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1.
Arch Biochem Biophys ; 662: 134-142, 2019 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-30529570

RESUMO

Two novel medicinally important legume lectins from Bauhinia purpurea (BPL) and Wisteria floribunda (WFL) possessing extended sugar binding site were investigated for functional and conformational transitions using biochemical and biophysical techniques as well as bioinformatical tools. Homology model of BPL was constructed using the Schrodinger suite and docked with N-acetyl galactosamine and T-antigen disaccharide (Galß1-3GalNAcαO-Me). The longer loop D in the structure of WFL compared to that in BPL was found to be responsible for its specificity to LacdiNac (ß-D-GalNAc-[1 → 4]-DGlcNAc) over Galß1-3GalNAc. BPL remained functionally stable up to 40 °C whereas WFL remained stable upto 70 °C indicating the strength of the sugar binding site geometry. Both the lectins showed intense but non-specific secondary structure in the range of 65-90 °C. WFL showed rapid aggregation above 80 °C as indicated by light scattering intensity. The lectins showed simultaneous dissociation and multistate unfolding in the vicinity of GdnHCl. At pH 1.0, both the lectins exhibited molten globule like structures, which were characterized further and were found to respond in a different way towards denaturants. The results have provided valuable insights into the molecular basis of the activity and stability of the two lectins.


Assuntos
Fabaceae/química , Lectinas/química , Açúcares/química , Wisteria/química , Sítios de Ligação , Ligantes , Simulação de Dinâmica Molecular , Conformação Proteica
2.
Glycobiology ; 25(4): 357-67, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25429048

RESUMO

Trehalose, a non-reducing disaccharide, is widespread throughout the biological world. It is the major blood sugar in insects playing a crucial role as an instant source of energy and in dealing with abiotic stresses. The hydrolysis of trehalose is under the enzymatic control of trehalase. The enzyme trehalase is gaining interest in insect physiology as it regulates energy metabolism and glucose generation via trehalose catabolism. The two forms of insect trehalase namely, Tre-1 and Tre-2, are important in energy supply, growth, metamorphosis, stress recovery, chitin synthesis and insect flight. Insect trehalase has not been reviewed in depth and the information available is quite scattered. The present mini review discusses our recent understanding of the regulation, mechanism and biochemical characterization of insect trehalase with respect to its physiological role in vital life functions. We also highlight the molecular and biochemical properties of insect trehalase that makes it amenable to competitive inhibition by most glycosidase inhibitors. Due to its crucial role in carbon metabolism in insects, application of inhibitors against trehalose can form a promising area towards formulating strategies for insect pest control.


Assuntos
Proteínas de Insetos/fisiologia , Trealase/fisiologia , Animais , Domínio Catalítico , Inibidores Enzimáticos/farmacologia , Humanos , Proteínas de Insetos/antagonistas & inibidores , Proteínas de Insetos/química , Inseticidas/farmacologia , Controle de Pragas , Trealase/antagonistas & inibidores , Trealase/química , Trealose/metabolismo
3.
Biochim Biophys Acta ; 1834(3): 708-16, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23270996

RESUMO

Polyproline II (PPII) fold, an unusual structural element was detected in the serine protease from Nocardiopsis sp. NCIM 5124 (NprotI) based on far UV circular dichroism spectrum, structural transitions of the enzyme in presence of GdnHCl and a distinct isodichroic point in chemical and thermal denaturation. The functional activity and conformational transitions of the enzyme were studied under various denaturing conditions. Enzymatic activity of NprotI was stable in the vicinity of GdnHCl upto 6.0M concentration, organic solvents viz. methanol, ethanol, propanol (all 90% v/v), acetonitrile (75% v/v) and proteases such as trypsin, chymotrypsin and proteinase K (NprotI:protease 10:1). NprotI seems to be a kinetically stable protease with a high energy barrier between folded and unfolded states. Also, an enhancement in the activity of the enzyme was observed in 1M GdnHCl upto 8h, in organic solvents (75% v/v) for 72h and in presence of proteolytic enzymes. The polyproline fold remained unaltered or became more prominent under the above mentioned conditions. However, it diminished gradually during thermal denaturation above 60°C. Thermal transition studies by differential scanning calorimetry (DSC) showed scan rate dependence as well as irreversibility of denaturation, the properties characteristic of kinetically stable proteins. This is the first report of PPII helix being the global conformation of a non structural protein, an alkaline serine protease, from a microbial source, imparting kinetic stability to the protein.


