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1.
Mol Ecol ; 25(2): 598-615, 2016 01.
Artigo em Inglês | MEDLINE | ID: mdl-26614983

RESUMO

Venoms comprise of complex mixtures of peptides evolved for predation and defensive purposes. Remarkably, some carnivorous cone snails can inject two distinct venoms in response to predatory or defensive stimuli, providing a unique opportunity to study separately how different ecological pressures contribute to toxin diversification. Here, we report the extraordinary defensive strategy of the Rhizoconus subgenus of cone snails. The defensive venom from this worm-hunting subgenus is unusually simple, almost exclusively composed of αD-conotoxins instead of the ubiquitous αA-conotoxins found in the more complex defensive venom of mollusc- and fish-hunting cone snails. A similarly compartmentalized venom gland as those observed in the other dietary groups facilitates the deployment of this defensive venom. Transcriptomic analysis of a Conus vexillum venom gland revealed the αD-conotoxins as the major transcripts, with lower amounts of 15 known and four new conotoxin superfamilies also detected with likely roles in prey capture. Our phylogenetic and molecular evolution analysis of the αD-conotoxins from five subgenera of cone snails suggests they evolved episodically as part of a defensive strategy in the Rhizoconus subgenus. Thus, our results demonstrate an important role for defence in the evolution of conotoxins.


Assuntos
Conotoxinas/química , Caramujo Conus/genética , Evolução Molecular , Filogenia , Transcriptoma , Sequência de Aminoácidos , Animais , Austrália , Linhagem Celular , Conotoxinas/genética , Humanos , Dados de Sequência Molecular , Análise de Sequência de RNA , Espectrometria de Massas em Tandem
2.
Cell Mol Life Sci ; 72(10): 1939-58, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25693678

RESUMO

Venom as a form of chemical prey capture is a key innovation that has underpinned the explosive radiation of the advanced snakes (Caenophidia). Small venom proteins are often rich in disulfide bonds thus facilitating stable molecular scaffolds that present key functional residues on the protein surface. New toxin types are initially developed through the venom gland over-expression of normal body proteins, their subsequent gene duplication and diversification that leads to neofunctionalisation as random mutations modify their structure and function. This process has led to preferentially selected (privileged) cysteine-rich scaffolds that enable the snake to build arrays of toxins many of which may lead to therapeutic products and research tools. This review focuses on cysteine-rich small proteins and peptides found in snake venoms spanning natriuretic peptides to phospholipase enzymes, while highlighting their three-dimensional structures and biological functions as well as their potential as therapeutic agents or research tools.


Assuntos
Evolução Molecular , Modelos Moleculares , Peptídeos Natriuréticos/genética , Venenos de Serpentes/química , Venenos de Serpentes/genética , Sequência de Aminoácidos , Citotoxinas/genética , Citotoxinas/metabolismo , Desintegrinas/genética , Desintegrinas/metabolismo , Endotelinas/genética , Endotelinas/metabolismo , Duplicação Gênica/genética , Dados de Sequência Molecular , Peptídeos Natriuréticos/metabolismo , Fosfolipases A2/genética , Fosfolipases A2/metabolismo , Alinhamento de Sequência , beta-Defensinas/genética , beta-Defensinas/metabolismo
3.
Biopolymers ; 101(4): 347-54, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23913763

RESUMO

Voltage-gated sodium (Nav) channels are responsible for generation and propagation of action potentials throughout the nervous system. Their malfunction causes several disorders and chronic conditions including neuropathic pain. Potent subtype specific ligands are essential for deciphering the molecular mechanisms of Nav channel function and development of effective therapeutics. µ-Conotoxin SIIIA is a potent mammalian Nav 1.2 channel blocker that exhibits analgesic activity in rodents. We undertook to reengineer loop 1 through a strategy involving charge alterations and truncations which led to the development of µ-SIIIA mimetics with novel selectivity profiles. A novel [N5K/D15A]SIIIA(3-20) mutant with enhanced net positive charge showed a dramatic increase in its Nav 1.2 potency (IC50 of 0.5 nM vs. 9.6 nM for native SIIIA) though further truncations led to loss of potency. Unexpectedly, it appears that SIIIA loop 1 significantly influences its Nav channel interactions despite loop 2 and 3 residues constituting the pharmacophore. This minimal functional conotoxin scaffold may allow further development of selective NaV blockers.


