Adult epithelioid glioblastoma exhibits an extremely poor prognosis and high frequency of SWI/SNF complex mutation: Insights from a retrospective study.

Epithelioid glioblastoma (eGBM) is a rare subtype of GBM. Given the update of the definition of GBM, the understanding of the molecular characteristics and prognosis of "true" adult eGBM remains limited. Herein, we retrospectively analyzed the clinicopathological data of 39 adult eGBM cases. Adult eGBM primarily affected females, with a male-to-female ratio of 1:2.3. The average age of diagnosis was 53 years, and the tumor affected the temporal lobe in 41% of cases (16/39, 41%). Microscopically, the tumors consisted mainly or entirely of epithelioid cells. Perivascular infiltration (10/39, 25.6%) and leptomeningeal dissemination (7/39, 17.9%) were not uncommon. BRAF V600E mutation was detected in 40.9% of cases (n = 9/22). Next-generation sequencing revealed that CDKN2A/B homogeneous deletion was the most frequently mutated gene (8/10, 80%), followed by TERT promoter mutation (7/10, 70%), Cyclin-dependent kinases 4 or 6 (CDK4/6) amplification (5/10, 50%) and BRAF V600E mutation (50%, 5/10). Notably, the incidence of ARID1B mutation in eGBM was 50% (5/10), representing the first report of such a mutation in this subtype of GBM. ARID1B was known to be a subunit of the SWI/SNF chromatin remodeler. Chromosome analysis showed a 7+/10- signature in 90% (9/10) cases. Adult eGBM carried a dismal prognosis compared to GBM with IDH and H3 wild-type (typical GBM) (OS: 13.89 vs 24.30 months; P = .003) and even typical GBM without MGMT promoter methylation (OS: 13.89 vs 22.08 months; P = .036). Based on these findings, it can be concluded that adult eGBM harbors a high frequency of the 7+/10- signature and alterations in the MAPK pathway, SWI/SNF complex and cyclin-related genes and portends an extremely poor prognosis.

Heat Shock Factor A1s are required for phytochrome-interacting factor 4-mediated thermomorphogenesis in Arabidopsis.

Thermomorphogenesis and the heat shock (HS) response are distinct thermal responses in plants that are regulated by PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) and HEAT SHOCK FACTOR A1s (HSFA1s), respectively. Little is known about whether these responses are interconnected and whether they are activated by similar mechanisms. An analysis of transcriptome dynamics in response to warm temperature (28°C) treatment revealed that 30 min of exposure activated the expression of a subset of HSFA1 target genes in Arabidopsis thaliana. Meanwhile, a loss-of-function HSFA1 quadruple mutant (hsfa1-cq) was insensitive to warm temperature-induced hypocotyl growth. In hsfa1-cq plants grown at 28°C, the protein and transcript levels of PIF4 were greatly reduced, and the circadian rhythm of many thermomorphogenesis-related genes (including PIF4) was disturbed. Additionally, the nuclear localization of HSFA1s and the binding of HSFA1d to the PIF4 promoter increased following warm temperature exposure, whereas PIF4 overexpression in hsfa1-cq partially rescued the altered warm temperature-induced hypocotyl growth of the mutant. Taken together, these results suggest that HSFA1s are required for PIF4 accumulation at a warm temperature, and they establish a central role for HSFA1s in regulating both thermomorphogenesis and HS responses in Arabidopsis.

Phytoremediation potential of forage mulberry (Morus atropurpurea Roxb.) for cadmium contaminated paddy soils.