Assuntos
Proteínas de Bactérias/química , Endopeptidases/química , Peptídeos/química , Dobramento de Proteína , 1-Propanol/química , 1-Propanol/farmacologia , Acetonitrilas/química , Acetonitrilas/farmacologia , Actinomycetales/enzimologia , Proteínas de Bactérias/metabolismo , Biocatálise/efeitos dos fármacos , Varredura Diferencial de Calorimetria , Dicroísmo Circular , Endopeptidases/metabolismo , Estabilidade Enzimática , Etanol/química , Etanol/farmacologia , Guanidina/química , Guanidina/farmacologia , Cinética , Metanol/química , Metanol/farmacologia , Peptídeos/metabolismo , Ligação Proteica , Desdobramento de Proteína , Temperatura , Tripsina/química , Tripsina/metabolismo
4.
Eur Biophys J ; 43(8-9): 393-403, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24925574

RESUMO

Retention of total activity of the subtilisin-like serine protease from Beauveria sp. MTCC 5184 (Bprot) in the vicinity of (1) 3 M GdnHCl for 12 h, (2) 50% methanol and dimethyl sulfoxide each for 24 h, and (3) proteolytic enzymes (trypsin, chymotrypsin, and proteinase K) for 48 h led to expect the enzyme to be a kinetically stable protein. Also, the structure of the protein was stable at pH 2.0. Biophysical characterization and conformational transitions were monitored using steady-state and time-resolved fluorescence, FTIR, and CD spectroscopy. Single tryptophan in the protein exists as two conformers, in hydrophobic and polar environment. The secondary structure of Bprot was stable in 3 M GdnHCl as seen in far-UV CD spectra. The active fraction of Bprot obtained from size-exclusion chromatography in the presence of GdnHCl (1.0-3.0 M) eluted at reduced retention time. The peak area of inactive or denatured protein with the same retention time as that of native protein increased with increasing concentration of denaturant (1.0-4.0 M GdnHCl). However, the kinetics of GdnHCl-induced unfolding as studied from intrinsic fluorescence revealed k unf of native protein to be 5.407 × 10(-5) s(-1) and a half-life of 3.56 h. The enzyme is thermodynamically stable in spite of being resistant to the denaturant, which could be due to the effect of GdnHCl imparting rigidity to the active fraction and simultaneously unfolding the partially unfolded protein that exists in equilibrium with the folded active protein. Thermal and pH denaturation of Bprot exhibited interesting structural transitions.


Assuntos
Beauveria/enzimologia , Subtilisina/química , Subtilisina/metabolismo , Estabilidade Enzimática/efeitos dos fármacos , Guanidina/farmacologia , Concentração de Íons de Hidrogênio , Cinética , Conformação Proteica , Desnaturação Proteica/efeitos dos fármacos , Proteólise , Solventes/farmacologia , Temperatura
5.
J Fluoresc ; 24(5): 1363-70, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-25169767

RESUMO

The single tryptophan residue from Nocardiopsis sp. serine protease (NprotI) was studied for its microenvironment using steady state and time-resolved fluorescence. The emission maximum was observed at 353 nm with excitation at 295 nm indicating tryptophan to be solvent exposed. Upon denaturation with 6 M guanidinum thiocyanate (GuSCN) the emission maxima was shifted to 360 nm. Solute quenching studies were performed with neutral (acrylamide) and ionic (I(-) and Cs(+)) quenchers to probe the exposure and accessibility of tryptophan residue of the protein. Maximum quenching was observed with acrylamide. In the native state, quenching was not observed with Cs(+) indicating presence of only positively charged environment surrounding tryptophan. However; in denatured protein, quenching was observed with Cs(+), indicating charge reorientation after denaturation. No quenching was observed with Cs(+) even at pH 1.0 or 10.0; while at acidic pH, a higher rate of quenching was observed with KI. This indicated presence of more positive charge surrounding tryptophan at acidic pH. In time resolved fluorescence measurements, the fluorescence decay curves could be best fitted to monoexponential pattern with lifetimes of 5.13 ns for NprotI indicating one conformer of the trp. Chemical modification studies with phenyl glyoxal suggested presence of Arg near the active site of the enzyme. No inhibition was seen with soyabean trypsin and limabean inhibitors, while, CanPI uncompetitively inhibited NprotI. Various salts from Hofmeister series were shown to decrease the activity and PPII content of NprotI.