Assuntos
Conotoxinas/química , Engenharia de Proteínas , Alicerces Teciduais/química , Sequência de Aminoácidos , Animais , Cromatografia Líquida de Alta Pressão , Cromatografia de Fase Reversa , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Proteínas Mutantes/química , Canal de Sódio Disparado por Voltagem NAV1.2/metabolismo , Dobramento de Proteína , Estrutura Secundária de Proteína , Ratos Wistar
4.
Mol Pharmacol ; 77(2): 139-48, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19892914

RESUMO

Neuronal (N)-type Ca(2+) channel-selective omega-conotoxins have emerged as potential new drugs for the treatment of chronic pain. In this study, two new omega-conotoxins, CVIE and CVIF, were discovered from a Conus catus cDNA library. Both conopeptides potently displaced (125)I-GVIA binding to rat brain membranes. In Xenopus laevis oocytes, CVIE and CVIF potently and selectively inhibited depolarization-activated Ba(2+) currents through recombinant N-type (alpha1(B-b)/alpha(2)delta1/beta(3)) Ca(2+) channels. Recovery from block increased with membrane hyperpolarization, indicating that CVIE and CVIF have a higher affinity for channels in the inactivated state. The link between inactivation and the reversibility of omega-conotoxin action was investigated by creating molecular diversity in beta subunits: N-type channels with beta(2a) subunits almost completely recovered from CVIE or CVIF block, whereas those with beta(3) subunits exhibited weak recovery, suggesting that reversibility of the omega-conotoxin block may depend on the type of beta-subunit isoform. In rat dorsal root ganglion sensory neurons, neither peptide had an effect on low-voltage-activated T-type channels but potently and selectively inhibited high voltage-activated N-type Ca(2+) channels in a voltage-dependent manner. In rat spinal cord slices, both peptides reversibly inhibited excitatory monosynaptic transmission between primary afferents and dorsal horn superficial lamina neurons. Homology models of CVIE and CVIF suggest that omega-conotoxin/voltage-gated Ca(2+) channel interaction is dominated by ionic/electrostatic interactions. In the rat partial sciatic nerve ligation model of neuropathic pain, CVIE and CVIF (1 nM) significantly reduced allodynic behavior. These N-type Ca(2+) channel-selective omega-conotoxins are therefore useful as neurophysiological tools and as potential therapeutic agents to inhibit nociceptive pain pathways.


Assuntos
Analgésicos não Narcóticos/farmacologia , Bloqueadores dos Canais de Cálcio/farmacologia , Canais de Cálcio Tipo N/metabolismo , Proteínas Recombinantes/antagonistas & inibidores , ômega-Conotoxinas/farmacologia , Sequência de Aminoácidos , Analgésicos não Narcóticos/química , Analgésicos não Narcóticos/isolamento & purificação , Animais , Bloqueadores dos Canais de Cálcio/química , Bloqueadores dos Canais de Cálcio/isolamento & purificação , Canais de Cálcio Tipo N/fisiologia , Células Cultivadas , Caramujo Conus , Relação Dose-Resposta a Droga , Feminino , Gânglios Espinais/efeitos dos fármacos , Gânglios Espinais/fisiologia , Masculino , Dados de Sequência Molecular , Técnicas de Patch-Clamp , Estrutura Terciária de Proteína , Coelhos , Ratos , Ratos Sprague-Dawley , Ratos Wistar , Proteínas Recombinantes/genética , Xenopus laevis , ômega-Conotoxinas/química , ômega-Conotoxinas/isolamento & purificação
5.
Nat Neurosci ; 4(9): 902-7, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11528421

RESUMO

Cone snails use venom containing a cocktail of peptides ('conopeptides') to capture their prey. Many of these peptides also target mammalian receptors, often with exquisite selectivity. Here we report the discovery of two new classes of conopeptides. One class targets alpha1-adrenoceptors (rho-TIA from the fish-hunting Conus tulipa), and the second class targets the neuronal noradrenaline transporter (chi-MrIA and chi-MrIB from the mollusk-hunting C. marmoreus). rho-TIA and chi-MrIA selectively modulate these important membrane-bound proteins. Both peptides act as reversible non-competitive inhibitors and provide alternative avenues for the identification of inhibitor drugs.