Mulberry is an important material to utilize the Cd polluted farmland in China and planting forage mulberry is a new development direction. This study aimed to investigate the changes of annual biomass and Cd content in shoot of Guisangyou 62, Guisangyou 12 and Yuesang 11 in field XT-C1, XT-X1 and ZZ-M1 under the pressure of Cd in 3 years. The Cd extraction ability of forage mulberry was analyzed, and the safety of forage mulberry was also discussed. The results showed that the annual biomass of each forage mulberry shoot could reach 64.52 ∼ 86.61 t/hectare (ha). The total harvest biomass of Guisangyou 12 was the highest, followed by Guisangyou 62 and Yuesang 11. In the same test area, for different forage mulberry varieties, there were no significant differences in Cd content in the shoot at each sampling time, and the Cd concentrations in shoot were in the range of 0.05 ∼ 0.66 mg/kg, meeting the hygienical standard for feeds (GB 13078-2017, China). Without considering the test area, the average Cd removal amount of each forage mulberry in a year was about 18.52 g/ha. Planting forage mulberry may become a new ecological economic model to achieve the safe utilization of Cd polluted farmland.Novelty statement Mulberry is one of the most important plants for safe utilization the Cd polluted farmland in China and planting mulberry as animal feed is a new development direction. This study investigated the effects of Cd on the shoot biomass of 3 forage mulberry varieties at 3 experimental areas in 3 years. It also examined how much Cd could be removed from soil by harvesting forage mulberry for 4 times a year. The Cd content in the shoot of forage mulberry and its safety were also evaluated.

Adsorption of Cd(II) by rhizosphere and non-rhizosphere soil originating from mulberry field under laboratory condition.

In this study, the adsorption behavior of Cd ions by rhizosphere soil (RS) and non-rhizosphere soil (NS) originated from mulberry field was investigated. The Langmuir, Freundlich and the Dubinin-Radushkevich (D-R) equations were used to evaluate the type and efficiency of Cd adsorption. The RS was characterized by lower pH but the higher content of soil organic matter and cation exchange capacity (CEC) as compared to NS. Also, the maximum adsorption of Cd2+ for RS (5.87 mg/g) was slightly bigger than that for NS (5.36 mg/g). In Freundlich isotherm, the Kf of the adsorption of Cd2+ to surface of the RS components was higher than that of the NS, indicating stronger attraction between Cd2+ and components of the RS. According to the D-R model, the adsorption of Cd2+ by both soils was dominated by ion exchange phenomena. These results indicated that mulberry roots modified physical and chemical properties of the RS under field conditions, which also affected the Cd sorption efficiency by soil components during laboratory experiments. Current knowledge of the Cd2+ sorption processes in the rhizosphere of mulberry may be important if these trees are planted for use in phytoremediation of Cd contaminated soils.

Subcellular distribution and chemical forms of cadmium in Morus alba L.

Morus alba L. (mulberry) is a perennial woody tree and a species with great potential for Cd phyremediation owing to its large biomass and extensive root system. The mechanisms involved in Cd detoxification were investigated by analyzing the subcellular distribution and chemical forms of Cd in mulberry in the present study. These results indicated that 53.27-70.17% of Cd mulberry accumulated was stored in the root and only about 10% were in the leaves. Lots of the Cd was located in the cell wall of the mulberry root and in soluble fraction of the mulberry leaf. Moreover, in roots, the largest amount of Cd was in the form of undissolved Cd-phosphate. While in mulberry leaves and stems, most of the Cd was extracted by 2% Acetic acid and 0.6 M HCl, representing Cd-phosphate and Cd-oxalate. It could be concluded that the Cd combination with peptides and organo-ligands in vacuole of leaf or complexed with proteins or cellulose in the cell wall of root might be contributed to the tolerance of mulberry to Cd stress. The mulberry could be used to remediate the Cd polluted farmland soils.

MACRO: a combined microchip-PCR and microarray system for high-throughput monitoring of genetically modified organisms.

The monitoring of genetically modified organisms (GMOs) is a primary step of GMO regulation. However, there is presently a lack of effective and high-throughput methodologies for specifically and sensitively monitoring most of the commercialized GMOs. Herein, we developed a multiplex amplification on a chip with readout on an oligo microarray (MACRO) system specifically for convenient GMO monitoring. This system is composed of a microchip for multiplex amplification and an oligo microarray for the readout of multiple amplicons, containing a total of 91 targets (18 universal elements, 20 exogenous genes, 45 events, and 8 endogenous reference genes) that covers 97.1% of all GM events that have been commercialized up to 2012. We demonstrate that the specificity of MACRO is ~100%, with a limit of detection (LOD) that is suitable for real-world applications. Moreover, the results obtained of simulated complex samples and blind samples with MACRO were 100% consistent with expectations and the results of independently performed real-time PCRs, respectively. Thus, we believe MACRO is the first system that can be applied for effectively monitoring the majority of the commercialized GMOs in a single test.

