Detalhe da pesquisa
1.
SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms.
Nat Methods
; 21(5): 793-797, 2024 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-38509328
2.
Nucleotide-level distance metrics to quantify alternative splicing implemented in TranD.
Nucleic Acids Res
; 52(5): e28, 2024 Mar 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-38340337
3.
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases.
Nucleic Acids Res
; 50(W1): W551-W559, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35609982
4.
MultiBaC: an R package to remove batch effects in multi-omic experiments.
Bioinformatics
; 38(9): 2657-2658, 2022 04 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-35238331
5.
Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots.
Mol Syst Biol
; 17(6): e9864, 2021 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-34132490
6.
Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation.
PLoS Biol
; 17(4): e2006506, 2019 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-30978178
7.
SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.
Genome Res
; 2018 Feb 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-29440222
8.
A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.
Brief Bioinform
; 20(2): 471-481, 2019 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-29040385
9.
Padhoc: a computational pipeline for pathway reconstruction on the fly.
Bioinformatics
; 36(Suppl_2): i795-i803, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381819
10.
MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants.
Bioinformatics
; 36(Suppl_2): i618-i624, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381847
11.
Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress-dependent mRNAs.
EMBO Rep
; 20(12): e47964, 2019 12 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-31680439
12.
A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats.
Cell Biol Toxicol
; 37(1): 129-149, 2021 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33404927
13.
Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes.
Genome Res
; 27(11): 1807-1815, 2017 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-29025893
14.
Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance.
BMC Plant Biol
; 20(1): 539, 2020 Nov 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33256589
15.
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.
PLoS Comput Biol
; 15(11): e1006555, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-31682608
16.
PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data.
Nucleic Acids Res
; 46(W1): W503-W509, 2018 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-29800320
17.
An acetylatable lysine controls CRP function in E. coli.
Mol Microbiol
; 107(1): 116-131, 2018 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-29105190
18.
GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text.
Bioinformatics
; 34(9): 1547-1554, 2018 05 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29272325
19.
Identification and visualization of differential isoform expression in RNA-seq time series.
Bioinformatics
; 34(3): 524-526, 2018 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-28968682
20.
Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway.
Histopathology
; 75(4): 496-507, 2019 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-31025430