Assuntos
Proteínas de Transporte/antagonistas & inibidores , Venenos de Moluscos/classificação , Venenos de Moluscos/farmacologia , Receptores Adrenérgicos alfa/efeitos dos fármacos , Simportadores , Sequência de Aminoácidos/genética , Animais , Imageamento Tridimensional , Espectroscopia de Ressonância Magnética , Masculino , Dados de Sequência Molecular , Venenos de Moluscos/química , Venenos de Moluscos/genética , Neurônios/metabolismo , Proteínas da Membrana Plasmática de Transporte de Norepinefrina , Ratos , Ratos Wistar
6.
Toxicon ; 47(1): 1-20, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16364387

RESUMO

The saliva of ticks (Suborder Ixodida) is critical to their survival as parasites. A tick bite should result in strong responses from the host defence systems (haemostatic, immune and inflammatory) but tick saliva appears to have evolved to counter these responses. We review current knowledge of tick saliva components, with emphasis on those molecules confirmed to be present in the secreted saliva but including some that have only been confirmed to be present in salivary glands. About 50 tick saliva proteins that are well described in the literature are discussed. These saliva components include enzymes, enzyme inhibitors, amine-binding proteins and cytokine homologues that act as anti-haemostatic, anti-inflammatory or immuno-modulatory agents. Sequence comparisons are illustrated. The importance of tick saliva and the significance of the findings to date are also discussed.


Assuntos
Ixodidae/química , Saliva/química , Proteínas e Peptídeos Salivares/análise , Animais , Sítios de Ligação , Enzimas/metabolismo , Humanos , Ixodidae/parasitologia , Dados de Sequência Molecular , Saliva/parasitologia , Homologia de Sequência de Aminoácidos
7.
Structure ; 5(4): 571-83, 1997 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-9115446

RESUMO

BACKGROUND: The venoms of Conus snails contain small, disulfide-rich inhibitors of voltage-dependent sodium channels. Conotoxin GS is a 34-residue polypeptide isolated from Conus geographus that interacts with the extracellular entrance of skeletal muscle sodium channels to prevent sodium ion conduction. Although conotoxin GS binds competitively with mu conotoxin GIIIA to the sodium channel surface, the two toxin types have little sequence identity with one another, and conotoxin GS has a four-loop structural framework rather than the characteristic three-loop mu-conotoxin framework. The structural study of conotoxin GS will form the basis for establishing a structure-activity relationship and understanding its interaction with the pore region of sodium channels. RESULTS: The three-dimensional structure of conotoxin GS was determined using two-dimensional NMR spectroscopy. The protein exhibits a compact fold incorporating a beta hairpin and several turns. An unusual feature of conotoxin GS is the exceptionally high proportion (100%) of cis-imide bond geometry for the three proline or hydroxyproline residues. The structure of conotoxin GS bears little resemblance to the three-loop mu conotoxins, consistent with the low sequence identity between the two toxin types and their different structural framework. However, the tertiary structure and cystine-knot motif formed by the three disulfide bonds is similar to that present in several other polypeptide ion channel inhibitors. CONCLUSIONS: This is the first three-dimensional structure of a 'four-loop' sodium channel inhibitor, and it represents a valuable new structural probe for the pore region of voltage-dependent sodium channels. The distribution of amino acid sidechains in the structure creates several polar and charged patches, and comparison with the mu conotoxins provides a basis for determining the binding surface of the conotoxin GS polypeptide.


Assuntos
Conotoxinas , Peptídeos Cíclicos/química , Conformação Proteica , Bloqueadores dos Canais de Sódio , Canais de Sódio/química , Sequência de Aminoácidos , Animais , Sítios de Ligação , Calorimetria , Simulação por Computador , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Modelos Estruturais , Dados de Sequência Molecular , Moluscos , Venenos de Moluscos , Peptídeos Cíclicos/isolamento & purificação , Peptídeos Cíclicos/metabolismo , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , Software , Soluções
8.
Structure ; 4(4): 417-23, 1996 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-8740364

RESUMO

BACKGROUND: alpha-Conotoxins are peptide toxins, isolated from Conus snails, that block the nicotinic acetylcholine receptor (nAChR). The 16-residue peptides PnIA and PnIB from Conus pennaceus incorporate the same disulfide framework as other alpha-conotoxins but differ in function from most alpha-conotoxins by blocking the neuronal nAChR, rather than the skeletal muscle subtype. The crystal structure determination of PnIA was undertaken to identify structural and surface features that might be important for biological activity. RESULTS: The 1.1 A crystal structure of synthetic PnIA was determined by direct methods using the Shake-and-Bake program. The three-dimensional structure incorporates a beta turn followed by two alpha-helical turns. The conformation is stabilised by two disulfide bridges that form the interior of the molecule, with all other side chains oriented outwards. CONCLUSIONS: The compact architecture of the PnIA toxin provides a rigid framework for presentation of chemical groups that are required for activity. The structure is characterized by distinct hydrophobic and polar surfaces; a 16 A separation of the sole positive and negative charges (these two charged residues being located at opposite ends of the molecule); a hydrophobic region and a protruding tyrosine side chain. These features may be important for the specific interaction of PnIA with neuronal nAChR.