Assuntos
Peptídeos/metabolismo , Poríferos/enzimologia , Serina Proteases/química , Serina Proteases/metabolismo , Triptofano/metabolismo , Animais , Fluorescência , Cinética , Peptídeos/química , Dobramento de Proteína , Triptofano/química
6.
J Fluoresc ; 23(6): 1147-55, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23736907

RESUMO

Holothuria scabra produces a monomeric lectin (HSL) of 182 kDa. HSL showed strong antibacterial activity and induced bacterial agglutination under in vitro conditions, indicating its role in animals' innate immune responses. Very few lectins have been reported from echinoderms and none of these lectins have been explored in detail for their sugar-binding kinetics. Affinity, kinetics and thermodynamic analysis of glycans and glycoproteins binding to HSL were studied by fluorescence and surface plasmon resonance spectroscopy. Lectin binds with higher affinity to O-linked than N-linked asialo glycans, and the affinities were relatively higher than that for sialated glycans and glycoproteins. T-antigen α-methyl glycoside was the most potent ligand having the highest affinity (Ka 8.32 ×10(7) M(-1)). Thermodynamic and kinetic analysis indicated that the binding of galactosyl Tn-antigen and asialo glycans is accompanied by an enthalpic contribution in addition to higher association rate coupled by low activation energy for the association process. Presence of sialic acid or protein matrix inhibits binding. Higher affinity of HSL for O-glycans than N-glycans had biological implications; since HSL specifically recognizes bacteria, which have mucin or O-glycan cognate on their cell surfaces and play a major role in animal innate immunity. Since, HSL had higher affinity to T-antigen, makes it a useful tool for cancer diagnostic purpose.


Assuntos
Glicoproteínas/química , Holothuria/química , Lectinas/química , Polissacarídeos/química , Termodinâmica , Animais , Sítios de Ligação , Fluorescência , Cinética , Ressonância de Plasmônio de Superfície
7.
Biochem Biophys Res Commun ; 419(4): 638-42, 2012 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-22387478

RESUMO

In the current scenario of global climate change, desiccation is considered as one of the major environmental stressors for the biota exposed to altered levels of ambient temperature and humidity. Drosophila melanogaster, a cosmopolitan terrestrial insect has been chosen as a humidity-sensitive bioindicator model for the present study since its habitat undergoes frequent stochastic and/or seasonally aggravated dehydration regimes. We report here for the first time the occurrence of anhydrobiosis in D. melanogaster larvae by subjecting them to desiccation stress under laboratory conditions. Larvae desiccated for ten hours at <5% relative humidity could enter anhydrobiosis and could revive upon rehydration followed by resumption of active metabolism. As revealed by FTIR and HPLC analyzes, our findings strongly indicated the synthesis and accumulation of trehalose in the desiccating larvae. Biochemical measurements pointed out the desiccation-responsive trehalose metabolic pathway that was found to be coordinated in concert with the enzymes trehalose 6-phosphate synthase and trehalase. Further, an inhibitor-based experimental approach using deoxynojirimycin, a specific trehalase inhibitor, demonstrated the pivotal role of trehalose in larval anhydrobiosis of D. melanogaster. We therefore propose trehalose as a potential marker for the assessment of anhydrobiosis in Drosophila. The present findings thus add to the growing list of novel biochemical markers in specific bioindicator organisms for fulfilling the urgent need of environmental biomonitoring of climate change.


Assuntos
Desidratação/metabolismo , Drosophila melanogaster/fisiologia , Estresse Fisiológico , Trealose/metabolismo , Água/metabolismo , Animais , Biomarcadores/metabolismo , Dessecação , Drosophila melanogaster/enzimologia , Glucosiltransferases/metabolismo , Umidade , Larva/metabolismo , Larva/fisiologia
8.
J Fluoresc ; 22(1): 431-41, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21947569

