feher M; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • De La Porte Des Vaux C; Bichat-Claude Bernard Hospital , Paris, France.
  • Cresta M; Bichat-Claude Bernard Hospital , Paris, France.
  • Vanhomwegen J; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Manuguerra J-C; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Batéjat C; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
  • Caro V; Institut Pasteur, Université Paris Cité, Environment and Infectious Risks Unit, Laboratory for Urgent Response to Biological Threats , Paris, France.
Microbiol Resour Announc ; 13(1): e0081123, 2024 Jan 17.
Article em En | MEDLINE | ID: mdl-38047654
ABSTRACT
We report the whole-genome sequence of monkeypox virus obtained using MinION technology (Oxford Nanopore Technologies) from a French clinical specimen during the 2022 epidemic. Amplicon-based sequencing and shotgun metagenomic approaches were directly applied to the sample.
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Texto completo: 1 Base de dados: MEDLINE Idioma: En Revista: Microbiol Resour Announc Ano de publicação: 2024 Tipo de documento: Article País de afiliação: França

Texto completo: 1 Base de dados: MEDLINE Idioma: En Revista: Microbiol Resour Announc Ano de publicação: 2024 Tipo de documento: Article País de afiliação: França