Assuntos
Conotoxinas , Oligopeptídeos/química , Caramujos/química , Sequência de Aminoácidos , Animais , Antagonistas Colinérgicos/química , Cristalografia por Raios X , Modelos Moleculares , Dados de Sequência Molecular , Venenos de Moluscos , Oligopeptídeos/síntese química , Conformação Proteica
9.
Structure ; 5(12): 1585-97, 1997 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-9438859

RESUMO

BACKGROUND: kappa-PVIIA is a 27-residue polypeptide isolated from the venom of Conus purpurascens and is the first member of a new class of conotoxins that block potassium channels. By comparison to other ion channels of eukaryotic cell membranes, voltage-sensitive potassium channels are relatively simple and methodology has been developed for mapping their interactions with small-peptide toxins. PVIIA, therefore, is a valuable new probe of potassium channel structure. This study of the solution structure and mode of channel binding of PVIIA forms the basis for mapping the interacting residues at the conotoxin-ion channel interface. RESULTS: The three-dimensional structure of PVIIA resembles the triple-stranded beta sheet/cystine-knot motif formed by a number of toxic and inhibitory peptides. Subtle structural differences, predominantly in loops 2 and 4, are observed between PVIIA and other conotoxins with similar structural frameworks, however. Electrophysiological binding data suggest that PVIIA blocks channel currents by binding in a voltage-sensitive manner to the external vestibule and occluding the pore. Comparison of the electrostatic surface of PVIIA with that of the well-characterised potassium channel blocker charybdotoxin suggests a likely binding orientation for PVIIA. CONCLUSIONS: Although the structure of PVIIA is considerably different to that of the alphaK scorpion toxins, it has a similar mechanism of channel blockade. On the basis of a comparison of the structures of PVIIA and charybdotoxin, we suggest that Lys19 of PVIIA is the residue which is responsible for physically occluding the pore of the potassium channel.


Assuntos
Conotoxinas , Venenos de Moluscos/química , Venenos de Moluscos/metabolismo , Canais de Potássio/química , Canais de Potássio/metabolismo , Sequência de Aminoácidos , Animais , Eletrofisiologia , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Venenos de Moluscos/síntese química , Oócitos/fisiologia , Técnicas de Patch-Clamp , Bloqueadores dos Canais de Potássio , Canais de Potássio/fisiologia , Ligação Proteica , Estrutura Secundária de Proteína , Soluções , Xenopus laevis
10.
Cancer Res ; 51(21): 5826-36, 1991 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-1718585

RESUMO

The breast cancer-associated epitope (mammary serum antigen or MSA) defined by monoclonal antibody (Mab) 3E1.2 is a neuraminidase-sensitive carbohydrate expressed on MUC-1-encoded molecules. However, the reactivity of Mab 3E1.2 is also reduced by protease treatment of the mucin, which suggests that 3E1.2 binds to multimers of the sialylated carbohydrate in a protein conformation-dependent manner. The common N-acetyl derivative of neuraminic acid (5-acetylneuraminic acid) is not involved in the epitope, since lectins specific for 5-acetylneuraminic acid (linked to GalNAc or Gal) are nonreactive with MSA-positive molecules. However, the N-glycolyl derivative, 5-glycolylneuraminic acid (Neu5Gc), forms a major part of the epitope since both free Neu5Gc and porcine stomach mucin (greater than 90% neuraminic acid as Neu5Gc) inhibit the binding of Mab 3E1.2, while bovine or ovine submaxillary mucins, fetuin, bovine gangliosides, and other carbohydrates do not. Indeed, the presence of Neu5Gc on human tumor mucin was confirmed by electrospray mass spectrometry. Neu5Gc is attached to an O-linked carbohydrate, since the expression of MSA by MCF-7 breast cancer cells is inhibited by the O-glycosylation inhibitor phenyl-N-acetyl-alpha-D-galactosaminide, but not by the N-glycosylation inhibitor tunicamycin, and the epitope is removed by treatment with O-glycanase but not N-glycanase F, endoglycosidase F, or endoglycosidase H, which are specific for N-linked glycans. This is likely to be a core glycan since 3E1.2 reacts after treatment of the mucin with trifluoromethanesulfonic acid, which removes most backbone and peripheral carbohydrates. Treatment with galactosidase or N-acetyl glucosaminidase enhances the binding of Mab 3E1.2, indicating that the Neu5Gc is not attached to galactose or N-acetyl galactosamine. Furthermore, the susceptibility of MSA to treatment with Arthrobacter urea-faciens neuraminidase [which is specific for alpha (2-6)-linked NeuNAc] and the loss in reactivity of GalNAc-specific lectins after periodate oxidation [alpha (2-3)-linked but not alpha (2-6)-linked NeuNAc protects GalNAc from periodate oxidation] indicate that the Neu5Gc may be attached alpha (2-6) to peptide-linked GalNAc. These results show that MSA is a Neu5Gc-containing O-linked core glycan, which represents a unique tumor-associated epitope not previously identified on human mucins.