RESUMO

In mammalian cells, the heme-regulated inhibitor (HRI) plays a critical role in the regulation of protein synthesis at the initiation step through phosphorylation of α-subunit of the eukaryotic initiation factor 2 (eIF2). In this study we have cloned and performed biophysical characterization of the kinase catalytic domain (KD) of rabbit HRI. The KD described here comprises kinase 1, the kinase insertion domain (KI) and kinase 2. We report here the existence of an active and stable monomer of HRI (KD). The HRI (KD) containing three tryptophan residues was examined for its conformational transitions occurring under various denaturing conditions using steady-state and time-resolved tryptophan fluorescence, circular dichroism (CD) and hydrophobic dye binding. The parameter A and phase diagram analysis revealed multi-state unfolding and existence of three stable intermediates during guanidine hydrochloride (Gdn-HCl) induced unfolding of HRI (KD). The protein treated with 6 M Gdn-HCl showed collisional and static mechanism of acrylamide quenching and the constants (K(sv) = 3.08 M(-1) and K(s)= 5.62 M(-1)) were resolved using time resolved fluorescence titration. Based on pH, guanidine hydrochloride and temperature mediated transitions, HRI (KD) appears to exemplify a rigid molten globule-like intermediate with compact secondary structure, altered tertiary structure and exposed hydrophobic patches at pH 3.0. The results indicate the inherent structural stability of HRI (KD), a member of the class of stress response proteins.


Assuntos
Domínio Catalítico , Biossíntese de Proteínas , eIF-2 Quinase/química , eIF-2 Quinase/metabolismo , Acrilamida/química , Animais , Clonagem Molecular , Guanidina/farmacologia , Concentração de Íons de Hidrogênio , Peso Molecular , Desdobramento de Proteína/efeitos dos fármacos , Coelhos , Análise Espectral , eIF-2 Quinase/genética , eIF-2 Quinase/isolamento & purificação
9.
J Fluoresc ; 21(2): 753-63, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21069441

RESUMO

Biophysical characterization of a lectin from Ariesaema curvatum (ACL) was carried out using steady state as well as time resolved fluorescence and CD spectroscopy under various denaturing conditions. An intermediate with altered tryptophan microenvironment was detected in the phase diagram, which exibited pronounced secondary structure and hemagglutinating activity in presence of 0.25 M Gdn-HCl. An acid induced molten- globule like structure possessing activity and higher thermostability was detected. Transition to the molten globule state was reversible in nature. The lectin retained hemagglutinating activity even after incubation at 95 °C. Both chemical and thermal unfolding of the lectin were found to consist of multistate processes. Fluorescence quenching of ACL was strong with acrylamide and KI. The single tryptophan was found to be surrounded by high density of the positively charged amino acid residues as shown by a ten fold higher K(sv) for KI compared to that for CsCl. The average lifetime of tryptophan fluorescence increased from 1.24 ns in the native state to 1.72 ns in the denatured state.


Assuntos
Arisaema , Lectinas de Plantas/química , Metabolismo dos Carboidratos , Concentração de Íons de Hidrogênio , Lectinas de Plantas/metabolismo , Conformação Proteica/efeitos dos fármacos , Desnaturação Proteica/efeitos dos fármacos , Estabilidade Proteica/efeitos dos fármacos , Espectrometria de Fluorescência , Especificidade por Substrato , Temperatura
10.
Biochem Biophys Res Commun ; 403(3-4): 391-7, 2010 Dec 17.
Artigo em Inglês | MEDLINE | ID: mdl-21087596

RESUMO

The relevance of partially ordered states of proteins (such as the molten-globule state) in cellular processes is beginning to be understood. We examined the conformational transitions in a multimeric and high molecular weight class II α-mannosidase from Canavalia ensiformis (Jack Bean) (Jbα-man) utilizing intrinsic fluorescence, solute quenching, hydrophobic dye binding, size exclusion chromatography and circular dichroism (CD) spectroscopy for the protein in presence of Guanidine hydrochloride (GdnHCl). The decomposition analysis of the protein spectra obtained during unfolding showed progressive appearance of class S, I, II and III trp. The parameter A and spectral center of mass showed multi state unfolding of the protein and phase diagram analysis revealed formation of an intermediate of Jbα-man in the vicinity of 1 M GdnHCl. The intermediate exhibited compact secondary and distorted tertiary structure with exposed hydrophobic amino acids on the surface, indicating the molten-globule nature. The dissociation, partial unfolding and aggregation of Jbα-man occurred simultaneously during chemical denaturation. The molten-globule possessed slightly higher hydrodynamic radius, perturbance in the structure up to 60 °C and stability of the structure up to 80 °C unlike the native Jack Bean α-mannosidase. The modes of chemical and thermal denaturation of the native protein were different. The solute quenching parameters confirmed the altered confirmation of the intermediate. Taken together, our results constitute one of the early reports of formation of GdnHCl induced molten globule in a class II α-mannosidase.


