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Innovative Multistage ML-QSAR Models for Malaria: From Data to Discovery.
Borba, Joyce V B; Salazar-Alvarez, Luis Carlos; Ferreira, Letícia Tiburcio; Silva-Mendonça, Sabrina; Silva, Meryck Felipe Brito da; Sanches, Igor H; Clementino, Leandro da Costa; Magalhães, Marcela Lucas; Rimoldi, Aline; Calit, Juliana; Santana, Sofia; Prudêncio, Miguel; Cravo, Pedro V; Bargieri, Daniel Y; Cassiano, Gustavo C; Costa, Fabio T M; Andrade, Carolina Horta.
Afiliação
  • Borba JVB; Laboratory of Tropical Diseases - Prof. Dr. Luiz Jacintho da Silva, Department of Genetics Evolution, Microbiology and Immunology. Institute of Biology, UNICAMP, 13083-970 Campinas, São Paulo Brazil.
  • Salazar-Alvarez LC; Laboratory for Molecular Modeling and Drug Design (LabMol), Faculty of Pharmacy, Federal University of Goias, Rua 240, qd. 87, Goiânia, Goiás 74605-170, Brazil.
  • Ferreira LT; Center for Excellence in Artificial Intelligence (CEIA), Institute of Informatics, Universidade Federal de Goiás, Goiânia, 74605-170, Goiás Brazil.
  • Silva-Mendonça S; Center for the Research and Advancement in Fragments and Molecular Targets (CRAFT), School of Pharmaceutical Sciences at Ribeirao Preto, University of São Paulo, Ribeirão Preto, São Paulo 14040-903, Brazil.
  • Silva MFBD; Laboratory of Tropical Diseases - Prof. Dr. Luiz Jacintho da Silva, Department of Genetics Evolution, Microbiology and Immunology. Institute of Biology, UNICAMP, 13083-970 Campinas, São Paulo Brazil.
  • Sanches IH; Laboratory of Tropical Diseases - Prof. Dr. Luiz Jacintho da Silva, Department of Genetics Evolution, Microbiology and Immunology. Institute of Biology, UNICAMP, 13083-970 Campinas, São Paulo Brazil.
  • Clementino LDC; Laboratory for Molecular Modeling and Drug Design (LabMol), Faculty of Pharmacy, Federal University of Goias, Rua 240, qd. 87, Goiânia, Goiás 74605-170, Brazil.
  • Magalhães ML; Center for Excellence in Artificial Intelligence (CEIA), Institute of Informatics, Universidade Federal de Goiás, Goiânia, 74605-170, Goiás Brazil.
  • Rimoldi A; Center for the Research and Advancement in Fragments and Molecular Targets (CRAFT), School of Pharmaceutical Sciences at Ribeirao Preto, University of São Paulo, Ribeirão Preto, São Paulo 14040-903, Brazil.
  • Calit J; Laboratory for Molecular Modeling and Drug Design (LabMol), Faculty of Pharmacy, Federal University of Goias, Rua 240, qd. 87, Goiânia, Goiás 74605-170, Brazil.
  • Santana S; Center for Excellence in Artificial Intelligence (CEIA), Institute of Informatics, Universidade Federal de Goiás, Goiânia, 74605-170, Goiás Brazil.
  • Prudêncio M; Center for the Research and Advancement in Fragments and Molecular Targets (CRAFT), School of Pharmaceutical Sciences at Ribeirao Preto, University of São Paulo, Ribeirão Preto, São Paulo 14040-903, Brazil.
  • Cravo PV; Laboratory for Molecular Modeling and Drug Design (LabMol), Faculty of Pharmacy, Federal University of Goias, Rua 240, qd. 87, Goiânia, Goiás 74605-170, Brazil.
  • Bargieri DY; Center for Excellence in Artificial Intelligence (CEIA), Institute of Informatics, Universidade Federal de Goiás, Goiânia, 74605-170, Goiás Brazil.
  • Cassiano GC; Center for the Research and Advancement in Fragments and Molecular Targets (CRAFT), School of Pharmaceutical Sciences at Ribeirao Preto, University of São Paulo, Ribeirão Preto, São Paulo 14040-903, Brazil.
  • Costa FTM; Laboratory of Tropical Diseases - Prof. Dr. Luiz Jacintho da Silva, Department of Genetics Evolution, Microbiology and Immunology. Institute of Biology, UNICAMP, 13083-970 Campinas, São Paulo Brazil.
  • Andrade CH; Laboratory of Tropical Diseases - Prof. Dr. Luiz Jacintho da Silva, Department of Genetics Evolution, Microbiology and Immunology. Institute of Biology, UNICAMP, 13083-970 Campinas, São Paulo Brazil.
ACS Med Chem Lett ; 15(8): 1386-1395, 2024 Aug 08.
Article em En | MEDLINE | ID: mdl-39140064
ABSTRACT
Malaria presents a significant challenge to global public health, with around 247 million cases estimated to occur annually worldwide. The growing resistance of Plasmodium parasites to existing therapies underscores the urgent need for new and innovative antimalarial drugs. This study leveraged artificial intelligence (AI) to tackle this complex challenge. We developed multistage Machine Learning Quantitative Structure-Activity Relationship (ML-QSAR) models to effectively analyze large datasets and predict the efficacy of chemical compounds against multiple life cycle stages of Plasmodium parasites. We then selected 16 compounds for experimental evaluation, six of which showed at least dual-stage inhibitory activity and one inhibited all life cycle stages tested. Moreover, explainable AI (XAI) analysis provided insights into critical molecular features influencing model predictions, thereby enhancing our understanding of compound interactions. This study not only empowers the development of advanced predictive AI models but also accelerates the identification and optimization of potential antiplasmodial compounds.

Texto completo: 1 Base de dados: MEDLINE Idioma: En Revista: ACS Med Chem Lett Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Idioma: En Revista: ACS Med Chem Lett Ano de publicação: 2024 Tipo de documento: Article