Assuntos
Anticorpos Monoclonais , Antígenos de Neoplasias/imunologia , Biomarcadores Tumorais/imunologia , Neoplasias da Mama/química , Epitopos/análise , Mucinas/imunologia , Ácidos Neuramínicos/análise , Animais , Antígenos de Neoplasias/análise , Biomarcadores Tumorais/análise , Sequência de Carboidratos , Linhagem Celular , Ensaio de Imunoadsorção Enzimática , Feminino , Glicosídeo Hidrolases , Humanos , Indicadores e Reagentes , Lectinas , Espectrometria de Massas , Camundongos , Dados de Sequência Molecular , Peso Molecular , Mucinas/análise , Neuraminidase
11.
Biochim Biophys Acta ; 1207(1): 93-101, 1994 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-7913833

RESUMO

The structure-function relationships of the neurotoxic polypeptide Sh I, from the sea anemone Stichodactyla helianthus, have been studied using limited proteolysis with trypsin and endoproteinase Lys-C. Major products from each of the proteolytic digests were characterised using N-terminal peptide sequencing and amino-acid analysis or mass spectrometry. Of the six possible tryptic cleavage sites in Sh I, the bonds adjacent to Arg-13 and Lys-47 were found to be the most susceptible, complete cleavage occurring within minutes. Cleavages adjacent to Lys-32 and Lys-46 proceeded more slowly and cleavage adjacent to Arg-45 was the slowest. The sixth potential site, adjacent to Lys-4, was not cleaved at all. All derivatives were inactive as crustacean neurotoxins. Cleavage with endoproteinase Lys-C generated two major products. Derivatives cleaved adjacent to Lys-32 and either Lys-46 or Lys-47 were isolated. Both were inactive, indicating that either cleavage adjacent to Lys-32 or the removal of the C-terminal lysine residue(s) was sufficient to abolish activity. Lys-4 again was refractory to cleavage. The sequence of cleavage events correlated well with the static accessibility of the lysyl and arginyl side chains and to a lesser extent with the accessibility of the carbonyl oxygen of susceptible peptide bonds, as measured from the solution structure of Sh I determined by 1H-NMR. In the case of Lys-4, the lack of cleavage by trypsin and endoproteinase Lys-C may reflect a lack of flexibility in this region. The effects of the various cleavages on biological activity emphasise that the surface of the protein near the reverse turn encompassing Asp-6, Asp-7 and Glu-8 is essential for activity.


Assuntos
Venenos de Cnidários/química , Neurotoxinas/química , Sequência de Aminoácidos , Arginina/química , Sítios de Ligação , Ativação Enzimática , Lisina/química , Metaloendopeptidases , Modelos Moleculares , Dados de Sequência Molecular , Solventes , Relação Estrutura-Atividade , Tripsina
12.
J Mol Biol ; 278(2): 401-15, 1998 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-9571060

RESUMO

The three possible disulfide bonded isomers of alpha-conotoxin GI have been selectively synthesised and their structures determined by 1H NMR spectroscopy. alpha-Conotoxin GI derives from the venom of Conus geographus and is a useful neuropharmacological tool as it selectively binds to the nicotinic acetylcholine receptor (nAChR), a ligand-gated ion channel involved in nerve signal transmission. The peptide has the sequence ECCNPACGRHYSC-NH2, and the three disulfide bonded isomers are referred to as GI(2-7;3-13), GI(2-13;3-7) and GI(2-3;7-13). The NMR structure for the native isomer GI(2-7;3-13) is of excellent quality, with a backbone pairwise RMSD of 0.16 A for a family of 35 structures, and comprises primarily a distorted 310 helix between residues 5 to 11. The two non-native isomers exhibit multiple conformers in solution, with the major populated forms being different in structure both from each other and from the native form. Structure-activity relationships for the native GI(2-7;3-13) as well as the role of the disulfide bonds on folding and stability of the three isomers are examined. It is concluded that the disulfide bonds in alpha-conotoxin GI play a crucial part in determining both the structure and stability of the peptide. A trend for increased conformational heterogeneity was observed in the order of GI(2-7;3-13)