Assuntos
Canavalia/enzimologia , alfa-Manosidase/química , Cromatografia em Gel , Dicroísmo Circular , Fluorescência , Guanidina/química , Temperatura Alta , Desnaturação Proteica , Dobramento de Proteína , Estabilidade Proteica
11.
J Fluoresc ; 20(4): 827-36, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20204683

RESUMO

The conformational transitions in an oligomeric and high molecular weight class II alpha-mannosidase from Aspergillus fischeri were examined using fluorescence and CD spectroscopy under chemical, thermal and acid denaturing conditions. The enzyme lost the activity first and then the overall folded conformation and secondary structure. The midpoint values of GdnHCl mediated changes measured by inactivation; fluorescence and negative ellipticity were 0.48 M, 1.5 M and 1.9 M, respectively. The protein almost completely unfolded in 4.0 M GdnHCl but not at 90 degrees C. The inactivation and unfolding were irreversible. At pH 2.0, the protein exhibited molten-globule like intermediate with rearranged secondary and tertiary structures and exposed hydrophobic amino acids on the surface. This species showed increased accessibility of Trp to the quenchers and got denatured with GdnHCl in a different manner. The insoluble aggregates of a thermally denatured protein could be detected only in the presence of 0.25-0.75 M GdnHCl.


Assuntos
Aspergillus/enzimologia , Manosidases/química , Manosidases/metabolismo , Dicroísmo Circular , Ativação Enzimática , Guanidina/farmacologia , Concentração de Íons de Hidrogênio , Desnaturação Proteica/efeitos dos fármacos , Dobramento de Proteína , Multimerização Proteica , Estrutura Quaternária de Proteína , Espectrometria de Fluorescência , Temperatura
12.
Protein Pept Lett ; 27(9): 870-877, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32268858

RESUMO

BACKGROUND: Individual and collaborative efforts are being made worldwide in search of effective chemical or natural drugs with less severe side-effects for treatment of cancer. Due to the specificity and selectivity properties of lectins for saccharides, several plant lectins are known to induce cytotoxicity into tumor cells. OBJECTIVE: To study the antiproliferative activity of two N-acetyl galactosamine specific plant lectins from seeds of Bauhinia purpurea and Wisteria floribunda against MCF-7 Breast cancer cell lines. METHODS: MTT, lactate dehydrogenase (LDH) leakage, reactive oxygen species (ROS), and caspase- 3 assays and flow cytometry for cell cycle analysis were performed. RESULTS: The agglutinins BPL and WFL; 446 µgml-1 (2.2 µM) and 329 µgml-1 (2.8 µM), respectively caused remarkable concentration-dependent antiproliferative effect on MCF-7. The effect was seen to be a consequence of binding of the lectin to the cell surface and triggering S and G2 phase arrest. Apoptosis induced was found to be associated with LDH leakage, cell cycle arrest and ROS generation. The apoptotic signal was observed to be amplified by activation of caspase-3 resulting in cell death. CONCLUSION: The study provides a base for detailed investigation and further use of lectins in cancer studies.


Assuntos
Antineoplásicos Fitogênicos/farmacologia , Apoptose/efeitos dos fármacos , Neoplasias da Mama , Lectinas de Plantas/farmacologia , Transdução de Sinais/efeitos dos fármacos , Neoplasias da Mama/tratamento farmacológico , Neoplasias da Mama/metabolismo , Neoplasias da Mama/patologia , Caspase 3/metabolismo , Feminino , Humanos , Células MCF-7 , Proteínas de Neoplasias/metabolismo , Receptores de N-Acetilglucosamina
13.
Biochem Biophys Res Commun ; 390(2): 273-9, 2009 Dec 11.
Artigo em Inglês | MEDLINE | ID: mdl-19800319