One simple DNA extraction device and its combination with modified visual loop-mediated isothermal amplification for rapid on-field detection of genetically modified organisms.

Quickness, simplicity, and effectiveness are the three major criteria for establishing a good molecular diagnosis method in many fields. Herein we report a novel detection system for genetically modified organisms (GMOs), which can be utilized to perform both on-field quick screening and routine laboratory diagnosis. In this system, a newly designed inexpensive DNA extraction device was used in combination with a modified visual loop-mediated isothermal amplification (vLAMP) assay. The main parts of the DNA extraction device included a silica gel membrane filtration column and a modified syringe. The DNA extraction device could be easily operated without using other laboratory instruments, making it applicable to an on-field GMO test. High-quality genomic DNA (gDNA) suitable for polymerase chain reaction (PCR) and isothermal amplification could be quickly isolated from plant tissues using this device within 15 min. In the modified vLAMP assay, a microcrystalline wax encapsulated detection bead containing SYBR green fluorescent dye was introduced to avoid dye inhibition and cross-contaminations from post-LAMP operation. The system was successfully applied and validated in screening and identification of GM rice, soybean, and maize samples collected from both field testing and the Grain Inspection, Packers, and Stockyards Administration (GIPSA) proficiency test program, which demonstrated that it was well-adapted to both on-field testing and/or routine laboratory analysis of GMOs.

Accumulation of Cd by three forage mulberry (Morus atropurpurea Roxb.) cultivars in heavy metal-polluted farmland: a field experiment.

A 3-year field experiment was conducted to evaluate the accumulation ability of 3 forage mulberry (Morus atropurpurea Roxb.) varieties (Guisangyou 62, Guisangyou 12, Yuesang 11) for Cadmium (Cd). The results showed that the shoot biomass of forage mulberry could reach to 64.51~69.58 t/ha in 2018. The total production of Guisangyou 12 was the highest among the tested 3 cultivars in each year. However, the biomass of the 3 varieties displayed without significant differences at every sampling time. In addition, the concentrations of Cd in the roots of the 3 mulberry cultivars were higher than those in the corresponding shoots in 2018. But in 2019, the Cd content in roots was near to that of shoots. The Cd concentrations in the roots of the forage mulberry showed Guisangyou 62 > Yuesang 11 > Guisangyou 12. And the Cd concentrations in shoots of all the 3 tested forage mulberry varieties were less than 1 mg/kg, meeting the hygienical standard for feeds (China). Though the 3 forage mulberry varieties were not hyperaccumulators for Cd, they could be used as alternative plants to make use of the Cd-polluted (< 1.0 mg/kg) paddy soils.

The mobility of cadmium and lead in the soil-mulberry-silkworm system.

Evaluation of the transportation of heavy metals in food chain has received a great deal of attention. In this study, the mobility of cadmium (Cd) and lead (Pb) in soil-mulberry-silkworm system was assessed. The results showed that bioconcentration factors for Cd and Pb were lower than 1 for all the three mulberry cultivars. Higher translocation factors (TFs) were observed in the levels from branch to leaf, larvae to excrement. The BCFs of Pb in root and silkworm excrement were higher than those in the other parts. Meanwhile, most of Cd accumulated from soils located in the root (48.00-54.40%) and only about 10% was in the leaf. But the Cd and Pb had significant effects on the ratios of cocoon shell with Yuesang 11 under different planting densities. For Yuesang 11 and Qiangsang 1, the Pb percentages were roots > branches > leaves > stems. The rates of ingestion (IR) and digestion (DR) were a little higher than those in the control at first and then decreased gradually with time. The IR reached the lowest values on 8th day while the DR arrived at the highest. Planting mulberry and raising silkworm could be a reasonable method for the utilization of heavy metal contaminated paddy soils.