Assuntos
Conotoxinas , Dissulfetos/química , Venenos de Moluscos/química , Peptídeos Cíclicos/química , Sequência de Aminoácidos , Animais , Isomerismo , Modelos Moleculares , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular , Estrutura Secundária de Proteína , Temperatura
13.
J Mol Biol ; 263(2): 297-310, 1996 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-8913308

RESUMO

The omega-conotoxins are a set of structurally related peptides that have a wide range of specificities for different subtypes of the voltage-sensitive calcium channel (VSCC). To understand their VSCC subtype differentiation we studied the structure of two naturally occurring omega-conotoxins, MVIIA (specific to N-type) and SVIB (specific to P/Q-type) and a synthetic hybrid, SNX-202, which has altered specificities to both VSCC subtypes. The secondary structures of the three peptides are almost identical, consisting of a triple-stranded beta-sheet and several turns. A comparison of NMR data emphasizes the structural similarities between the peptides and highlights some minor structural differences. In the three-dimensional structures of SVIB and MVIIA these are manifested as orientational differences between two key loops. The structural rigidity of MVIIA was also examined. H alpha shifts are similar in a range of solvents, indicating that there are no solvent-induced changes in structure. The omega-conotoxins form a consensus structure despite differences in sequence and VSCC subtype specificity. This indicates that the omega-conotoxin macrosites for the N/P/Q-subfamily of VSCCs are related, with specificity for receptor targets being conferred by the positions of functional side-chains on the surface of the peptides.


Assuntos
Peptídeos/química , ômega-Conotoxinas , Sequência de Aminoácidos , Canais de Cálcio/química , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Conformação Proteica
14.
J Mol Biol ; 289(5): 1405-21, 1999 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-10373375

RESUMO

The omega-conotoxins are a set of structurally related, four-loop, six cysteine containing peptides, that have a range of selectivities for different subtypes of the voltage-sensitive calcium channel (VSCC). To investigate the basis of the selectivity displayed by these peptides, we have studied the binding affinities of two naturally occurring omega-conotoxins, MVIIA and MVIIC and a series of 14 MVIIA/MVIIC loop hybrids using radioligand binding assays for N and P/Q-type Ca2+channels in rat brain tissue. A selectivity profile was developed from the ratio of relative potencies at N-type VSCCs (using [125I]GVIA radioligand binding assays) and P/Q-type VSCCs (using [125I]MVIIC radioligand binding assays). In these peptides, loops 2 and 4 make the greatest contribution to VSCC subtype selectivity, while the effects of loops 1 and 3 are negligible. Peptides with homogenous combinations of loop 2 and 4 display clear selectivity preferences, while those with heterogeneous combinations of loops 2 and 4 are less discriminatory. 1H NMR spectroscopy revealed that the global folds of MVIIA, MVIIC and the 14 loop hybrid peptides were similar; however, several differences in local structure were identified. Based on the binding data and the 3D structures of MVIIA, GVIA and MVIIC, we have developed a preliminary pharmacophore based on the omega-conotoxin residues most likely to interact with the N-type VSCC.


Assuntos
Bloqueadores dos Canais de Cálcio/química , Canais de Cálcio/química , Venenos de Moluscos/química , Peptídeos/química , Splicing de RNA , ômega-Conotoxinas , Sequência de Aminoácidos , Animais , Bloqueadores dos Canais de Cálcio/metabolismo , Canais de Cálcio/metabolismo , Dados de Sequência Molecular , Venenos de Moluscos/metabolismo , Peptídeos/metabolismo , Conformação Proteica , Ratos , Homologia de Sequência de Aminoácidos , Relação Estrutura-Atividade
15.
Protein Sci ; 2(7): 1085-91, 1993 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-8358291