RESUMO

The alpha-subunit of the human eukaryotic initiation factor 2 (heIF2alpha), a GTP binding protein, plays a major role in the initiation of protein synthesis. During various cytoplasmic stresses, eIF2alpha gets phosphorylated by eIF2alpha-specific kinases resulting in inhibition of protein synthesis. The cloned and over expressed heIF2alpha, a protein with a single tryptophan (trp) residue was examined for its conformational characteristics using steady-state and time-resolved tryptophan fluorescence, circular dichroism (CD) and hydrophobic dye binding. The steady-state fluorescence spectrum, fluorescence lifetimes (tau(1)=1.13ns and tau(2)=4.74ns) and solute quenching studies revealed the presence of trp conformers in hydrophobic and differential polar environment at any given time. Estimation of the alpha-helix and beta-sheet content showed: (i) more compact structure at pH 2.0, (ii) distorted alpha-helix and rearranged beta-sheet in presence of 4M guanidine hydrochloride and (iii) retention of more than 50% ordered structure at 95 degrees C. Hydrophobic dye binding to the protein with loosened tertiary structure was observed at pH 2.0 indicating the existence of a molten globule-like structure. These observations indicate the inherent structural stability of the protein under various denaturing conditions.


Assuntos
Fator de Iniciação 2 em Eucariotos/química , Triptofano/química , Dicroísmo Circular , Clonagem Molecular , Fator de Iniciação 2 em Eucariotos/genética , Fluorescência , Humanos , Interações Hidrofóbicas e Hidrofílicas , Conformação Proteica , Desnaturação Proteica
14.
J Fluoresc ; 19(2): 239-48, 2009 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18726677

RESUMO

Transitions in the tryptophan microenvironment and secondary structure of two monocot lectins from Sauromatum guttatum and Arisaema tortuosum under different denaturing conditions were studied by steady state and time resolved fluorescence and CD spectroscopy. The lectins exist as tetramers with a single tryptophan residue estimated per monomer, present in a polar environment. Quenching with ionic quenchers showed predominantly electropositive environment for tryptophan residues. Acrylamide had maximum quenching effect. A decrease in KI quenching due to lectin denaturation indicated redistribution of charges as a result of possible conformational change. The two values for lifetimes of tryptophanyl population (1.2-1.4 and 6.3-6.4 ns) reduced substantially on quenching or denaturation. Similarly, both the lectins showed a drastic loss of secondary structure in 5 M Gdn-HCl or 6 M Urea or at pH 2.0 and below. For the first time araceous lectins, like legume lectins are shown to bind adenine. The presence of a compact structure at alkaline pH 10.0-12.0 was observed in CD spectra.


Assuntos
Dicroísmo Circular/métodos , Lectinas/química , Proteínas de Plantas/química , Espectrometria de Fluorescência/métodos , Cinética , Conformação Proteica , Desnaturação Proteica , Estrutura Secundária de Proteína , Triptofano
15.
Int J Biol Macromol ; 44(1): 112-5, 2009 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-19038284

RESUMO

Energetics of the catalysis of Class II alpha-mannosidase (E.C.3.2.1.24) from Aspergillus fischeri was studied. The enzyme showed Kcat/Km for Man (alpha1-3) Man, Man (alpha1-2) Man and Man (alpha1-6) Man as 7488, 5376 and 3690 M(-1) min(-1), respectively. The activation energy, Ea was 15.14, 47.43 and 71.21 kJ/mol for alpha1-3, alpha1-2 and alpha1-6 linked mannobioses, respectively, reflecting the energy barrier in the hydrolysis of latter two substrates. The enzyme showed Kcat/Km as 3.56x10(5) and 4.61x10(5) M(-1) min(-1) and Ea as 38.7 and 8.92 kJ/mol, towards pNPalphaMan and 4-MeUmbalphaMan, respectively. Binding of Swainsonine to the enzyme is stronger than that of 1-deoxymannojirimycin.


Assuntos
Aspergillus/enzimologia , alfa-Manosidase/metabolismo , 1-Desoxinojirimicina , Catálise , Himecromona/análogos & derivados , Cinética , Espectrometria de Fluorescência , Swainsonina
16.
Int J Biol Macromol ; 141: 517-528, 2019 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-31494159