RESUMO

An important goal in the de novo design of enzymes is the control of molecular geometry. To this end, an analog of the protease from human immunodeficiency virus 1 (HIV-1 protease) was prepared by total chemical synthesis, containing a constrained, nonpeptidic type II' beta-turn mimic of predetermined three-dimensional structure. The mimic beta-turn replaced residues Gly16,17 in each subunit of the homodimeric molecule. These residues constitute the central amino acids of two symmetry-related type I' beta-turns in the native, unliganded enzyme. The beta-turn mimic-containing enzyme analog was fully active, possessed the same substrate specificity as the Gly16,17-containing enzyme, and showed enhanced resistance to thermal inactivation. These results indicate that the precise geometry of the beta-turn at residues 15-18 in each subunit is not critical for activity, and that replacement of the native sequence with a rigid beta-turn mimic can lead to enhanced protein stability. Finally, the successful incorporation of a fixed element of secondary structure illustrates the potential of a "molecular kit set" approach to protein design and synthesis.


Assuntos
Protease de HIV/química , Sequência de Aminoácidos , Cisteína/análogos & derivados , Dipeptídeos/química , Estabilidade Enzimática , Protease de HIV/metabolismo , Temperatura Alta , Modelos Moleculares , Dados de Sequência Molecular , Peptídeos Cíclicos/química , Engenharia de Proteínas , Estrutura Secundária de Proteína , Especificidade por Substrato
16.
Protein Sci ; 7(8): 1738-49, 1998 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10082370

RESUMO

Two synthetic analogues of murine epidermal growth factor, [Abu6, 20] mEGF4-48 (where Abu denotes amino-butyric acid) and [G1, M3, K21, H40] mEGF1-48, have been investigated by NMR spectroscopy. [Abu6, 20] mEGF4-48 was designed to determine the contribution of the 6-20 disulfide bridge to the structure and function of mEGF. The overall structure of this analogue was similar to that of native mEGF, indicating that the loss of the 6-20 disulfide bridge did not affect the global fold of the molecule. Significant structural differences were observed near the N-terminus, however, with the direction of the polypeptide chain between residues four and nine being altered such that these residues were now located on the opposite face of the main beta-sheet from their position in native mEGF. Thermal denaturation experiments also showed that the structure of [Abu6, 20] mEGF4-48 was less stable than that of mEGF. Removal of this disulfide bridge resulted in a significant loss of both mitogenic activity in Balb/c 3T3 cells and receptor binding on A431 cells compared with native mEGF and mEGF4-48, implying that the structural changes in [Abu6, 20] mEGF4-48, although limited to the N-terminus, were sufficient to interfere with receptor binding. The loss of binding affinity probably arose mainly from steric interactions of the dislocated N-terminal region with part of the receptor binding surface of EGF. [G1, M3, K21, H40] mEGF1-48 was also synthesized in order to compare the synthetic polypeptide with the corresponding product of recombinant expression. Its mitogenic activity in Balb/c 3T3 cells was similar to that of native mEGF and analysis of its 1H chemical shifts suggested that its structure was also very similar to native.


Assuntos
Dissulfetos/química , Fator de Crescimento Epidérmico/química , Cromatografia Líquida de Alta Pressão , Cisteína/química , Concentração de Íons de Hidrogênio , Espectroscopia de Ressonância Magnética , Espectrometria de Massas , Modelos Moleculares , Modelos Estatísticos , Estrutura Molecular , Mutagênese , Homologia de Sequência de Aminoácidos , Relação Estrutura-Atividade , Temperatura
17.
FEBS Lett ; 419(2-3): 191-6, 1997 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-9428632

RESUMO

The solution structure of robustoxin, the lethal neurotoxin from the Sydney funnel-web spider Atrax robustus, has been determined from 2D 1H NMR data. Robustoxin is a polypeptide of 42 residues cross-linked by four disulphide bonds, the connectivities of which were determined from NMR data and trial structure calculations to be 1-15, 8-20, 14-31 and 16-42 (a 1-4/2-6/3-7/5-8 pattern). The structure consists of a small three-stranded, anti-parallel beta-sheet and a series of interlocking gamma-turns at the C-terminus. It also contains a cystine knot, thus placing it in the inhibitor cystine knot motif family of structures, which includes the omega-conotoxins and a number of plant and animal toxins and protease inhibitors. Robustoxin contains three distinct charged patches on its surface, and an extended loop that includes several aromatic and non-polar residues. Both of these structural features may play a role in its binding to the voltage-gated sodium channel.