RESUMO

Chitin, a crucial structural and functional component of insects and fungi, serves as a target for pest management by utilizing novel chitinases. Here, we report the biocontrol potential of recombinant Myrothecium verrucaria endochitinase (rMvEChi) against insect pest and fungal pathogens. A complete ORF of MvEChi (1185 bp) was cloned and heterologously expressed in Escherichia coli. Structure based sequence alignment of MvEChi revealed the presence of conserved domains SXGG and DXXDXDXE specific for GH-18 family, involved in substrate binding and catalysis, respectively. rMvEChi (46.6 kDa) showed optimum pH and temperature as 7.0 and 30 °C, respectively. Furthermore, rMvEChi remained stable within the pH range of 6.0 to 8.0 and up to 40 °C. rMvEChi exhibited kcat/Km values of 129.83 × 103 [(g/L)-1 s-1] towards 4MU chitotrioside. Hydrolysis of chitooligosaccharides with various degrees of polymerization (DP) using rMvEChi indicated the release of DP2 as main end product with order of reaction as DP6 > DP5 > DP4 > DP3. Bioassay of rMvEChi against Helicoverpa armigera displayed potent anti-feedant activity and induced mortality. In vitro antifungal activity against plant pathogenic fungi (Ustilago maydis and Bipolaris sorokiniana) exhibited significant inhibition of mycelium growth. These results suggest that MvEChi has significant potential in enzyme-based pest and pathogen management.


Assuntos
Ascomicetos/enzimologia , Quitinases , Proteínas Fúngicas , Lepidópteros/crescimento & desenvolvimento , Doenças das Plantas/microbiologia , Ustilago/crescimento & desenvolvimento , Animais , Quitinases/química , Quitinases/farmacologia , Proteínas Fúngicas/química , Proteínas Fúngicas/farmacologia , Proteínas Recombinantes/química , Proteínas Recombinantes/farmacologia
17.
Int J Biol Macromol ; 42(2): 203-7, 2008 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-18063031

RESUMO

The hemagglutinin from the seeds of Moringa oleifera (MoL) agglutinates human as well as rabbit erythrocytes; the affinity for the latter is almost 250 times more than that for the former. MoL was inhibited by glycoproteins namely thyroglobulin, fetuin and holotransferin indicating the complex sugar specificity of the lectin. The protein is a homodimer with molecular mass of 14kDa, subunits (7.1kDa) linked by the disulfide bond(s). The secondary structure elements of MoL are alpha-helix, 28%; beta-sheet, 23%; turn 20% and unordered 28%. While the activity and secondary structure were not affected at extreme pH and high temperature, they were drastically affected in presence of dithiothreitol at and above pH 7.0, indicating that disulfide linkages hold the active conformation of the protein.


Assuntos
Hemaglutininas/química , Hemaglutininas/farmacologia , Moringa oleifera/química , Relação Estrutura-Atividade , Animais , Metabolismo dos Carboidratos , Carboidratos , Dicroísmo Circular , Cisteína/metabolismo , Dissulfetos/metabolismo , Eritrócitos/efeitos dos fármacos , Eritrócitos/metabolismo , Hemaglutininas/isolamento & purificação , Hemaglutininas/metabolismo , Humanos , Conformação Molecular , Coelhos , Sementes/química , Sensibilidade e Especificidade
18.
Int J Biol Macromol ; 119: 1154-1163, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30096396

RESUMO

The present work aims to determine the effect of pioglitazone on in-vitro albumin glycation and AGE-RAGE induced oxidative stress and inflammation. Bovine serum albumin was glycated by methylglyoxal in absence or presence of pioglitazone. Glycation markers (fructosamine, carbonyl groups, ß-amyloid aggregation, thiol groups, bilirubin binding capacity and AOPP); protein conformational changes (native-PAGE and HPLC analysis) were determined. Cellular study was done by estimating antioxidants, ROS levels, expression profile of membrane RAGE, NF-κB and levels of inflammatory cytokines (IL-6, TNF-α) using HEK-293 cell line. We observed that levels of glycation markers were reduced at higher concentration of pioglitazone as compared to glycated albumin. Structural analysis of glycated albumin showed inhibition of protein migration and structural changes when treated with pioglitazone. Pioglitazone has potentially restored cellular antioxidants and reduced levels of IL-6 and TNF-α by declining expression of membrane RAGE and NF-κB. In conclusion, pioglitazone preferentially binds to protein and alleviates protein structural changes by maintaining its integrity. Additionally, it suppresses RAGE and NF-κB levels hence alleviate cellular oxidative stress and inflammation.


Assuntos
Regulação para Baixo/efeitos dos fármacos , Sequestradores de Radicais Livres/farmacologia , Rim/citologia , NF-kappa B/metabolismo , Pioglitazona/farmacologia , Receptor para Produtos Finais de Glicação Avançada/metabolismo , Soroalbumina Bovina/metabolismo , Animais , Biomarcadores/metabolismo , Bovinos , Relação Dose-Resposta a Droga , Glicosilação/efeitos dos fármacos , Células HEK293 , Humanos , Interleucina-6/metabolismo , Espaço Intracelular/efeitos dos fármacos , Espaço Intracelular/metabolismo , Peroxidação de Lipídeos/efeitos dos fármacos , Estresse Oxidativo/efeitos dos fármacos , Aldeído Pirúvico/farmacologia , Espécies Reativas de Oxigênio/metabolismo , Fator de Necrose Tumoral alfa/metabolismo
19.
3 Biotech ; 8(8): 352, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30105177

RESUMO

Insect trehalase is a multiferous enzyme, crucial for normal physiological functions as well as under stress conditions. In this report, we present a fundamental study of the trehalase gene segment (1587 bp) from Chironomus ramosus (CrTre) encoding for 529 amino acids, using appropriate bioinformatics tools. C. ramosus, a tropical midge is an emerging animal model to investigate the consequences of environmental stresses. We observed that CrTre belongs to GH family 37 in the CAZy database and possess 57-92% identity to dipteran trehalases. In silico characterization provided information regarding the structural, functional and evolutionary aspects of midge trehalase. In the phylogenetic tree, CrTre clustered with the soluble dipteran trehalases. Moreover, domain functional characterization of the deduced protein sequence by InterProScan (IPR001661), ProSite (PS00927 and PS00928) and Pfam (PF01204) indicated presence of highly conserved signature motifs which are important for the identification of trehalase superfamily. Furthermore, the instability index of CrTre was predicted to be < 40 suggesting its in vivo stability while, the high aliphatic index indicated towards its thermal stability (index value 71-81). The modelled 3D tertiary structure of CrTre depicts a (α/α)6 barrel toroidal core. The catalytic domain of the enzyme comprised Glu424 and Asp226 as the putative active site residues. Interestingly, the conserved motifs were observed to be formed by the flexible loopy regions in the tertiary structure. This study revealed essential sequence features of the midge trehalase and offers better insights into the structural aspects of this enzyme which can be correlated with its function.

20.
Int J Biol Macromol ; 119: 962-973, 2018 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-30077668

RESUMO

IMPACT (Imprinted and Ancient)-like proteins are known to be regulators of GCN2 (General control non-derepressible 2) kinases involved in translation regulation. Here, we report on cloning and characterization of an IMPACT-like protein, LdIMPACT from Leishmania donovani which harbours two domains. 'RWD domain' at the N-terminal end that mediates GCN2 regulation, while a conserved 'ancient domain' lies at the C-terminal end whose function remains elusive. Interestingly, our observations indicated that LdIMPACT has a novel non-specific nuclease activity. In silico analysis further revealed the resemblance of ancient domain of LdIMPACT to RNase PH domain (known to bind to nucleic acids). The recombinant LdIMPACT exhibited a Mg2+-dependent nuclease activity. Moreover, thermostability and pH stability assays of the protein suggest it to be a stress-responsive protein. Circular dichroism studies elucidated the conformational transitions of the enzyme in response to various temperature and pH conditions which correlated well with the activity profiles. Thus, the current study highlights the structural and functional characteristics of LdIMPACT which interestingly also possesses a novel nuclease activity. With its physiological relevance unresolved, the multifaceted LdIMPACT might therefore lie in a hitherto unknown network, whose perturbation could be an attractive therapeutic approach for treating leishmaniasis.


Assuntos
Endonucleases/metabolismo , Leishmania donovani/metabolismo , Proteínas de Protozoários/metabolismo , Sequência de Aminoácidos , Clonagem Molecular , Endonucleases/química , Endonucleases/genética , Ativação Enzimática , Concentração de Íons de Hidrogênio , Íons , Cinética , Leishmania donovani/classificação , Leishmania donovani/enzimologia , Leishmania donovani/genética , Metais/química , Modelos Moleculares , Filogenia , Conformação Proteica , Domínios Proteicos , Proteínas de Protozoários/química , Proteínas de Protozoários/genética , Análise de Sequência de DNA , Relação Estrutura-Atividade , Especificidade por Substrato
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