Assuntos
Neurotoxinas/química , Venenos de Aranha/química , Aranhas/química , Animais , Espectroscopia de Ressonância Magnética , Conformação Proteica , Venenos de Aranha/metabolismo , Aranhas/metabolismo
18.
FEBS Lett ; 273(1-2): 15-8, 1990 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-2226846

RESUMO

The beta-turn is a common secondary structure in biologically active peptides and globular proteins, where it is widely thought to serve as a molecular recognition site for many biological processes. Although the primary beta-turn recognition requirements are thought to be straightforward, relating mainly to the relative positions of the peptide sidechains, current classifications of beta-turns are complex and are based solely upon the very variable geometry of the peptide backbone. We demonstrate here that beta-turns can be described in terms of a single dihedral angle, which we have called beta, which provides a complete description of the spatial relationship between the entry and exit peptide bonds as well as the relative orientations of the intervening sidechains for any beta-turn. This description should prove particularly useful in the development and application of novel peptide mimetic drugs, compounds for which a classification based on a peptide backbone geometry may be entirely irrelevant.


Assuntos
Peptídeos/química , Conformação Proteica , Proteínas/química , Simulação por Computador , Modelos Moleculares
19.
FEBS Lett ; 488(1-2): 85-90, 2001 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-11163801

RESUMO

Human S100A12 (extracellular newly identified RAGE (receptor for advanced glycosylation end products)-binding protein), a new member of the S100 family of EF-hand calcium-binding proteins, was chemically synthesised using highly optimised 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate/tert-butoxycarbonyl in situ neutralisation solid-phase chemistry. Circular dichroism studies indicated that CaCl(2) decreased the helical content by 27% whereas helicity was marginally increased by ZnCl(2). The propensity of S100A12 to dimerise was examined by electrospray ionisation time-of-flight mass spectrometry which clearly demonstrated the prevalence of the non-covalent homodimer (20890 Da). Importantly, synthetic human S100A12 in the nanomolar range was chemotactic for neutrophils and macrophages in vitro.


Assuntos
Proteínas de Ligação ao Cálcio/síntese química , Proteínas de Ligação ao Cálcio/farmacologia , Fatores Quimiotáticos/síntese química , Fatores Quimiotáticos/farmacologia , Quimiotaxia/efeitos dos fármacos , Proteínas S100 , Motivos de Aminoácidos , Sequência de Aminoácidos , Sítios de Ligação , Cálcio/metabolismo , Cálcio/farmacologia , Proteínas de Ligação ao Cálcio/química , Linhagem Celular , Fatores Quimiotáticos/química , Cromatografia Líquida de Alta Pressão , Dicroísmo Circular , Dimerização , Células HL-60 , Humanos , Macrófagos/citologia , Macrófagos/efeitos dos fármacos , Espectrometria de Massas , Dados de Sequência Molecular , Neutrófilos/citologia , Neutrófilos/efeitos dos fármacos , Estrutura Secundária de Proteína/efeitos dos fármacos , Proteína S100A12 , Alinhamento de Sequência , Zinco/metabolismo , Zinco/farmacologia
20.
J Med Chem ; 42(13): 2364-72, 1999 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-10395477

RESUMO

alpha-Conotoxin ImI derives from the venom of Conus imperialis and is the first and only small-peptide ligand that selectively binds to the neuronal alpha7 homopentameric subtype of the nicotinic acetylcholine receptor (nAChR). This receptor subtype is a possible drug target for several neurological disorders. The cysteines are connected in the pairs Cys2-Cys8 and Cys3-Cys12. To date it is the only alpha-conotoxin with a 4/3 residue spacing between the cysteines. The structure of ImI has been determined by 1H NMR spectroscopy in aqueous solution. The NMR structure is of high quality, with a backbone pairwise rmsd of 0.34 A for a family of 19 structures, and comprises primarily a series of nested beta turns. Addition of organic solvent does not perturb the solution structure. The first eight residues of ImI are identical to the larger, but related, conotoxin EpI and adopt a similar structure, despite a truncated second loop. Residues important for binding of ImI to the alpha7 nAChR are all clustered on one face of the molecule. Once further binding data for EpI and ImI are available, the ImI structure will allow for design of novel alpha7 nAChR-specific agonists and antagonists with a wide range of potential pharmaceutical applications.


Assuntos
Conotoxinas , Venenos de Moluscos/química , Oligopeptídeos/química , Sequência de Aminoácidos , Modelos Moleculares , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular , Oligopeptídeos/síntese química , Prótons
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